UHGV-0093612

Genome information

Genome length 47,411 bps

CDS count 71

Completeness 99.90% (high-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093612
vOTU ID	vOTU-013454
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_182059
BioSample	SAMEA3449177
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.31
Jumbo phage	No

Genome content
Genome length	47,411 bps
GC content	54.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	88.51%
Average CDS length	595.01 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093612_1	KOfam	K02836	prfB; peptide chain release factor 2	NA
UHGV-0093612_1	PHROG	phrog_19918	NA	unknown function
UHGV-0093612_1	UniRef90	UniRef90_R5DD39	Peptide chain release factor 2	NA
UHGV-0093612_1	eggNOG-mapper	1007096.BAGW01000013_gene2449	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA	NA
UHGV-0093612_1	Pfam	PF03462	PCRF domain	PCRF
UHGV-0093612_1	COG	COG1186	Protein chain release factor PrfB	NA
UHGV-0093612_2	KOfam	K00059	fabG, OAR1; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]	NA
UHGV-0093612_2	PHROG	phrog_3142	FabG-like 3-oxoacyl-(acyl-carrier-protein) reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0093612_2	UniRef90	UniRef90_R6GQ61	Short-chain dehydrogenase/reductase SDR	NA
UHGV-0093612_2	eggNOG-mapper	1519439.JPJG01000005_gene1036	KR domain	NA
UHGV-0093612_2	Pfam	PF13561	Enoyl-(Acyl carrier protein) reductase	adh_short_C2
UHGV-0093612_2	NCBIFam	NF009466.0	3-oxoacyl-ACP reductase FabG	NA
UHGV-0093612_2	COG	COG1028	NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family	NA
UHGV-0093612_2	Structural annotation	PF13561, MF_01647, NF004198, COG1028	NA	NA
UHGV-0093612_3	KOfam	K14059	int; integrase	NA
UHGV-0093612_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0093612_3	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0093612_3	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0093612_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0093612_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0093612_3	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0093612_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093612_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0093612_4	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0093612_7	Structural annotation	COG1321	NA	NA
UHGV-0093612_8	UniRef90	UniRef90_A0A3C1K7D8	HTH cro/C1-type domain-containing protein	NA
UHGV-0093612_8	eggNOG-mapper	663278.Ethha_2377	sequence-specific DNA binding	NA
UHGV-0093612_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0093612_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0093612_8	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0093612_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0093612_9	UniRef90	UniRef90_A0A3D3Y6C1	XRE family transcriptional regulator	NA
UHGV-0093612_9	eggNOG-mapper	796942.HMPREF9623_00878	NA	NA
UHGV-0093612_9	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0093612_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0093612_9	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0093612_10	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0093612_11	PHROG	phrog_4433	NA	unknown function
UHGV-0093612_11	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0093612_11	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0093612_16	UniRef90	UniRef90_A0A6N9QJT6	NA	NA
UHGV-0093612_16	eggNOG-mapper	445972.ANACOL_01823	NA	NA
UHGV-0093612_16	Pfam	PF06378	NA	DUF1071
UHGV-0093612_16	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0093612_17	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093612_17	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0093612_17	eggNOG-mapper	1238184.CM001792_gene2549	NA	NA
UHGV-0093612_17	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0093612_17	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0093612_18	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0093612_18	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0093612_18	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0093612_18	Structural annotation	PF05772	NA	NA
UHGV-0093612_19	PHROG	phrog_7566	NA	unknown function
UHGV-0093612_19	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0093612_19	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0093612_20	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0093612_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0093612_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0093612_21	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0093612_21	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0093612_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0093612_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0093612_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0093612_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0093612_21	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0093612_22	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0093612_22	UniRef90	UniRef90_UPI000F093508	phage replication protein	NA
UHGV-0093612_22	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0093612_22	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0093612_23	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0093612_23	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0093612_23	UniRef90	UniRef90_A0A3D1XEC3	DNA helicase	NA
UHGV-0093612_23	eggNOG-mapper	1408437.JNJN01000010_gene1232	Participates in initiation and elongation during chromosome replication	NA
UHGV-0093612_23	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0093612_23	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0093612_23	COG	COG0305	Replicative DNA helicase	NA
UHGV-0093612_23	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0093612_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0093612_24	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0093612_24	UniRef90	UniRef90_A0A6B9SRR2	Endodeoxyribonuclease	NA
UHGV-0093612_24	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0093612_24	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0093612_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0093612_24	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0093612_27	eggNOG-mapper	1280692.AUJL01000044_gene2346	SNF2 family N-terminal domain	NA
UHGV-0093612_27	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0093612_28	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0093612_28	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0093612_28	UniRef90	UniRef90_A0A0U3EGR7	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0093612_28	eggNOG-mapper	742823.HMPREF9465_01257	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0093612_28	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0093612_28	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0093612_28	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0093612_29	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0093612_29	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0093612_29	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0093612_29	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0093612_29	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0093612_29	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0093612_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0093612_29	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0093612_32	PHROG	phrog_38832	NA	unknown function
UHGV-0093612_32	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0093612_32	Structural annotation	PF10781	NA	NA
UHGV-0093612_33	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093612_33	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0093612_33	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0093612_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0093612_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0093612_33	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0093612_34	PHROG	phrog_3136	NA	unknown function
UHGV-0093612_34	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0093612_34	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0093612_34	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0093612_39	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0093612_39	Structural annotation	TIGR01636	NA	NA
UHGV-0093612_40	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0093612_40	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-0093612_40	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0093612_40	Structural annotation	PF16677	NA	NA
UHGV-0093612_42	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093612_42	eggNOG-mapper	1408437.JNJN01000010_gene1241	NA	NA
UHGV-0093612_44	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0093612_44	PHROG	phrog_95	integrase	integration and excision
UHGV-0093612_44	UniRef90	UniRef90_A0A3D4G6V8	Resolvase	NA
UHGV-0093612_44	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0093612_44	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0093612_44	Pfam	PF07508	Recombinase	Recombinase
UHGV-0093612_44	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0093612_44	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0093612_45	UniRef90	UniRef90_A0A644XWL1	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0093612_45	eggNOG-mapper	411467.BACCAP_02922	Resolvase, N terminal domain	NA
UHGV-0093612_45	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0093612_46	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0093612_46	UniRef90	UniRef90_A0A6I2QXZ5	Phage terminase large subunit	NA
UHGV-0093612_46	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0093612_46	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0093612_46	COG	COG5410	NA	NA
UHGV-0093612_46	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0093612_47	PHROG	phrog_64	portal protein	head and packaging
UHGV-0093612_47	UniRef90	UniRef90_A0A6I2QXE1	Phage portal protein	NA
UHGV-0093612_47	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0093612_47	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0093612_47	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0093612_49	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0093612_49	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0093612_49	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0093612_49	Pfam	PF17236	NA	DUF5309
UHGV-0093612_49	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0093612_50	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-0093612_50	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0093612_50	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0093612_50	Structural annotation	TIGR01560	NA	NA
UHGV-0093612_51	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0093612_52	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0093612_53	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0093612_54	PHROG	phrog_158	major tail protein	tail
UHGV-0093612_54	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0093612_54	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0093612_54	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0093612_55	UniRef90	UniRef90_UPI0018999178	NA	NA
UHGV-0093612_55	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0093612_55	Pfam	PF16478	NA	DUF5055
UHGV-0093612_55	Structural annotation	PF16478	NA	NA
UHGV-0093612_56	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0093612_57	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0093612_57	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0093612_57	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0093612_58	PHROG	phrog_1194	NA	unknown function
UHGV-0093612_58	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-0093612_58	eggNOG-mapper	1414720.CBYM010000002_gene561	NA	NA
UHGV-0093612_58	Pfam	PF20458	NA	DUF6711
UHGV-0093612_58	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0093612_59	PHROG	phrog_6616	tail protein	tail
UHGV-0093612_59	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0093612_59	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0093612_60	PHROG	phrog_372	tail protein	tail
UHGV-0093612_60	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0093612_60	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0093612_60	Pfam	PF05895	NA	DUF859
UHGV-0093612_60	COG	COG4675	Phage tail collar domain	NA
UHGV-0093612_60	Structural annotation	PF05895, MF_04116, NF010681, COG3401, COG4675	NA	NA
UHGV-0093612_63	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-0093612_63	PHROG	phrog_2234	tail spike protein	tail
UHGV-0093612_63	eggNOG-mapper	1268068.PG5_25610	COG2931 RTX toxins and related Ca2 -binding proteins	NA
UHGV-0093612_63	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0093612_63	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0093612_64	PHROG	phrog_199	holin	lysis
UHGV-0093612_64	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-0093612_64	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0093612_64	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0093612_64	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0093612_64	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0093612_64	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0093612_65	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0093612_65	PHROG	phrog_435	endolysin	lysis
UHGV-0093612_65	UniRef90	UniRef90_R6GV68	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0093612_65	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0093612_65	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0093612_65	Pfam	PF05036	SPOR domain	SPOR
UHGV-0093612_65	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0093612_65	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0093612_67	PHROG	phrog_22984	NA	unknown function
UHGV-0093612_68	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093612_68	UniRef90	UniRef90_UPI00104E996D	NUMOD4 domain-containing protein	NA
UHGV-0093612_68	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0093612_68	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0093612_68	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0093612_68	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0093612_68	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0093612_68	Structural annotation	PF13392	NA	NA
UHGV-0093612_69	PHROG	phrog_16490	NA	unknown function
UHGV-0093612_69	eggNOG-mapper	476272.RUMHYD_01954	NA	NA
UHGV-0093612_70	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0093612_71	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0093612_71	eggNOG-mapper	445972.ANACOL_01884	NA	NA