UHGV-0093946

Genome information

Genome length 40,115 bps

CDS count 71

Completeness 100.00% (complete)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093946
vOTU ID	vOTU-045346
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_190285
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68
Jumbo phage	No

Genome content
Genome length	40,115 bps
GC content	51.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	90.12%
Average CDS length	514.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093946_1	PHROG	phrog_4433	NA	unknown function
UHGV-0093946_1	eggNOG-mapper	445970.ALIPUT_01221	DNA-templated transcription, initiation	NA
UHGV-0093946_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0093946_3	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0093946_3	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0093946_3	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0093946_3	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0093946_3	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0093946_3	Structural annotation	PF14297	NA	NA
UHGV-0093946_5	PHROG	phrog_4973	NA	unknown function
UHGV-0093946_5	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0093946_5	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0093946_5	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0093946_5	Structural annotation	PF14090, TIGR00373, COG4738	NA	NA
UHGV-0093946_6	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0093946_6	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0093946_6	UniRef90	UniRef90_A0A7G9WF80	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0093946_6	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0093946_6	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0093946_6	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0093946_6	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0093946_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0093946_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0093946_7	UniRef90	UniRef90_UPI001C02E52F	single-stranded DNA-binding protein	NA
UHGV-0093946_7	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0093946_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0093946_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0093946_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0093946_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0093946_7	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0093946_8	UniRef90	UniRef90_UPI001D05CADB	HNH endonuclease	NA
UHGV-0093946_8	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0093946_8	Pfam	PF13391	HNH endonuclease	HNH_2
UHGV-0093946_9	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0093946_9	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0093946_9	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0093946_9	Structural annotation	PF05772	NA	NA
UHGV-0093946_10	PHROG	phrog_14970	NA	unknown function
UHGV-0093946_10	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-0093946_10	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-0093946_10	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0093946_10	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0093946_10	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0093946_11	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0093946_11	UniRef90	UniRef90_UPI0015EBC975	siphovirus Gp157 family protein	NA
UHGV-0093946_11	eggNOG-mapper	397290.C810_05162	Siphovirus Gp157	NA
UHGV-0093946_11	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0093946_11	Structural annotation	PF05565	NA	NA
UHGV-0093946_14	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-0093946_15	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0093946_15	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0093946_16	Structural annotation	PF20432, NF041951, COG3655	NA	NA
UHGV-0093946_19	UniRef90	UniRef90_UPI001C1045C3	helix-turn-helix domain-containing protein	NA
UHGV-0093946_19	eggNOG-mapper	1211817.CCAT010000053_gene2103	Helix-turn-helix	NA
UHGV-0093946_19	Pfam	PF05339	NA	DUF739
UHGV-0093946_19	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0093946_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0093946_20	UniRef90	UniRef90_A0A3D3W9W9	HTH cro/C1-type domain-containing protein	NA
UHGV-0093946_20	eggNOG-mapper	658659.HMPREF0983_03304	Helix-turn-helix XRE-family like proteins	NA
UHGV-0093946_20	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0093946_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0093946_20	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0093946_21	UniRef90	UniRef90_A0A1Y4A0E8	SAP domain-containing protein	NA
UHGV-0093946_21	eggNOG-mapper	1280696.ATVY01000034_gene3237	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0093946_21	Structural annotation	PF12688	NA	NA
UHGV-0093946_22	PHROG	phrog_7974	NA	unknown function
UHGV-0093946_22	UniRef90	UniRef90_R6E243	NA	NA
UHGV-0093946_22	eggNOG-mapper	500635.MITSMUL_03827	NA	NA
UHGV-0093946_22	Pfam	PF14020	NA	DUF4236
UHGV-0093946_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093946_23	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0093946_24	KOfam	K14059	int; integrase	NA
UHGV-0093946_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0093946_24	UniRef90	UniRef90_A0A3D2HVQ9	Tyr recombinase domain-containing protein	NA
UHGV-0093946_24	eggNOG-mapper	1121344.JHZO01000004_gene1696	Phage integrase family	NA
UHGV-0093946_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0093946_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0093946_24	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0093946_26	Structural annotation	PF12510	NA	NA
UHGV-0093946_27	PHROG	phrog_20016	NA	unknown function
UHGV-0093946_27	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0093946_27	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0093946_27	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0093946_29	PHROG	phrog_16490	NA	unknown function
UHGV-0093946_29	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0093946_30	PHROG	phrog_22984	NA	unknown function
UHGV-0093946_31	PHROG	phrog_21718	NA	unknown function
UHGV-0093946_31	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0093946_32	PHROG	phrog_3754	NA	unknown function
UHGV-0093946_32	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0093946_33	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-0093946_34	PHROG	phrog_10091	holin	lysis
UHGV-0093946_34	UniRef90	UniRef90_A0A1Y4RHF4	Phage holin	NA
UHGV-0093946_34	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0093946_34	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0093946_34	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0093946_34	COG	COG5546	NA	NA
UHGV-0093946_34	Structural annotation	COG5546	NA	NA
UHGV-0093946_35	PHROG	phrog_4105	NA	unknown function
UHGV-0093946_35	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0093946_35	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0093946_36	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0093946_36	PHROG	phrog_894	endolysin	lysis
UHGV-0093946_36	UniRef90	UniRef90_R5EEQ7	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0093946_36	eggNOG-mapper	903814.ELI_0090	Peptidoglycan-binding domain 1 protein	NA
UHGV-0093946_36	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0093946_36	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0093946_36	COG	COG3108	NA	NA
UHGV-0093946_36	Structural annotation	PF08291, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0093946_37	eggNOG-mapper	994573.T472_0212005	NA	NA
UHGV-0093946_40	Structural annotation	PF14686, PF07210, PF21582, TIGR03000, TIGR04183, COG2512	NA	NA
UHGV-0093946_41	PHROG	phrog_9534	head protein	head and packaging
UHGV-0093946_41	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0093946_42	PHROG	phrog_538	minor tail protein	tail
UHGV-0093946_42	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0093946_42	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0093946_42	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0093946_42	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0093946_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0093946_43	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0093946_43	eggNOG-mapper	536232.CLM_2045	Phage tail protein	NA
UHGV-0093946_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-0093946_43	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0093946_44	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0093946_44	eggNOG-mapper	1504822.CCNO01000012_gene489	phage tail tape measure protein	NA
UHGV-0093946_44	COG	COG5412	Phage-related protein	NA
UHGV-0093946_44	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0093946_46	PHROG	phrog_18646	NA	unknown function
UHGV-0093946_46	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-0093946_47	PHROG	phrog_885	major tail protein	tail
UHGV-0093946_47	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0093946_47	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0093946_47	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0093946_48	Structural annotation	PF11367	NA	NA
UHGV-0093946_49	PHROG	phrog_17977	NA	unknown function
UHGV-0093946_49	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0093946_49	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0093946_49	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0093946_51	PHROG	phrog_544	major head protein	head and packaging
UHGV-0093946_51	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0093946_51	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0093946_51	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0093946_52	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0093946_52	Structural annotation	PF06810	NA	NA
UHGV-0093946_53	Structural annotation	PF18152	NA	NA
UHGV-0093946_54	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0093946_54	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0093946_54	COG	COG2369	NA	NA
UHGV-0093946_55	PHROG	phrog_8680	NA	unknown function
UHGV-0093946_55	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-0093946_55	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0093946_55	Pfam	PF14386	NA	DUF4417
UHGV-0093946_55	Structural annotation	PF14386	NA	NA
UHGV-0093946_57	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0093946_57	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0093946_57	eggNOG-mapper	1140001.I571_01837	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0093946_57	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0093946_57	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0093946_57	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0093946_58	Structural annotation	PF06442, MF_01194, NF000331, COG4014	NA	NA
UHGV-0093946_59	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0093946_59	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-0093946_59	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0093946_59	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0093946_59	COG	COG2369	NA	NA
UHGV-0093946_59	Structural annotation	PF04233, PF21814, TIGR01641, COG2369	NA	NA
UHGV-0093946_60	PHROG	phrog_64	portal protein	head and packaging
UHGV-0093946_60	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-0093946_60	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0093946_60	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0093946_60	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0093946_61	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0093946_61	PHROG	phrog_10250	NA	unknown function
UHGV-0093946_61	UniRef90	UniRef90_UPI0018AC3323	PBSX family phage terminase large subunit	NA
UHGV-0093946_61	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0093946_61	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0093946_61	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0093946_61	COG	COG1783	Phage terminase large subunit	NA
UHGV-0093946_61	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0093946_62	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-0093946_62	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0093946_62	Structural annotation	PF13542	NA	NA
UHGV-0093946_63	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0093946_63	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0093946_63	eggNOG-mapper	1347392.CCEZ01000015_gene2854	NA	NA
UHGV-0093946_63	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0093946_67	PHROG	phrog_3136	NA	unknown function
UHGV-0093946_67	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0093946_67	eggNOG-mapper	747.DR93_155	ASCH	NA
UHGV-0093946_67	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0093946_67	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0093946_69	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0093946_69	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0093946_69	UniRef90	UniRef90_A0A4Q7PJQ1	Lar family restriction alleviation protein	NA
UHGV-0093946_69	eggNOG-mapper	194949.Q7Y2K1_9CAUD	Restriction alleviation protein Lar	NA
UHGV-0093946_69	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0093946_69	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0093946_69	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0093946_69	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0093946_71	PHROG	phrog_27197	NA	unknown function
UHGV-0093946_71	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0093946_71	COG	COG5164	Transcription elongation factor SPT5	NA