UHGV-0093767

Genome information

Genome length 42,935 bps

CDS count 76

Completeness 96.41% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093767
vOTU ID	vOTU-071778
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_187020
BioSample	SAMEA3449320
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.41% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.32
Jumbo phage	No

Genome content
Genome length	42,935 bps
GC content	36.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	90.21%
Average CDS length	511.78 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093767_1	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0093767_1	PHROG	phrog_670	endolysin	lysis
UHGV-0093767_1	UniRef90	UniRef90_UPI00156EE520	amidase	NA
UHGV-0093767_1	eggNOG-mapper	411490.ANACAC_00703	Ami_2	NA
UHGV-0093767_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0093767_1	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0093767_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0093767_1	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA
UHGV-0093767_2	PHROG	phrog_962	holin	lysis
UHGV-0093767_2	UniRef90	UniRef90_UPI0015714279	phage holin	NA
UHGV-0093767_2	eggNOG-mapper	1120998.AUFC01000030_gene2252	Bacteriophage holin	NA
UHGV-0093767_2	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0093767_2	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0093767_2	COG	COG5546	NA	NA
UHGV-0093767_2	Structural annotation	PF04531, TIGR01598, COG5546	NA	NA
UHGV-0093767_5	eggNOG-mapper	1123075.AUDP01000020_gene1530	Transposase	NA
UHGV-0093767_5	COG	COG4372	NA	NA
UHGV-0093767_6	PHROG	phrog_18444	NA	unknown function
UHGV-0093767_6	UniRef90	UniRef90_A0A4U9RQD7	Peptide chain release factor 2	NA
UHGV-0093767_7	PHROG	phrog_6616	tail protein	tail
UHGV-0093767_7	UniRef90	UniRef90_A0A173TV73	Collagen triple helix repeat (20 copies)	NA
UHGV-0093767_7	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0093767_8	PHROG	phrog_1194	NA	unknown function
UHGV-0093767_8	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0093767_9	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0093767_9	UniRef90	UniRef90_A0A173TXH9	Phage-related protein	NA
UHGV-0093767_9	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0093767_9	COG	COG5412	Phage-related protein	NA
UHGV-0093767_9	Structural annotation	PF11172	NA	NA
UHGV-0093767_10	PHROG	phrog_706	NA	unknown function
UHGV-0093767_10	UniRef90	UniRef90_A0A173TZF2	Bacteriophage Gp15 protein	NA
UHGV-0093767_10	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0093767_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0093767_10	Structural annotation	PF06854	NA	NA
UHGV-0093767_11	PHROG	phrog_11299	NA	unknown function
UHGV-0093767_11	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0093767_11	Structural annotation	PF10666	NA	NA
UHGV-0093767_12	PHROG	phrog_3099	NA	unknown function
UHGV-0093767_12	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0093767_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0093767_13	PHROG	phrog_3266	tail completion	connector
UHGV-0093767_13	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0093767_13	Structural annotation	PF12691	NA	NA
UHGV-0093767_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0093767_14	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0093767_14	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0093767_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0093767_14	Structural annotation	PF11114	NA	NA
UHGV-0093767_15	PHROG	phrog_3366	NA	unknown function
UHGV-0093767_15	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0093767_15	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0093767_16	PHROG	phrog_1233	NA	unknown function
UHGV-0093767_16	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0093767_16	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0093767_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0093767_17	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0093767_18	PHROG	phrog_247	major head protein	head and packaging
UHGV-0093767_18	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0093767_18	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0093767_18	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0093767_18	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0093767_19	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0093767_20	PHROG	phrog_419	NA	unknown function
UHGV-0093767_20	eggNOG-mapper	358220.C380_08880	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0093767_20	Structural annotation	PF14083	NA	NA
UHGV-0093767_21	PHROG	phrog_1048	NA	unknown function
UHGV-0093767_21	UniRef90	UniRef90_UPI00156DCDC3	NA	NA
UHGV-0093767_21	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0093767_21	Pfam	PF11195	NA	DUF2829
UHGV-0093767_21	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0093767_21	Structural annotation	PF11195	NA	NA
UHGV-0093767_22	PHROG	phrog_918	NA	unknown function
UHGV-0093767_22	UniRef90	UniRef90_UPI00195F2652	NA	NA
UHGV-0093767_22	eggNOG-mapper	1225795.K4I1W7_9CAUD	NA	NA
UHGV-0093767_22	Pfam	PF19791	NA	DUF6275
UHGV-0093767_22	Structural annotation	PF19791	NA	NA
UHGV-0093767_23	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0093767_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0093767_24	UniRef90	UniRef90_A0A173TY40	Phage minor capsid protein 2	NA
UHGV-0093767_24	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0093767_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0093767_24	COG	COG2369	NA	NA
UHGV-0093767_24	Structural annotation	PF06152	NA	NA
UHGV-0093767_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0093767_26	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0093767_26	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0093767_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0093767_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0093767_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0093767_27	UniRef90	UniRef90_UPI00156D9D24	PBSX family phage terminase large subunit	NA
UHGV-0093767_27	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0093767_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0093767_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0093767_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0093767_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0093767_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0093767_27	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0093767_28	PHROG	phrog_33130	NA	unknown function
UHGV-0093767_28	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0093767_30	PHROG	phrog_1257	ribosome associated inhibitor A; zinc finger domain	moron, auxiliary metabolic gene and host takeover
UHGV-0093767_30	UniRef90	UniRef90_A0A3E4LX24	XRE family transcriptional regulator	NA
UHGV-0093767_31	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0093767_31	UniRef90	UniRef90_UPI001BA79D8F	helix-turn-helix domain-containing protein	NA
UHGV-0093767_31	eggNOG-mapper	877411.JMMA01000002_gene1483	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0093767_31	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0093767_31	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0093767_35	Structural annotation	PF14285	NA	NA
UHGV-0093767_37	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0093767_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0093767_37	UniRef90	UniRef90_A0A173U128	Transcriptional regulator, y4mF family	NA
UHGV-0093767_37	eggNOG-mapper	1235790.C805_00648	Helix-turn-helix XRE-family like proteins	NA
UHGV-0093767_37	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0093767_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093767_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0093767_41	Structural annotation	PF14844	NA	NA
UHGV-0093767_45	Structural annotation	PF19079, TIGR04203	NA	NA
UHGV-0093767_46	Structural annotation	PF11950	NA	NA
UHGV-0093767_48	eggNOG-mapper	1235793.C809_02213	NA	NA
UHGV-0093767_54	PHROG	phrog_31463	NA	unknown function
UHGV-0093767_54	UniRef90	UniRef90_UPI001160B515	LemA family protein	NA
UHGV-0093767_55	eggNOG-mapper	1504823.CCMM01000008_gene1059	NA	NA
UHGV-0093767_57	PHROG	phrog_2316	NA	unknown function
UHGV-0093767_57	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0093767_57	eggNOG-mapper	1007103.AFHW01000207_gene1752	NA	NA
UHGV-0093767_57	Pfam	PF16475	NA	DUF5052
UHGV-0093767_57	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0093767_59	UniRef90	UniRef90_A0A173TZ35	Transposase	NA
UHGV-0093767_59	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0093767_59	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0093767_59	Structural annotation	PF13518, PF13613, NF040595, COG3415	NA	NA
UHGV-0093767_60	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0093767_60	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0093767_60	UniRef90	UniRef90_A0A173RE69	Phage anti-repressor protein	NA
UHGV-0093767_60	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0093767_60	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0093767_60	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0093767_60	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0093767_60	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0093767_61	PHROG	phrog_16304	NA	unknown function
UHGV-0093767_61	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0093767_61	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0093767_62	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0093767_62	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0093767_62	UniRef90	UniRef90_A0A417V5H0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0093767_62	eggNOG-mapper	1158604.I591_01786	Endodeoxyribonuclease RusA	NA
UHGV-0093767_62	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0093767_62	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0093767_62	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0093767_63	PHROG	phrog_7566	NA	unknown function
UHGV-0093767_63	UniRef90	UniRef90_A0A374AGN9	Phosphoenolpyruvate carboxykinase	NA
UHGV-0093767_63	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0093767_64	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0093767_64	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0093767_64	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0093767_65	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0093767_65	UniRef90	UniRef90_A0A417V5L9	Recombinase	NA
UHGV-0093767_65	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-0093767_65	Pfam	PF04404	ERF superfamily	ERF
UHGV-0093767_65	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0093767_66	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0093767_66	UniRef90	UniRef90_UPI00156F9B5D	siphovirus Gp157 family protein	NA
UHGV-0093767_66	eggNOG-mapper	683837.lse_2160	Siphovirus Gp157	NA
UHGV-0093767_66	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0093767_66	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0093767_70	PHROG	phrog_36464	NA	unknown function
UHGV-0093767_70	eggNOG-mapper	1235798.C817_05488	NA	NA
UHGV-0093767_70	Structural annotation	PF09035	NA	NA
UHGV-0093767_72	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0093767_72	UniRef90	UniRef90_A0A173TZM8	Helix-turn-helix domain	NA
UHGV-0093767_72	eggNOG-mapper	1589749.A0A0B5A036_9CAUD	sequence-specific DNA binding	NA
UHGV-0093767_72	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0093767_73	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0093767_73	UniRef90	UniRef90_A0A173TZ83	Helix-turn-helix domain	NA
UHGV-0093767_73	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0093767_73	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093767_73	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0093767_73	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0093767_74	PHROG	phrog_87	metallo-protease	other
UHGV-0093767_74	UniRef90	UniRef90_A0A173TZ87	Metallopeptidase immA	NA
UHGV-0093767_74	eggNOG-mapper	476272.RUMHYD_01733	IrrE N-terminal-like domain	NA
UHGV-0093767_74	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0093767_74	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0093767_74	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0093767_75	eggNOG-mapper	397291.C804_05803	response to antibiotic	NA
UHGV-0093767_75	COG	COG4640	NA	NA
UHGV-0093767_76	KOfam	K14059	int; integrase	NA
UHGV-0093767_76	PHROG	phrog_1	integrase	integration and excision
UHGV-0093767_76	UniRef90	UniRef90_A0A173TZS3	Integrase	NA
UHGV-0093767_76	eggNOG-mapper	1235798.C817_05483	Phage integrase family	NA
UHGV-0093767_76	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0093767_76	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0093767_76	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA