UHGV-0094062

Genome information

Genome length 31,075 bps

CDS count 54

Completeness 99.65% (high-quality)

geNomad score 0.9527

Prediction confidence Confident

Genome information
Genome ID	UHGV-0094062
vOTU ID	vOTU-008038
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_198793
BioSample	SAMEA3449271
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.65% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9527
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.07
Jumbo phage	No

Genome content
Genome length	31,075 bps
GC content	27.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.98%
Average CDS length	537.89 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0094062_2	UniRef90	UniRef90_A0A3B8SNC0	Peptidase_M78 domain-containing protein	NA
UHGV-0094062_2	eggNOG-mapper	697281.Mahau_2934	Zn peptidase	NA
UHGV-0094062_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0094062_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0094062_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0094062_3	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0094062_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0094062_3	UniRef90	UniRef90_A0A5J6PM70	XRE family transcriptional regulator	NA
UHGV-0094062_3	eggNOG-mapper	12360.Q8SDX2_BPPHA	sequence-specific DNA binding	NA
UHGV-0094062_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0094062_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0094062_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0094062_4	UniRef90	UniRef90_A0A139RFZ9	HTH cro/C1-type domain-containing protein	NA
UHGV-0094062_4	eggNOG-mapper	883081.HMPREF9698_01137	Helix-turn-helix XRE-family like proteins	NA
UHGV-0094062_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0094062_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0094062_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0094062_5	PHROG	phrog_989	NA	unknown function
UHGV-0094062_5	Structural annotation	PF11372	NA	NA
UHGV-0094062_7	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0094062_7	UniRef90	UniRef90_A0A0H4TJ49	DnaD	NA
UHGV-0094062_7	eggNOG-mapper	39103.U5U793_9CAUD	calcium ion binding	NA
UHGV-0094062_7	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0094062_7	Structural annotation	PF13730, MF_01909, NF040939, COG1846	NA	NA
UHGV-0094062_8	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0094062_8	Structural annotation	PF11417, PF08209	NA	NA
UHGV-0094062_9	UniRef90	UniRef90_A0A1Q6M1X1	HTH_11 domain-containing protein	NA
UHGV-0094062_12	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0094062_12	PHROG	phrog_216	integrase	integration and excision
UHGV-0094062_12	UniRef90	UniRef90_R7ID34	Tyr recombinase domain-containing protein	NA
UHGV-0094062_12	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-0094062_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0094062_12	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0094062_12	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0094062_14	eggNOG-mapper	445972.ANACOL_01837	NA	NA
UHGV-0094062_21	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0094062_23	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0094062_23	UniRef90	UniRef90_A0A385Q0Q2	NA	NA
UHGV-0094062_23	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0094062_23	Pfam	PF14359	NA	DUF4406
UHGV-0094062_23	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0094062_24	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0094062_24	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0094062_24	UniRef90	UniRef90_A0A843GTF7	RNA-splicing ligase RtcB	NA
UHGV-0094062_24	eggNOG-mapper	1410653.JHVC01000007_gene540	tRNA-splicing ligase RtcB	NA
UHGV-0094062_24	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0094062_24	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0094062_24	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0094062_26	PHROG	phrog_1238	phosphoheptose isomerase	moron, auxiliary metabolic gene and host takeover
UHGV-0094062_26	eggNOG-mapper	33898.JRHJ01000076_gene397	NA	NA
UHGV-0094062_26	Structural annotation	TIGR01689	NA	NA
UHGV-0094062_28	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0094062_28	Structural annotation	PF04545, MF_00674, NF008895, COG1595	NA	NA
UHGV-0094062_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0094062_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0094062_29	UniRef90	UniRef90_UPI000F06AC0F	HNH endonuclease	NA
UHGV-0094062_29	eggNOG-mapper	1280689.AUJC01000011_gene1516	endonuclease activity	NA
UHGV-0094062_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0094062_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0094062_31	PHROG	phrog_1066	NA	unknown function
UHGV-0094062_31	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-0094062_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0094062_32	UniRef90	UniRef90_A0A1Y3PHV0	Terminase	NA
UHGV-0094062_32	eggNOG-mapper	1089548.KI783301_gene3220	Terminase	NA
UHGV-0094062_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0094062_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0094062_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0094062_32	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0094062_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0094062_33	UniRef90	UniRef90_A0A7X7AAU2	Phage portal protein	NA
UHGV-0094062_33	eggNOG-mapper	397290.C810_00419	Phage portal protein	NA
UHGV-0094062_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0094062_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0094062_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0094062_35	KOfam	K06904	NA	NA
UHGV-0094062_35	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0094062_35	UniRef90	UniRef90_A0A1V5IPN6	Caudovirus prohead protease	NA
UHGV-0094062_35	eggNOG-mapper	1203606.HMPREF1526_01338	Caudovirus prohead serine protease	NA
UHGV-0094062_35	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0094062_35	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0094062_35	COG	COG3740	Phage head maturation protease	NA
UHGV-0094062_35	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0094062_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0094062_36	UniRef90	UniRef90_A0A1T4M146	Phage major capsid protein, HK97 family	NA
UHGV-0094062_36	eggNOG-mapper	1297617.JPJD01000020_gene308	Phage capsid family	NA
UHGV-0094062_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0094062_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0094062_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0094062_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0094062_37	PHROG	phrog_5223	neck protein	connector
UHGV-0094062_37	UniRef90	UniRef90_UPI000C06DEDD	head-tail connector protein	NA
UHGV-0094062_37	eggNOG-mapper	1280689.AUJC01000011_gene1523	NA	NA
UHGV-0094062_37	Structural annotation	TIGR01560	NA	NA
UHGV-0094062_38	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0094062_38	UniRef90	UniRef90_UPI0017807C43	phage head closure protein	NA
UHGV-0094062_38	eggNOG-mapper	1160721.RBI_I01580	head-tail adaptor	NA
UHGV-0094062_38	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0094062_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0094062_39	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0094062_39	Structural annotation	TIGR01725	NA	NA
UHGV-0094062_40	Structural annotation	PF11367	NA	NA
UHGV-0094062_41	PHROG	phrog_885	major tail protein	tail
UHGV-0094062_41	UniRef90	UniRef90_A0A7C6X6S5	Ig-like domain-containing protein	NA
UHGV-0094062_41	eggNOG-mapper	1160721.RBI_I01578	NA	NA
UHGV-0094062_41	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0094062_43	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0094062_43	eggNOG-mapper	1160721.RBI_I01576	tail tape measure protein, TP901	NA
UHGV-0094062_43	COG	COG5283	Phage-related tail protein	NA
UHGV-0094062_43	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0094062_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0094062_44	UniRef90	UniRef90_UPI0013D638FD	phage tail family protein	NA
UHGV-0094062_44	eggNOG-mapper	1540257.JQMW01000009_gene3383	NA	NA
UHGV-0094062_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0094062_44	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0094062_45	PHROG	phrog_5555	tail protein	tail
UHGV-0094062_45	UniRef90	UniRef90_R7ICZ9	Putative antireceptor	NA
UHGV-0094062_45	eggNOG-mapper	1408823.AXUS01000025_gene2634	Phage minor structural protein	NA
UHGV-0094062_45	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0094062_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0094062_45	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0094062_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0094062_45	COG	COG4926	Phage-related protein	NA
UHGV-0094062_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0094062_47	PHROG	phrog_24267	NA	unknown function
UHGV-0094062_47	eggNOG-mapper	469596.HMPREF9488_01321	tail collar domain protein	NA
UHGV-0094062_47	COG	COG4675	Phage tail collar domain	NA
UHGV-0094062_47	Structural annotation	COG4675	NA	NA
UHGV-0094062_48	PHROG	phrog_2712	tail fiber protein	tail
UHGV-0094062_48	Structural annotation	NF012201	NA	NA
UHGV-0094062_49	PHROG	phrog_1863	NA	unknown function
UHGV-0094062_49	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0094062_49	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0094062_50	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0094062_51	PHROG	phrog_918	NA	unknown function
UHGV-0094062_51	UniRef90	UniRef90_UPI000DEAEBAB	NA	NA
UHGV-0094062_51	eggNOG-mapper	469618.FVAG_01307	NA	NA
UHGV-0094062_51	Pfam	PF19791	NA	DUF6275
UHGV-0094062_51	Structural annotation	PF19791	NA	NA
UHGV-0094062_52	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0094062_52	PHROG	phrog_7698	endolysin	lysis
UHGV-0094062_52	UniRef90	UniRef90_A0A353JBB4	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0094062_52	eggNOG-mapper	1123263.AUKY01000023_gene1215	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-0094062_52	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0094062_52	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0094062_52	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0094062_52	Structural annotation	MF_04111, NF008758, COG5632	NA	NA
UHGV-0094062_53	UniRef90	UniRef90_R7M7W6	Polysacc_synt_C domain-containing protein	NA