UHGV-0093619

Genome information

Genome length 28,479 bps

CDS count 37

Completeness 68.62% (medium-quality)

geNomad score 0.9678

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093619
vOTU ID	vOTU-033367
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_199172
BioSample	SAMEA3449341
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9678
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.67
Jumbo phage	No

Genome content
Genome length	28,479 bps
GC content	46.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	95.99%
Average CDS length	742.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093619_1	UniRef90	UniRef90_A0A316QDA6	Enolase	NA
UHGV-0093619_1	eggNOG-mapper	411473.RUMCAL_01944	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0093619_1	Structural annotation	PF06946	NA	NA
UHGV-0093619_2	Structural annotation	PF07328, NF001949	NA	NA
UHGV-0093619_4	PHROG	phrog_19111	NA	unknown function
UHGV-0093619_4	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0093619_4	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0093619_5	PHROG	phrog_25979	NA	unknown function
UHGV-0093619_5	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0093619_6	PHROG	phrog_14770	NA	unknown function
UHGV-0093619_6	UniRef90	UniRef90_A0A4R2L561	SNF2 domain-containing protein	NA
UHGV-0093619_6	eggNOG-mapper	1121091.AUMP01000003_gene2597	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	NA
UHGV-0093619_6	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0093619_6	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0093619_6	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0093619_7	eggNOG-mapper	1203606.HMPREF1526_02741	NA	NA
UHGV-0093619_9	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0093619_9	eggNOG-mapper	748224.HMPREF9436_01402	NA	NA
UHGV-0093619_10	PHROG	phrog_12105	NA	unknown function
UHGV-0093619_11	PHROG	phrog_15239	NA	unknown function
UHGV-0093619_11	eggNOG-mapper	1507.HMPREF0262_03462	NA	NA
UHGV-0093619_12	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0093619_12	UniRef90	UniRef90_UPI001CF832E1	N4-gp56 family major capsid protein	NA
UHGV-0093619_12	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-0093619_12	Pfam	PF13252	NA	DUF4043
UHGV-0093619_12	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0093619_12	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0093619_13	PHROG	phrog_13908	NA	unknown function
UHGV-0093619_13	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0093619_14	KOfam	K07584	NA	NA
UHGV-0093619_14	PHROG	phrog_4478	peptidase	other
UHGV-0093619_14	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0093619_14	COG	COG2868	NA	NA
UHGV-0093619_14	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0093619_15	PHROG	phrog_156	portal protein	head and packaging
UHGV-0093619_15	UniRef90	UniRef90_A0A2K9P4K6	Sigma-70 region 2	NA
UHGV-0093619_15	eggNOG-mapper	1507.HMPREF0262_03465	NA	NA
UHGV-0093619_15	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0093619_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0093619_16	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0093619_16	UniRef90	UniRef90_A0A7U9NMD5	Phage terminase, large subunit, PBSX family	NA
UHGV-0093619_16	eggNOG-mapper	1507.HMPREF0262_03468	NA	NA
UHGV-0093619_16	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0093619_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0093619_16	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0093619_17	PHROG	phrog_2412	NA	unknown function
UHGV-0093619_17	UniRef90	UniRef90_UPI0011CC13F5	stress-induced protein	NA
UHGV-0093619_17	eggNOG-mapper	1122981.AUME01000026_gene531	NA	NA
UHGV-0093619_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0093619_18	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-0093619_18	eggNOG-mapper	1410624.JNKK01000051_gene2469	sigma factor activity	NA
UHGV-0093619_18	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0093619_18	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0093619_19	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0093619_19	UniRef90	UniRef90_A0A7C6JZZ1	DNA cytosine methyltransferase	NA
UHGV-0093619_19	eggNOG-mapper	457398.HMPREF0326_03026	C-5 cytosine-specific DNA methylase	NA
UHGV-0093619_19	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0093619_21	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0093619_21	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0093619_21	UniRef90	UniRef90_UPI00041C45A3	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0093619_21	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0093619_21	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0093619_21	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0093619_21	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0093619_22	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0093619_22	eggNOG-mapper	1519439.JPJG01000051_gene720	HNH endonuclease	NA
UHGV-0093619_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0093619_22	Structural annotation	PF07106, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0093619_23	PHROG	phrog_2113	NA	unknown function
UHGV-0093619_23	UniRef90	UniRef90_UPI000835921F	helix-turn-helix domain-containing protein	NA
UHGV-0093619_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0093619_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0093619_24	UniRef90	UniRef90_A0A316Q8B3	Single-stranded DNA-binding protein	NA
UHGV-0093619_24	eggNOG-mapper	941824.TCEL_02056	Single-stranded DNA-binding protein	NA
UHGV-0093619_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0093619_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0093619_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0093619_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0093619_24	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0093619_25	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0093619_25	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0093619_25	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0093619_26	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0093619_26	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-0093619_26	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0093619_26	Pfam	PF06378	NA	DUF1071
UHGV-0093619_26	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0093619_28	PHROG	phrog_1029	NA	unknown function
UHGV-0093619_28	eggNOG-mapper	1567010.A0A0A7S0W4_9VIRU	NA	NA
UHGV-0093619_28	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0093619_29	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0093619_29	UniRef90	UniRef90_A0A5B0W234	Replication terminator protein	NA
UHGV-0093619_29	eggNOG-mapper	756499.Desde_1051	NA	NA
UHGV-0093619_31	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0093619_31	PHROG	phrog_923	NA	unknown function
UHGV-0093619_31	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0093619_35	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0093619_35	PHROG	phrog_38620	transcriptional regulator	transcription regulation
UHGV-0093619_35	UniRef90	UniRef90_UPI00118473B2	helix-turn-helix transcriptional regulator	NA
UHGV-0093619_35	eggNOG-mapper	764562.D7RWM4_9CAUD	sequence-specific DNA binding	NA
UHGV-0093619_35	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0093619_35	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0093619_36	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0093619_36	PHROG	phrog_38620	transcriptional regulator	transcription regulation
UHGV-0093619_36	UniRef90	UniRef90_UPI000696B62B	helix-turn-helix transcriptional regulator	NA
UHGV-0093619_36	eggNOG-mapper	1159488.SEQMU2_13765	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0093619_36	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0093619_36	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0093619_36	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0093619_37	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0093619_37	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0093619_37	UniRef90	UniRef90_A0A316QIY5	XRE family transcriptional regulator	NA
UHGV-0093619_37	eggNOG-mapper	665956.HMPREF1032_03112	sequence-specific DNA binding	NA
UHGV-0093619_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093619_37	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0093619_37	Structural annotation	PF12844, NF041951, COG1476	NA	NA