UHGV-0093870

Genome information

Genome length 37,433 bps

CDS count 58

Completeness 88.66% (medium-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093870
vOTU ID	vOTU-034601
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_178272
BioSample	SAMEA3449276
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.07
Jumbo phage	No

Genome content
Genome length	37,433 bps
GC content	55.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	87.80%
Average CDS length	569.22 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093870_1	KOfam	K07486	K07486; transposase	NA
UHGV-0093870_1	PHROG	phrog_2199	transposase	integration and excision
UHGV-0093870_1	UniRef90	UniRef90_A0A2A7B262	IS110 family transposase (Fragment)	NA
UHGV-0093870_1	eggNOG-mapper	657322.FPR_00830	PFAM transposase IS116 IS110 IS902 family protein	NA
UHGV-0093870_1	Pfam	PF02371	Transposase IS116/IS110/IS902 family	Transposase_20
UHGV-0093870_1	COG	COG3547	Transposase	NA
UHGV-0093870_5	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0093870_6	PHROG	phrog_4433	NA	unknown function
UHGV-0093870_6	UniRef90	UniRef90_A0A6M5C839	Putative ADP-ribosyltransferase	NA
UHGV-0093870_6	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0093870_6	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0093870_7	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0093870_7	UniRef90	UniRef90_B0MB86	BRO family, N-terminal domain protein	NA
UHGV-0093870_7	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0093870_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0093870_7	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0093870_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0093870_7	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0093870_8	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0093870_8	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0093870_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0093870_9	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0093870_9	eggNOG-mapper	699218.HMPREF0889_0208	Helix-turn-helix XRE-family like proteins	NA
UHGV-0093870_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093870_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0093870_9	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0093870_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0093870_10	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-0093870_10	eggNOG-mapper	665950.HMPREF1025_02562	TRANSCRIPTIONal	NA
UHGV-0093870_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093870_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0093870_10	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0093870_11	Structural annotation	PF09202, MF_01819, NF041230, COG1321	NA	NA
UHGV-0093870_14	eggNOG-mapper	321955.AAGP01000017_gene2211	NA	NA
UHGV-0093870_14	Structural annotation	PF16900, NF040991	NA	NA
UHGV-0093870_17	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0093870_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093870_17	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0093870_18	KOfam	K14059	int; integrase	NA
UHGV-0093870_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0093870_18	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0093870_18	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0093870_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0093870_18	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0093870_18	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0093870_20	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0093870_20	Structural annotation	PF12510	NA	NA
UHGV-0093870_21	PHROG	phrog_20016	NA	unknown function
UHGV-0093870_21	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0093870_21	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0093870_21	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0093870_22	PHROG	phrog_16490	NA	unknown function
UHGV-0093870_22	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0093870_23	PHROG	phrog_22984	NA	unknown function
UHGV-0093870_24	PHROG	phrog_21718	NA	unknown function
UHGV-0093870_24	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0093870_25	PHROG	phrog_3754	NA	unknown function
UHGV-0093870_25	eggNOG-mapper	1485543.JMME01000025_gene2462	NA	NA
UHGV-0093870_27	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0093870_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093870_27	COG	COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	NA
UHGV-0093870_27	Structural annotation	PF01381, TIGR03070, COG1396	NA	NA
UHGV-0093870_29	PHROG	phrog_15303	NA	unknown function
UHGV-0093870_30	PHROG	phrog_1863	NA	unknown function
UHGV-0093870_30	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0093870_31	KOfam	K07273	acm; lysozyme	NA
UHGV-0093870_31	PHROG	phrog_291	endolysin	lysis
UHGV-0093870_31	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0093870_31	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0093870_31	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0093870_31	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0093870_31	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0093870_32	UniRef90	UniRef90_A0A6A8KSZ5	XkdX family protein	NA
UHGV-0093870_32	eggNOG-mapper	718252.FP2_16990	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0093870_32	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0093870_32	Structural annotation	PF09693	NA	NA
UHGV-0093870_34	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0093870_34	UniRef90	UniRef90_A0A1Q6KPN8	NA	NA
UHGV-0093870_34	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0093870_34	Pfam	PF19789	NA	DUF6273
UHGV-0093870_34	Structural annotation	PF19789, PF18911	NA	NA
UHGV-0093870_36	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0093870_36	COG	COG4722	Phage-related protein YomH	NA
UHGV-0093870_36	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0093870_37	PHROG	phrog_3558	tail protein	tail
UHGV-0093870_37	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0093870_37	eggNOG-mapper	1120933.ATUY01000002_gene164	Prophage endopeptidase tail	NA
UHGV-0093870_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0093870_37	COG	COG4926	Phage-related protein	NA
UHGV-0093870_37	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0093870_38	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0093870_38	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-0093870_38	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0093870_38	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0093870_38	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0093870_38	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0093870_38	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0093870_41	PHROG	phrog_885	major tail protein	tail
UHGV-0093870_41	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0093870_41	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0093870_42	Structural annotation	PF13554	NA	NA
UHGV-0093870_43	PHROG	phrog_17977	NA	unknown function
UHGV-0093870_43	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0093870_43	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0093870_45	PHROG	phrog_544	major head protein	head and packaging
UHGV-0093870_45	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0093870_45	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0093870_45	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0093870_48	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0093870_48	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0093870_48	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0093870_48	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0093870_48	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0093870_50	PHROG	phrog_8680	NA	unknown function
UHGV-0093870_50	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0093870_50	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0093870_50	Pfam	PF14386	NA	DUF4417
UHGV-0093870_50	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0093870_50	Structural annotation	PF14386	NA	NA
UHGV-0093870_51	eggNOG-mapper	706437.HMPREF0813_02005	NA	NA
UHGV-0093870_52	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0093870_52	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0093870_52	eggNOG-mapper	386415.NT01CX_2177	Phage Mu protein F like protein	NA
UHGV-0093870_52	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0093870_52	COG	COG2369	NA	NA
UHGV-0093870_52	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0093870_54	PHROG	phrog_64	portal protein	head and packaging
UHGV-0093870_54	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0093870_54	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0093870_54	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0093870_54	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0093870_55	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0093870_55	PHROG	phrog_10250	NA	unknown function
UHGV-0093870_55	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0093870_55	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0093870_55	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0093870_55	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0093870_55	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0093870_55	COG	COG1783	Phage terminase large subunit	NA
UHGV-0093870_55	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0093870_56	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0093870_56	eggNOG-mapper	748224.HMPREF9436_03342	transposase activity	NA
UHGV-0093870_56	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0093870_57	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0093870_57	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0093870_57	UniRef90	UniRef90_R5AIZ8	Methyltransferase	NA
UHGV-0093870_57	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-0093870_57	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0093870_57	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0093870_57	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0093870_57	COG	COG0863	DNA modification methylase	NA
UHGV-0093870_57	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0093870_58	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0093870_58	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA