UHGV-0093990

Genome information

Genome length 29,450 bps

CDS count 46

Completeness 83.71% (medium-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093990
vOTU ID	vOTU-042353
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_180145
BioSample	SAMEA3449159
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.71% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.32
Jumbo phage	No

Genome content
Genome length	29,450 bps
GC content	39.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.67%
Average CDS length	589.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093990_1	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0093990_1	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0093990_1	UniRef90	UniRef90_A0A1C6HHY1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0093990_1	eggNOG-mapper	411902.CLOBOL_03426	COG COG0338 Site-specific DNA methylase	NA
UHGV-0093990_1	PADLOC	MTase_II_00033	Type II methyltransferase	RM
UHGV-0093990_1	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0093990_1	COG	COG0338	DNA-adenine methylase	NA
UHGV-0093990_1	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-0093990_2	PHROG	phrog_21357	endolysin	lysis
UHGV-0093990_2	UniRef90	UniRef90_A0A373L0D7	CHAP domain-containing protein	NA
UHGV-0093990_2	eggNOG-mapper	693746.OBV_19030	CHAP domain	NA
UHGV-0093990_2	Pfam	PF05257	CHAP domain	CHAP
UHGV-0093990_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0093990_2	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0093990_2	Structural annotation	PF01471, PF00877, TIGR02594, TIGR03979, COG3942	NA	NA
UHGV-0093990_3	eggNOG-mapper	642492.Clole_0840	NA	NA
UHGV-0093990_3	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0093990_5	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0093990_5	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0093990_5	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0093990_6	PHROG	phrog_11105	NA	unknown function
UHGV-0093990_8	PHROG	phrog_18110	NA	unknown function
UHGV-0093990_8	UniRef90	UniRef90_A0A373KYA3	Prophage_tail domain-containing protein	NA
UHGV-0093990_8	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0093990_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0093990_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0093990_8	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0093990_8	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0093990_9	UniRef90	UniRef90_A0A1G4WVH7	Phage-related protein	NA
UHGV-0093990_9	eggNOG-mapper	1347392.CCEZ01000045_gene7	phage tail	NA
UHGV-0093990_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0093990_9	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0093990_10	PHROG	phrog_19074	NA	unknown function
UHGV-0093990_10	UniRef90	UniRef90_A0A373L0L9	Phage tail tape measure protein	NA
UHGV-0093990_10	eggNOG-mapper	33035.JPJF01000033_gene2265	Phage-related minor tail protein	NA
UHGV-0093990_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0093990_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0093990_10	COG	COG5283	Phage-related tail protein	NA
UHGV-0093990_10	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0093990_11	UniRef90	UniRef90_A0A1G4WVI6	Beta-lactamase inhibitor (BLIP)	NA
UHGV-0093990_11	eggNOG-mapper	1280390.CBQR020000086_gene1875	NA	NA
UHGV-0093990_12	PHROG	phrog_706	NA	unknown function
UHGV-0093990_12	UniRef90	UniRef90_A0A1G4WU45	Bacteriophage Gp15 protein	NA
UHGV-0093990_12	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-0093990_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0093990_12	Structural annotation	PF06854	NA	NA
UHGV-0093990_13	PHROG	phrog_4450	NA	unknown function
UHGV-0093990_13	UniRef90	UniRef90_A0A373KZ30	AP endonuclease	NA
UHGV-0093990_13	eggNOG-mapper	931276.Cspa_c07520	NA	NA
UHGV-0093990_13	Pfam	PF20378	NA	DUF6673
UHGV-0093990_13	Structural annotation	PF20378	NA	NA
UHGV-0093990_14	PHROG	phrog_3099	NA	unknown function
UHGV-0093990_14	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0093990_14	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-0093990_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0093990_15	PHROG	phrog_3266	tail completion	connector
UHGV-0093990_15	UniRef90	UniRef90_A0A373KYC6	Chloramphenicol resistance protein	NA
UHGV-0093990_15	eggNOG-mapper	641112.ACOK01000073_gene2899	NA	NA
UHGV-0093990_15	Structural annotation	PF12691	NA	NA
UHGV-0093990_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0093990_16	UniRef90	UniRef90_A0A413QH49	Capsid protein	NA
UHGV-0093990_16	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-0093990_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0093990_16	Structural annotation	PF11114	NA	NA
UHGV-0093990_17	PHROG	phrog_3366	NA	unknown function
UHGV-0093990_17	eggNOG-mapper	1151292.QEW_4533	NA	NA
UHGV-0093990_17	Pfam	PF20536	NA	DUF6751
UHGV-0093990_17	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-0093990_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0093990_18	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0093990_19	PHROG	phrog_212	major head protein	head and packaging
UHGV-0093990_19	UniRef90	UniRef90_A0A373KYA5	Phage capsid protein	NA
UHGV-0093990_19	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0093990_19	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0093990_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0093990_20	UniRef90	UniRef90_UPI001967FAB3	phage scaffolding protein	NA
UHGV-0093990_20	eggNOG-mapper	1401067.HMPREF0872_00300	Phage minor structural protein GP20	NA
UHGV-0093990_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0093990_20	Structural annotation	PF06810	NA	NA
UHGV-0093990_21	PHROG	phrog_419	NA	unknown function
UHGV-0093990_21	UniRef90	UniRef90_UPI001E40EA70	PGDYG domain-containing protein	NA
UHGV-0093990_21	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0093990_21	Pfam	PF14083	PGDYG protein	PGDYG
UHGV-0093990_25	PHROG	phrog_8684	NA	unknown function
UHGV-0093990_25	UniRef90	UniRef90_A0A374DV44	YopX domain-containing protein	NA
UHGV-0093990_25	eggNOG-mapper	563031.HMPREF0666_01127	YopX protein	NA
UHGV-0093990_25	Pfam	PF09643	YopX protein	YopX
UHGV-0093990_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0093990_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0093990_26	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093990_26	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-0093990_26	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0093990_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0093990_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0093990_26	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0093990_28	PHROG	phrog_824	NA	unknown function
UHGV-0093990_28	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0093990_28	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0093990_28	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0093990_28	Structural annotation	PF08774	NA	NA
UHGV-0093990_29	PHROG	phrog_24518	NA	unknown function
UHGV-0093990_29	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0093990_30	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0093990_30	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0093990_30	UniRef90	UniRef90_UPI001B3C6DA9	N-6 DNA methylase	NA
UHGV-0093990_30	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0093990_30	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0093990_30	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0093990_30	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0093990_30	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0093990_31	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0093990_31	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0093990_31	UniRef90	UniRef90_UPI000E47CAB6	ParB/RepB/Spo0J family partition protein	NA
UHGV-0093990_31	eggNOG-mapper	1408437.JNJN01000030_gene1074	Belongs to the ParB family	NA
UHGV-0093990_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0093990_31	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0093990_31	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0093990_31	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0093990_34	Structural annotation	COG1862	NA	NA
UHGV-0093990_35	PHROG	phrog_6058	NA	unknown function
UHGV-0093990_35	Structural annotation	NF033787	NA	NA
UHGV-0093990_36	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0093990_36	UniRef90	UniRef90_UPI0015F48AC0	Lar family restriction alleviation protein	NA
UHGV-0093990_36	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0093990_36	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0093990_37	Structural annotation	PF15597	NA	NA
UHGV-0093990_38	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0093990_38	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0093990_38	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0093990_38	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0093990_38	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0093990_38	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0093990_38	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0093990_38	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0093990_40	PHROG	phrog_585	NA	unknown function
UHGV-0093990_40	UniRef90	UniRef90_UPI00051C896C	NA	NA
UHGV-0093990_40	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0093990_40	Pfam	PF10711	NA	DUF2513
UHGV-0093990_40	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0093990_42	UniRef90	UniRef90_UPI001897B0FF	helix-turn-helix transcriptional regulator	NA
UHGV-0093990_42	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-0093990_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093990_42	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0093990_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0093990_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0093990_43	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0093990_43	eggNOG-mapper	272562.CA_C1559	sequence-specific DNA binding	NA
UHGV-0093990_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093990_43	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0093990_43	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0093990_44	PHROG	phrog_1914	NA	unknown function
UHGV-0093990_44	UniRef90	UniRef90_A0A374NDM7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0093990_44	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0093990_44	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0093990_44	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0093990_44	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0093990_45	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0093990_45	UniRef90	UniRef90_UPI000E52DA24	zinc ribbon domain-containing protein	NA
UHGV-0093990_45	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0093990_45	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0093990_45	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0093990_45	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0093990_46	KOfam	K14059	int; integrase	NA
UHGV-0093990_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0093990_46	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-0093990_46	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0093990_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0093990_46	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0093990_46	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA