UHGV-0094262

Genome information

Genome length 39,269 bps

CDS count 54

Completeness 99.36% (high-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-0094262
vOTU ID	vOTU-071783
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_176684
BioSample	SAMEA3449193
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.36% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.01
Jumbo phage	No

Genome content
Genome length	39,269 bps
GC content	56.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.90%
Average CDS length	678.28 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0094262_1	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0094262_1	UniRef90	UniRef90_A0A4U7JF39	Abi family protein	NA
UHGV-0094262_1	eggNOG-mapper	888746.HMPREF9180_0753	Abi-like protein	NA
UHGV-0094262_1	PADLOC	AbiD	AbiD	Abi
UHGV-0094262_1	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0094262_1	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0094262_1	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0094262_3	PHROG	phrog_20258	NA	unknown function
UHGV-0094262_3	eggNOG-mapper	665956.HMPREF1032_02710	NA	NA
UHGV-0094262_4	PHROG	phrog_4105	NA	unknown function
UHGV-0094262_4	eggNOG-mapper	1687.BCOR_0969	NA	NA
UHGV-0094262_5	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-0094262_5	UniRef90	UniRef90_G9RZC7	Peptidase_M23 domain-containing protein	NA
UHGV-0094262_5	eggNOG-mapper	665956.HMPREF1032_01628	NA	NA
UHGV-0094262_5	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0094262_5	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0094262_6	PHROG	phrog_134	NA	unknown function
UHGV-0094262_6	UniRef90	UniRef90_A0A372V0Q1	XkdX family protein	NA
UHGV-0094262_6	eggNOG-mapper	697281.Mahau_0596	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0094262_6	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0094262_6	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0094262_6	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0094262_7	PHROG	phrog_419	NA	unknown function
UHGV-0094262_7	UniRef90	UniRef90_A0A1L5L3J8	PGDYG protein (Fragment)	NA
UHGV-0094262_7	eggNOG-mapper	864563.HMPREF9166_1012	NA	NA
UHGV-0094262_7	Structural annotation	PF14083	NA	NA
UHGV-0094262_8	PHROG	phrog_24451	NA	unknown function
UHGV-0094262_8	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-0094262_9	PHROG	phrog_4492	tail fiber protein	tail
UHGV-0094262_9	eggNOG-mapper	1304866.K413DRAFT_0769	NA	NA
UHGV-0094262_10	PHROG	phrog_18725	NA	unknown function
UHGV-0094262_10	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-0094262_11	PHROG	phrog_13879	NA	unknown function
UHGV-0094262_11	eggNOG-mapper	1235800.C819_00474	NA	NA
UHGV-0094262_11	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0094262_12	PHROG	phrog_1194	NA	unknown function
UHGV-0094262_12	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0094262_12	Pfam	PF20458	NA	DUF6711
UHGV-0094262_12	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0094262_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0094262_13	UniRef90	UniRef90_R5A122	ETS domain-containing protein	NA
UHGV-0094262_13	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0094262_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0094262_14	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0094262_14	UniRef90	UniRef90_UPI0019678976	toxin Bro	NA
UHGV-0094262_14	eggNOG-mapper	526218.Sterm_3917	BRO family, N-terminal domain	NA
UHGV-0094262_14	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0094262_14	COG	COG3617	Prophage antirepressor	NA
UHGV-0094262_14	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0094262_17	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0094262_17	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0094262_17	UniRef90	UniRef90_UPI0019687DF4	helix-turn-helix domain-containing protein	NA
UHGV-0094262_17	eggNOG-mapper	1117108.PAALTS15_13457	Transcriptional regulator	NA
UHGV-0094262_17	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0094262_17	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0094262_17	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0094262_18	PHROG	phrog_2546	NA	unknown function
UHGV-0094262_18	UniRef90	UniRef90_UPI0019681727	zinc ribbon domain-containing protein	NA
UHGV-0094262_18	eggNOG-mapper	1582156.A0A0A8WFW4_9CAUD	NA	NA
UHGV-0094262_18	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0094262_18	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0094262_19	PHROG	phrog_706	NA	unknown function
UHGV-0094262_19	UniRef90	UniRef90_UPI0019671E36	Gp15 family bacteriophage protein	NA
UHGV-0094262_19	eggNOG-mapper	1226322.HMPREF1545_00058	Bacteriophage Gp15 protein	NA
UHGV-0094262_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0094262_19	Structural annotation	PF06854	NA	NA
UHGV-0094262_20	PHROG	phrog_11299	NA	unknown function
UHGV-0094262_20	UniRef90	UniRef90_UPI001C03A209	V-type proton ATPase subunit E	NA
UHGV-0094262_20	eggNOG-mapper	411471.SUBVAR_06935	NA	NA
UHGV-0094262_21	PHROG	phrog_3099	NA	unknown function
UHGV-0094262_21	eggNOG-mapper	411471.SUBVAR_06936	NA	NA
UHGV-0094262_21	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0094262_22	PHROG	phrog_3266	tail completion	connector
UHGV-0094262_22	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0094262_22	Structural annotation	PF20765	NA	NA
UHGV-0094262_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0094262_23	UniRef90	UniRef90_UPI001967B4B3	minor capsid protein	NA
UHGV-0094262_23	eggNOG-mapper	999411.HMPREF1092_03318	Minor capsid protein	NA
UHGV-0094262_23	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0094262_23	Structural annotation	PF11114	NA	NA
UHGV-0094262_24	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-0094262_25	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0094262_25	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-0094262_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0094262_26	UniRef90	UniRef90_UPI001966F90F	phage major capsid protein	NA
UHGV-0094262_26	eggNOG-mapper	999413.HMPREF1094_00215	Phage capsid family	NA
UHGV-0094262_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0094262_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0094262_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0094262_26	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0094262_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0094262_27	UniRef90	UniRef90_UPI001967FAB3	phage scaffolding protein	NA
UHGV-0094262_27	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-0094262_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0094262_27	Structural annotation	PF06810	NA	NA
UHGV-0094262_28	UniRef90	UniRef90_R6AQU3	Conserved protein	NA
UHGV-0094262_28	eggNOG-mapper	1123489.AUAN01000010_gene361	NA	NA
UHGV-0094262_28	Structural annotation	PF20111	NA	NA
UHGV-0094262_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0094262_30	UniRef90	UniRef90_UPI00196795ED	phage minor capsid protein	NA
UHGV-0094262_30	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0094262_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0094262_30	COG	COG2369	NA	NA
UHGV-0094262_30	Structural annotation	PF06152	NA	NA
UHGV-0094262_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0094262_31	UniRef90	UniRef90_UPI0019672DA7	capsid protein	NA
UHGV-0094262_31	eggNOG-mapper	748224.HMPREF9436_03340	NA	NA
UHGV-0094262_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0094262_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0094262_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0094262_32	UniRef90	UniRef90_UPI001968A370	PBSX family phage terminase large subunit	NA
UHGV-0094262_32	eggNOG-mapper	1120746.CCNL01000014_gene2093	DNA packaging	NA
UHGV-0094262_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0094262_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0094262_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0094262_32	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0094262_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0094262_33	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0094262_33	UniRef90	UniRef90_UPI001967980A	terminase small subunit	NA
UHGV-0094262_33	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-0094262_33	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0094262_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0094262_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0094262_33	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0094262_34	UniRef90	UniRef90_A0A3A9EZN6	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0094262_34	eggNOG-mapper	1121335.Clst_0383	NA	NA
UHGV-0094262_34	Structural annotation	PF04545	NA	NA
UHGV-0094262_35	UniRef90	UniRef90_UPI0019673783	helix-turn-helix domain-containing protein	NA
UHGV-0094262_38	UniRef90	UniRef90_A0A355YQJ9	zinc_ribbon_2 domain-containing protein	NA
UHGV-0094262_39	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0094262_39	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0094262_39	UniRef90	UniRef90_UPI001967BB42	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0094262_39	eggNOG-mapper	742738.HMPREF9460_01358	Endodeoxyribonuclease RusA	NA
UHGV-0094262_39	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0094262_39	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0094262_39	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0094262_40	PHROG	phrog_16687	NA	unknown function
UHGV-0094262_40	eggNOG-mapper	1123511.KB905868_gene197	NA	NA
UHGV-0094262_41	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0094262_41	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0094262_41	UniRef90	UniRef90_UPI001967B211	AAA family ATPase	NA
UHGV-0094262_41	eggNOG-mapper	552396.HMPREF0863_02435	Primase C terminal 2 (PriCT-2)	NA
UHGV-0094262_41	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0094262_41	Pfam	PF13481	AAA domain	AAA_25
UHGV-0094262_41	COG	COG3598	RecA-family ATPase	NA
UHGV-0094262_41	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0094262_42	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0094262_42	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0094262_42	UniRef90	UniRef90_UPI0019672759	DEAD/DEAH box helicase	NA
UHGV-0094262_42	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-0094262_42	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0094262_42	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0094262_42	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0094262_42	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0094262_42	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0094262_43	PHROG	phrog_2698	NA	unknown function
UHGV-0094262_43	UniRef90	UniRef90_UPI001966DD81	NA	NA
UHGV-0094262_43	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-0094262_43	Structural annotation	PF05037	NA	NA
UHGV-0094262_44	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0094262_44	UniRef90	UniRef90_UPI00196823E0	AAA family ATPase	NA
UHGV-0094262_44	eggNOG-mapper	645991.Sgly_0321	AAA domain	NA
UHGV-0094262_44	Pfam	PF13479	AAA domain	AAA_24
UHGV-0094262_44	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0094262_45	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0094262_45	PHROG	phrog_1499	NA	unknown function
UHGV-0094262_45	UniRef90	UniRef90_UPI001967B614	AAA family ATPase	NA
UHGV-0094262_45	eggNOG-mapper	1235798.C817_04766	AAA ATPase domain	NA
UHGV-0094262_45	Pfam	PF13476	AAA domain	AAA_23
UHGV-0094262_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0094262_45	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0094262_46	PHROG	phrog_1733	NA	unknown function
UHGV-0094262_46	UniRef90	UniRef90_UPI00196846D9	cell envelope integrity protein TolA	NA
UHGV-0094262_46	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-0094262_46	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0094262_46	Structural annotation	PF03677	NA	NA
UHGV-0094262_47	UniRef90	UniRef90_UPI001967278A	NA	NA
UHGV-0094262_47	eggNOG-mapper	97139.C824_03650	NA	NA
UHGV-0094262_47	Pfam	PF12957	NA	DUF3846
UHGV-0094262_47	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0094262_47	Structural annotation	PF12957	NA	NA
UHGV-0094262_49	Structural annotation	PF12728	NA	NA
UHGV-0094262_51	UniRef90	UniRef90_UPI001967CDDD	helix-turn-helix transcriptional regulator	NA
UHGV-0094262_51	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0094262_52	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0094262_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0094262_52	UniRef90	UniRef90_UPI001966F1BB	helix-turn-helix transcriptional regulator	NA
UHGV-0094262_52	eggNOG-mapper	1297617.JPJD01000059_gene2644	addiction module antidote protein HigA	NA
UHGV-0094262_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0094262_52	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0094262_52	Structural annotation	PF12844, MF_00584, NF041951, COG1476	NA	NA
UHGV-0094262_53	PHROG	phrog_87	metallo-protease	other
UHGV-0094262_53	UniRef90	UniRef90_UPI001966F635	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0094262_53	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0094262_53	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0094262_53	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0094262_53	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0094262_54	KOfam	K14059	int; integrase	NA
UHGV-0094262_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0094262_54	UniRef90	UniRef90_UPI001966D9E7	site-specific integrase	NA
UHGV-0094262_54	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0094262_54	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0094262_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0094262_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0094262_54	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA