UHGV-0094474

Genome information

Genome length 16,808 bps

CDS count 24

Completeness 91.44% (high-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0094474
vOTU ID	vOTU-063340
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_201066
BioSample	SAMEA3449328
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.44% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.6
Jumbo phage	No

Genome content
Genome length	16,808 bps
GC content	36.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	91.22%
Average CDS length	644.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0094474_2	Structural annotation	PF07866	NA	NA
UHGV-0094474_5	PHROG	phrog_6370	dsDNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0094474_5	Structural annotation	PF17548	NA	NA
UHGV-0094474_6	Structural annotation	PF17427	NA	NA
UHGV-0094474_8	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0094474_8	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0094474_8	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0094474_8	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0094474_8	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0094474_8	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0094474_9	Structural annotation	PF03685, MF_00342	NA	NA
UHGV-0094474_10	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0094474_10	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0094474_10	UniRef90	UniRef90_R6LQ85	Deoxyuridine 5'-triphosphate pyrophosphatase	NA
UHGV-0094474_10	eggNOG-mapper	1218173.BALCAV_0213315	Deoxyuridine 5'-triphosphate	NA
UHGV-0094474_10	Pfam	PF00692	dUTPase	dUTPase
UHGV-0094474_10	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0094474_10	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0094474_16	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0094474_16	UniRef90	UniRef90_A0A3G3LYS5	Lower collar protein	NA
UHGV-0094474_16	eggNOG-mapper	338473.A6XAD8_9CAUD	NA	NA
UHGV-0094474_17	PHROG	phrog_2038	upper collar connector	connector
UHGV-0094474_17	UniRef90	UniRef90_A6XAD7	Upper collar	NA
UHGV-0094474_17	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-0094474_17	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0094474_17	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0094474_18	PHROG	phrog_2248	tail protein	tail
UHGV-0094474_18	UniRef90	UniRef90_A0A843GTI5	Caud_tail_N domain-containing protein	NA
UHGV-0094474_18	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0094474_18	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0094474_18	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0094474_18	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0094474_19	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0094474_19	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0094474_19	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0094474_19	Structural annotation	PF05065, PF02368, MF_04119, NF033394, COG4653	NA	NA
UHGV-0094474_21	PHROG	phrog_11037	NA	unknown function
UHGV-0094474_21	UniRef90	UniRef90_A0A413K5U9	CHAP domain-containing protein	NA
UHGV-0094474_21	eggNOG-mapper	552396.HMPREF0863_01358	CHAP domain	NA
UHGV-0094474_21	Pfam	PF05257	CHAP domain	CHAP
UHGV-0094474_21	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0094474_21	COG	COG3942	Surface antigen	NA
UHGV-0094474_21	Structural annotation	PF18013, COG3942	NA	NA
UHGV-0094474_22	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0094474_22	Structural annotation	PF01471	NA	NA
UHGV-0094474_24	PHROG	phrog_2150	terminase	head and packaging
UHGV-0094474_24	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-0094474_24	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0094474_24	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0094474_24	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA