UHGV-0093881

Genome information

vOTU vOTU-031933

Genome length 24,967 bps

CDS count 34

Completeness 69.73% (medium-quality)

geNomad score 0.9551

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093881
vOTU ID	vOTU-031933
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_198006
BioSample	SAMEA3449312
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9551
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.45
Jumbo phage	No

Genome content
Genome length	24,967 bps
GC content	59.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	90.73%
Average CDS length	668.82 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093881_1	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0093881_1	UniRef90	UniRef90_UPI001B0FECB8	phage tail tape measure protein	NA
UHGV-0093881_1	eggNOG-mapper	665950.HMPREF1025_02680	Phage-related minor tail protein	NA
UHGV-0093881_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0093881_1	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0093881_1	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0093881_3	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0093881_3	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0093881_3	UniRef90	UniRef90_A0A354F516	Addiction module toxin, HicA family	NA
UHGV-0093881_3	eggNOG-mapper	877418.ATWV01000002_gene1129	mRNA binding	NA
UHGV-0093881_3	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0093881_3	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0093881_3	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0093881_4	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0093881_4	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0093881_4	UniRef90	UniRef90_UPI0018C81C90	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0093881_4	eggNOG-mapper	97138.C820_02004	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0093881_4	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0093881_4	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0093881_4	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0093881_6	PHROG	phrog_88	major tail protein	tail
UHGV-0093881_6	UniRef90	UniRef90_UPI00163A6AB8	phage tail protein	NA
UHGV-0093881_6	eggNOG-mapper	1238184.CM001792_gene2511	Phage tail tube protein	NA
UHGV-0093881_6	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0093881_6	COG	COG5492	NA	NA
UHGV-0093881_6	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0093881_7	Structural annotation	PF05657	NA	NA
UHGV-0093881_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0093881_8	eggNOG-mapper	1089553.Tph_c23110	TIGRFAM phage protein, HK97 gp10 family	NA
UHGV-0093881_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0093881_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0093881_8	Structural annotation	TIGR01725	NA	NA
UHGV-0093881_9	PHROG	phrog_25	head closure Hc1	connector
UHGV-0093881_9	UniRef90	UniRef90_A0A2S6FUR7	SPP1 family predicted phage head-tail adaptor	NA
UHGV-0093881_9	eggNOG-mapper	1408424.JHYI01000032_gene3819	Phage head-tail joining protein	NA
UHGV-0093881_9	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0093881_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0093881_9	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0093881_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0093881_10	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0093881_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0093881_12	UniRef90	UniRef90_A0A2V2FYC2	Phage major capsid protein	NA
UHGV-0093881_12	eggNOG-mapper	1007103.AFHW01000142_gene1299	Phage capsid family	NA
UHGV-0093881_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0093881_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0093881_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0093881_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0093881_13	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0093881_13	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0093881_13	UniRef90	UniRef90_A0A2V2G0Z1	Peptidase	NA
UHGV-0093881_13	eggNOG-mapper	1235799.C818_00440	Serine dehydrogenase proteinase	NA
UHGV-0093881_13	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0093881_13	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0093881_13	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0093881_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0093881_14	UniRef90	UniRef90_A0A2V2G1D0	Phage portal protein	NA
UHGV-0093881_14	eggNOG-mapper	189425.PGRAT_19330	Phage portal protein	NA
UHGV-0093881_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0093881_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0093881_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0093881_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0093881_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0093881_15	UniRef90	UniRef90_A0A2V2G2T2	Terminase large subunit	NA
UHGV-0093881_15	eggNOG-mapper	1295642.H839_15973	Phage Terminase	NA
UHGV-0093881_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0093881_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0093881_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0093881_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0093881_16	eggNOG-mapper	1329516.JPST01000016_gene392	Phage terminase, small subunit	NA
UHGV-0093881_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0093881_17	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0093881_17	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093881_17	UniRef90	UniRef90_A0A1Q6JKE6	HNH domain-containing protein	NA
UHGV-0093881_17	eggNOG-mapper	1396.DJ87_2698	HNH endonuclease	NA
UHGV-0093881_17	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0093881_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0093881_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0093881_18	UniRef90	UniRef90_A0A1Q6JK08	Sigma70_r4 domain-containing protein	NA
UHGV-0093881_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0093881_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0093881_19	UniRef90	UniRef90_A0A2V2FX13	Single-stranded DNA-binding protein	NA
UHGV-0093881_19	eggNOG-mapper	500635.MITSMUL_04510	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0093881_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0093881_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0093881_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0093881_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0093881_19	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0093881_21	PHROG	phrog_19280	NA	unknown function
UHGV-0093881_21	Pfam	PF19789	NA	DUF6273
UHGV-0093881_21	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0093881_21	Structural annotation	PF19789	NA	NA
UHGV-0093881_23	PHROG	phrog_15609	NA	unknown function
UHGV-0093881_23	UniRef90	UniRef90_UPI00040904D0	NA	NA
UHGV-0093881_23	eggNOG-mapper	1232428.CAVO010000003_gene1018	NA	NA
UHGV-0093881_23	Pfam	PF11300	NA	DUF3102
UHGV-0093881_23	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0093881_23	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0093881_25	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0093881_25	UniRef90	UniRef90_A0A5D3I7V8	DNA primase	NA
UHGV-0093881_25	eggNOG-mapper	760568.Desku_3516	DNA primase	NA
UHGV-0093881_25	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0093881_25	Structural annotation	PF06048, PF01807, PF18662, PF19898, MF_00974, MF_00016, TIGR01391, NF011296, COG5519, COG0358	NA	NA
UHGV-0093881_26	UniRef90	UniRef90_A0A1Q6JK14	HTH_17 domain-containing protein	NA
UHGV-0093881_26	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0093881_26	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0093881_27	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0093881_27	UniRef90	UniRef90_A0A1W1VXE5	Helix-turn-helix	NA
UHGV-0093881_27	eggNOG-mapper	246194.CHY_1694	Helix-turn-helix XRE-family like proteins	NA
UHGV-0093881_27	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0093881_27	Structural annotation	PF06892, NF040522, COG1476	NA	NA
UHGV-0093881_28	PHROG	phrog_4068	NA	unknown function
UHGV-0093881_28	Structural annotation	PF06657	NA	NA
UHGV-0093881_29	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0093881_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0093881_29	UniRef90	UniRef90_A0A3D2GZZ7	HTH cro/C1-type domain-containing protein	NA
UHGV-0093881_29	eggNOG-mapper	1297617.JPJD01000032_gene2038	NA	NA
UHGV-0093881_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093881_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0093881_29	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0093881_31	KOfam	K14059	int; integrase	NA
UHGV-0093881_31	PHROG	phrog_26960	NA	unknown function
UHGV-0093881_31	UniRef90	UniRef90_A0A8F5M7P2	Integrase	NA
UHGV-0093881_31	eggNOG-mapper	420246.GTNG_0752	Arm DNA-binding domain	NA
UHGV-0093881_31	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0093881_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0093881_32	KOfam	K14059	int; integrase	NA
UHGV-0093881_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0093881_32	UniRef90	UniRef90_R7IEV7	Site-specific recombinase XerD	NA
UHGV-0093881_32	eggNOG-mapper	537013.CLOSTMETH_02009	Belongs to the 'phage' integrase family	NA
UHGV-0093881_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0093881_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0093881_34	KOfam	K03072	secD; preprotein translocase subunit SecD	NA
UHGV-0093881_34	UniRef90	UniRef90_A0A7X6WHJ3	Protein translocase subunit SecD (Fragment)	NA
UHGV-0093881_34	eggNOG-mapper	697281.Mahau_0926	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA	NA
UHGV-0093881_34	Pfam	PF21760	Protein translocase subunit SecDF, P1 domain, N-terminal	SecD_1st
UHGV-0093881_34	COG	COG0342	Preprotein translocase subunit SecD	NA