UHGV-0093991

Genome information

Genome length 43,728 bps

CDS count 67

Completeness 100.00% (complete)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0093991
vOTU ID	vOTU-003267
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_180144
BioSample	SAMEA3449159
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.05
Jumbo phage	No

Genome content
Genome length	43,728 bps
GC content	50.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	91.35%
Average CDS length	598.93 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0093991_1	eggNOG-mapper	1203606.HMPREF1526_00589	Ami_2	NA
UHGV-0093991_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0093991_2	PHROG	phrog_1863	NA	unknown function
UHGV-0093991_2	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0093991_3	PHROG	phrog_10091	holin	lysis
UHGV-0093991_3	UniRef90	UniRef90_A0A1Y4RHF4	Phage holin	NA
UHGV-0093991_3	eggNOG-mapper	445975.COLSTE_02144	Bacteriophage holin	NA
UHGV-0093991_3	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0093991_3	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0093991_3	COG	COG5546	NA	NA
UHGV-0093991_3	Structural annotation	COG5546	NA	NA
UHGV-0093991_4	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0093991_5	PHROG	phrog_3754	NA	unknown function
UHGV-0093991_5	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0093991_6	PHROG	phrog_21718	NA	unknown function
UHGV-0093991_6	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0093991_7	PHROG	phrog_22984	NA	unknown function
UHGV-0093991_8	PHROG	phrog_16490	NA	unknown function
UHGV-0093991_8	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0093991_10	PHROG	phrog_20016	NA	unknown function
UHGV-0093991_10	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0093991_10	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0093991_10	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0093991_11	Structural annotation	PF12510	NA	NA
UHGV-0093991_12	KOfam	K14059	int; integrase	NA
UHGV-0093991_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0093991_12	UniRef90	UniRef90_R6I1Y0	Site-specific recombinase XerD	NA
UHGV-0093991_12	eggNOG-mapper	1384066.JAGT01000001_gene153	Phage integrase family	NA
UHGV-0093991_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0093991_12	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0093991_12	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0093991_13	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0093991_13	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0093991_13	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0093991_16	UniRef90	UniRef90_A0A8D9PDV2	DNA methyl phosphotriester repair domain protein	NA
UHGV-0093991_16	eggNOG-mapper	1392493.JIAB01000001_gene1404	repeat protein	NA
UHGV-0093991_16	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0093991_18	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0093991_18	eggNOG-mapper	46256.BBIK01000005_gene1058	PFAM helix-turn-helix domain protein	NA
UHGV-0093991_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093991_18	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0093991_18	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0093991_19	UniRef90	UniRef90_A0A8G0M6K7	Helix-turn-helix domain-containing protein	NA
UHGV-0093991_19	eggNOG-mapper	1497679.EP56_15175	Helix-turn-helix XRE-family like proteins	NA
UHGV-0093991_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093991_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0093991_19	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0093991_22	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-0093991_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0093991_22	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0093991_23	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0093991_23	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-0093991_25	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0093991_25	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-0093991_25	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-0093991_25	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0093991_25	Structural annotation	PF05565	NA	NA
UHGV-0093991_26	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0093991_26	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0093991_26	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0093991_26	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0093991_27	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0093991_27	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0093991_27	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0093991_27	Structural annotation	PF05772	NA	NA
UHGV-0093991_28	PHROG	phrog_7566	NA	unknown function
UHGV-0093991_28	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0093991_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0093991_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0093991_29	UniRef90	UniRef90_R6IDK3	Single-stranded DNA-binding protein	NA
UHGV-0093991_29	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0093991_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0093991_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0093991_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0093991_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0093991_29	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0093991_30	PHROG	phrog_16304	NA	unknown function
UHGV-0093991_30	UniRef90	UniRef90_A0A316T7M6	NA	NA
UHGV-0093991_30	eggNOG-mapper	1345695.CLSA_c35700	DnaD domain protein	NA
UHGV-0093991_30	Pfam	PF19808	NA	DUF6291
UHGV-0093991_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0093991_30	Structural annotation	PF19808	NA	NA
UHGV-0093991_31	PHROG	phrog_4433	NA	unknown function
UHGV-0093991_31	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0093991_31	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0093991_31	Structural annotation	NF007410	NA	NA
UHGV-0093991_32	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0093991_32	PHROG	phrog_30550	NA	unknown function
UHGV-0093991_32	UniRef90	UniRef90_A0A1Y4W1Z7	Hydrolase_2 domain-containing protein	NA
UHGV-0093991_32	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0093991_32	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0093991_32	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0093991_33	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0093991_33	UniRef90	UniRef90_UPI0006A41431	DNA cytosine methyltransferase	NA
UHGV-0093991_33	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0093991_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0093991_33	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0093991_40	PHROG	phrog_10714	NA	unknown function
UHGV-0093991_44	PHROG	phrog_18716	NA	unknown function
UHGV-0093991_44	UniRef90	UniRef90_A0A1J0GJP7	NA	NA
UHGV-0093991_44	eggNOG-mapper	665959.HMPREF1013_00856	NA	NA
UHGV-0093991_44	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0093991_44	Structural annotation	PF18909	NA	NA
UHGV-0093991_47	PHROG	phrog_4973	NA	unknown function
UHGV-0093991_47	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0093991_47	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0093991_47	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0093991_48	PHROG	phrog_25567	NA	unknown function
UHGV-0093991_48	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0093991_51	UniRef90	UniRef90_A0A3C0NNN3	HTH psq-type domain-containing protein	NA
UHGV-0093991_52	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0093991_52	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0093991_52	UniRef90	UniRef90_A0A3C0NMI6	Terminase-like family protein	NA
UHGV-0093991_52	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0093991_52	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0093991_52	COG	COG1783	Phage terminase large subunit	NA
UHGV-0093991_52	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0093991_53	PHROG	phrog_156	portal protein	head and packaging
UHGV-0093991_53	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0093991_53	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0093991_54	KOfam	K07584	NA	NA
UHGV-0093991_54	PHROG	phrog_4478	peptidase	other
UHGV-0093991_54	UniRef90	UniRef90_A0A6N9P4C8	Ribosomal-processing cysteine protease Prp	NA
UHGV-0093991_54	eggNOG-mapper	1321815.HMPREF9193_01055	Cysteine protease Prp	NA
UHGV-0093991_54	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0093991_54	COG	COG2868	NA	NA
UHGV-0093991_54	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0093991_55	PHROG	phrog_13908	NA	unknown function
UHGV-0093991_55	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0093991_56	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0093991_56	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0093991_56	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0093991_56	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0093991_56	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0093991_57	PHROG	phrog_15239	NA	unknown function
UHGV-0093991_58	PHROG	phrog_12105	NA	unknown function
UHGV-0093991_58	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0093991_59	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0093991_59	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0093991_59	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0093991_61	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0093991_62	PHROG	phrog_22978	NA	unknown function
UHGV-0093991_62	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0093991_63	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0093991_64	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0093991_64	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0093991_64	Pfam	PF19789	NA	DUF6273
UHGV-0093991_64	Structural annotation	PF19789, PF08244	NA	NA
UHGV-0093991_65	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0093991_65	Structural annotation	PF10618	NA	NA
UHGV-0093991_66	UniRef90	UniRef90_R6I1X1	COPII coat assembly protein SEC16 (Protein transport protein SEC16)	NA
UHGV-0093991_66	eggNOG-mapper	1203606.HMPREF1526_01926	NA	NA
UHGV-0093991_67	PHROG	phrog_21357	endolysin	lysis
UHGV-0093991_67	UniRef90	UniRef90_A0A417S7C3	CHAP domain-containing protein	NA
UHGV-0093991_67	eggNOG-mapper	742740.HMPREF9474_04289	Peptidoglycan-binding domain 1 protein	NA
UHGV-0093991_67	Pfam	PF05257	CHAP domain	CHAP
UHGV-0093991_67	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0093991_67	Structural annotation	PF06672, TIGR02594, COG4322	NA	NA