UHGV-0093879

Genome information

Genome length 58,285 bps

CDS count 86

Completeness 74.13% (medium-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093879
vOTU ID	vOTU-017908
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_171005
BioSample	SAMEA3136747
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.15
Jumbo phage	No

Genome content
Genome length	58,285 bps
GC content	40.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	86
CDS density	81.66%
Average CDS length	559.33 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093879_6	UniRef90	UniRef90_A0A3R6F7K5	XRE family transcriptional regulator	NA
UHGV-0093879_6	eggNOG-mapper	411490.ANACAC_00697	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0093879_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0093879_6	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0093879_7	Structural annotation	PF13107	NA	NA
UHGV-0093879_9	eggNOG-mapper	1232453.BAIF02000058_gene1620	NA	NA
UHGV-0093879_10	UniRef90	UniRef90_A0A4Q5ERS4	NA	NA
UHGV-0093879_10	eggNOG-mapper	536227.CcarbDRAFT_4360	NA	NA
UHGV-0093879_10	Pfam	PF20075	NA	DUF6471
UHGV-0093879_10	Structural annotation	PF20075, NF041951, COG3655	NA	NA
UHGV-0093879_11	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0093879_11	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0093879_11	UniRef90	UniRef90_A0A317UAH6	DNA recombinase	NA
UHGV-0093879_11	eggNOG-mapper	476272.RUMHYD_01910	Resolvase, N terminal domain	NA
UHGV-0093879_11	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0093879_11	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0093879_11	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0093879_11	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0093879_12	eggNOG-mapper	476272.RUMHYD_01911	NA	NA
UHGV-0093879_12	Structural annotation	PF08962	NA	NA
UHGV-0093879_22	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093879_22	UniRef90	UniRef90_UPI001C0F6E05	NUMOD4 domain-containing protein	NA
UHGV-0093879_22	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0093879_22	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0093879_22	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0093879_22	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0093879_25	PHROG	phrog_3002	NA	unknown function
UHGV-0093879_27	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0093879_27	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0093879_27	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0093879_27	COG	COG5410	NA	NA
UHGV-0093879_27	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0093879_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0093879_28	UniRef90	UniRef90_A0A373NRA4	NA	NA
UHGV-0093879_28	eggNOG-mapper	1235802.C823_01505	sigma factor activity	NA
UHGV-0093879_28	Pfam	PF07374	NA	DUF1492
UHGV-0093879_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0093879_28	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0093879_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0093879_29	UniRef90	UniRef90_A0A317U8X5	Phage portal protein	NA
UHGV-0093879_29	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0093879_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0093879_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0093879_31	PHROG	phrog_909	major head protein	head and packaging
UHGV-0093879_31	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0093879_31	Structural annotation	PF02924	NA	NA
UHGV-0093879_32	PHROG	phrog_29	major head protein	head and packaging
UHGV-0093879_32	UniRef90	UniRef90_R0C0Z5	S-l_SbsC_C domain-containing protein	NA
UHGV-0093879_32	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0093879_32	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0093879_32	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0093879_33	eggNOG-mapper	476272.RUMHYD_01948	NA	NA
UHGV-0093879_34	PHROG	phrog_937	hemolysin	other
UHGV-0093879_35	UniRef90	UniRef90_A0A317UDM1	Sigma70_r4 domain-containing protein	NA
UHGV-0093879_35	eggNOG-mapper	476272.RUMHYD_01951	NA	NA
UHGV-0093879_35	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0093879_35	Structural annotation	PF04545, MF_00674, NF001067, COG1342	NA	NA
UHGV-0093879_36	PHROG	phrog_27126	neck protein	connector
UHGV-0093879_36	eggNOG-mapper	1408321.JNJD01000008_gene2036	NA	NA
UHGV-0093879_37	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0093879_38	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0093879_39	Structural annotation	PF05657	NA	NA
UHGV-0093879_40	PHROG	phrog_1129	holin	lysis
UHGV-0093879_40	UniRef90	UniRef90_UPI001D072DD9	phage holin family protein	NA
UHGV-0093879_40	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0093879_40	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0093879_40	Structural annotation	PF16079	NA	NA
UHGV-0093879_41	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0093879_41	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0093879_42	PHROG	phrog_36112	NA	unknown function
UHGV-0093879_42	eggNOG-mapper	476272.RUMHYD_01969	NA	NA
UHGV-0093879_42	Structural annotation	PF16478	NA	NA
UHGV-0093879_44	eggNOG-mapper	476272.RUMHYD_01971	lysine exporter protein (LysE YggA)	NA
UHGV-0093879_44	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0093879_45	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093879_45	UniRef90	UniRef90_A0A317UCE9	GIY-YIG domain-containing protein	NA
UHGV-0093879_45	eggNOG-mapper	476272.RUMHYD_01972	GIY-YIG type nucleases (URI domain)	NA
UHGV-0093879_45	PADLOC	HEase_00030	homing endonuclease	RM
UHGV-0093879_45	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0093879_45	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0093879_45	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0093879_45	COG	COG3860	NA	NA
UHGV-0093879_45	Structural annotation	PF04936, PF19835, TIGR01453	NA	NA
UHGV-0093879_46	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093879_46	UniRef90	UniRef90_A0A173UI60	Group I intron endonuclease	NA
UHGV-0093879_46	eggNOG-mapper	745718.JADT01000019_gene1515	Intron encoded nuclease repeat motif	NA
UHGV-0093879_46	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0093879_46	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0093879_46	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0093879_46	Structural annotation	PF07453, PF19835, PF04936, TIGR01453	NA	NA
UHGV-0093879_47	PHROG	phrog_28918	NA	unknown function
UHGV-0093879_47	UniRef90	UniRef90_A0A1C6H654	Phage-related protein	NA
UHGV-0093879_47	eggNOG-mapper	476272.RUMHYD_01973	phage tail tape measure protein	NA
UHGV-0093879_47	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0093879_48	eggNOG-mapper	665950.HMPREF1025_01423	NA	NA
UHGV-0093879_48	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0093879_48	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0093879_48	Structural annotation	PF08784, COG5625	NA	NA
UHGV-0093879_49	UniRef90	UniRef90_A0A412EKK8	HNHc domain-containing protein	NA
UHGV-0093879_49	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0093879_49	Structural annotation	PF13392	NA	NA
UHGV-0093879_50	PHROG	phrog_2880	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0093879_50	UniRef90	UniRef90_A0A412EKX5	Helix-turn-helix domain-containing protein	NA
UHGV-0093879_50	eggNOG-mapper	1121012.AUKX01000038_gene3753	Helix-turn-helix domain	NA
UHGV-0093879_50	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0093879_50	Structural annotation	PF13730, MF_01819, TIGR04176, COG5529	NA	NA
UHGV-0093879_52	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0093879_53	PHROG	phrog_2316	NA	unknown function
UHGV-0093879_53	UniRef90	UniRef90_UPI001570BA1B	NA	NA
UHGV-0093879_53	eggNOG-mapper	1504823.CCMM01000012_gene2233	NA	NA
UHGV-0093879_53	Pfam	PF16475	NA	DUF5052
UHGV-0093879_53	Structural annotation	PF16475	NA	NA
UHGV-0093879_54	PHROG	phrog_32721	NA	unknown function
UHGV-0093879_54	UniRef90	UniRef90_UPI00101B9F0E	Ig-like domain-containing protein	NA
UHGV-0093879_54	eggNOG-mapper	397288.C806_03994	domain, Protein	NA
UHGV-0093879_54	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0093879_54	COG	COG5492	NA	NA
UHGV-0093879_54	Structural annotation	PF02368, PF08758, PF06832, MF_04116, NF010681, COG5492	NA	NA
UHGV-0093879_55	PHROG	phrog_1194	NA	unknown function
UHGV-0093879_55	eggNOG-mapper	673837.D2IZU9_9CAUD	NA	NA
UHGV-0093879_55	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0093879_56	PHROG	phrog_6616	tail protein	tail
UHGV-0093879_56	UniRef90	UniRef90_A0A317UCC3	Peptidase S74 domain-containing protein	NA
UHGV-0093879_56	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0093879_56	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0093879_56	Structural annotation	PF05113, PF01835, PF03921, NF033848, COG3500	NA	NA
UHGV-0093879_57	UniRef90	UniRef90_UPI001C0EBDDC	pyocin knob domain-containing protein	NA
UHGV-0093879_59	KOfam	K07273	acm; lysozyme	NA
UHGV-0093879_59	PHROG	phrog_291	endolysin	lysis
UHGV-0093879_59	UniRef90	UniRef90_A0A317UBE2	PG_binding_1 domain-containing protein	NA
UHGV-0093879_59	eggNOG-mapper	476272.RUMHYD_02876	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0093879_59	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0093879_59	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0093879_59	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0093879_59	Structural annotation	PF01183, TIGR02594, TIGR04303, COG3757, COG3942	NA	NA
UHGV-0093879_60	UniRef90	UniRef90_UPI0011C82882	helix-turn-helix domain-containing protein	NA
UHGV-0093879_60	eggNOG-mapper	500632.CLONEX_02025	NA	NA
UHGV-0093879_60	Structural annotation	PF00196, NF040595, COG2771	NA	NA
UHGV-0093879_61	eggNOG-mapper	1410625.JHWK01000002_gene45	Helix-turn-helix XRE-family like proteins	NA
UHGV-0093879_61	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0093879_61	Structural annotation	PF08965, NF040522, COG2944	NA	NA
UHGV-0093879_62	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-0093879_62	AcrCatalog	cluster_32378	NA	NA
UHGV-0093879_63	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-0093879_63	PHROG	phrog_8810	NA	unknown function
UHGV-0093879_63	UniRef90	UniRef90_A0A317UEJ5	Stage 0 sporulation protein A homolog	NA
UHGV-0093879_63	eggNOG-mapper	479437.Elen_1697	LytTr DNA-binding domain	NA
UHGV-0093879_63	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0093879_63	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0093879_63	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0093879_63	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0093879_67	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0093879_67	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0093879_67	UniRef90	UniRef90_A0A1Q6KAD1	HTH cro/C1-type domain-containing protein	NA
UHGV-0093879_67	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-0093879_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093879_67	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0093879_67	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0093879_68	UniRef90	UniRef90_A0A1C5ZMM8	HTH_8 domain-containing protein	NA
UHGV-0093879_68	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0093879_68	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0093879_68	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0093879_69	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0093879_69	UniRef90	UniRef90_A0A3E5EKH6	Transcriptional regulator	NA
UHGV-0093879_69	eggNOG-mapper	411470.RUMGNA_03232	NA	NA
UHGV-0093879_69	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0093879_69	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0093879_69	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0093879_69	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0093879_70	PHROG	phrog_27114	NA	unknown function
UHGV-0093879_71	eggNOG-mapper	476272.RUMHYD_03309	NA	NA
UHGV-0093879_71	Structural annotation	PF13601, MF_01819, NF008565, COG1846	NA	NA
UHGV-0093879_72	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0093879_72	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0093879_72	UniRef90	UniRef90_A0A373NQZ6	Phage antirepressor Ant	NA
UHGV-0093879_72	eggNOG-mapper	1499683.CCFF01000017_gene2614	Phage antirepressor protein	NA
UHGV-0093879_72	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0093879_72	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0093879_72	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0093879_72	Structural annotation	PF03374, PF09669, COG3645, COG3561	NA	NA
UHGV-0093879_75	Structural annotation	MF_01360	NA	NA
UHGV-0093879_80	Structural annotation	PF10922	NA	NA
UHGV-0093879_84	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0093879_84	PHROG	phrog_26861	NA	unknown function
UHGV-0093879_84	UniRef90	UniRef90_A0A3B9PW42	Single-stranded DNA-binding protein	NA
UHGV-0093879_84	eggNOG-mapper	1120998.AUFC01000016_gene32	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0093879_84	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0093879_84	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0093879_84	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0093879_85	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0093879_85	PHROG	phrog_20188	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093879_85	UniRef90	UniRef90_A0A373NR21	AAA_23 domain-containing protein	NA
UHGV-0093879_85	eggNOG-mapper	476272.RUMHYD_03317	nuclear chromosome segregation	NA
UHGV-0093879_85	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0093879_85	Structural annotation	PF11398, PF05276, MF_00449, TIGR03185, COG0419	NA	NA
UHGV-0093879_86	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0093879_86	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0093879_86	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-0093879_86	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0093879_86	Pfam	PF03837	RecT family	RecT
UHGV-0093879_86	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0093879_86	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0093879_86	Structural annotation	PF03837, NF007351, COG3723	NA	NA