UHGV-0094492

Genome information

Genome length 37,822 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0094492
vOTU ID	vOTU-045350
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_178411
BioSample	SAMEA3449188
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.58
Jumbo phage	No

Genome content
Genome length	37,822 bps
GC content	52.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	95.65%
Average CDS length	639.42 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0094492_3	PHROG	phrog_27545	NA	unknown function
UHGV-0094492_3	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0094492_3	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0094492_3	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0094492_4	PHROG	phrog_937	hemolysin	other
UHGV-0094492_4	eggNOG-mapper	1235835.C814_01939	NA	NA
UHGV-0094492_5	eggNOG-mapper	1347392.CCEZ01000043_gene405	NA	NA
UHGV-0094492_6	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0094492_6	PHROG	phrog_435	endolysin	lysis
UHGV-0094492_6	UniRef90	UniRef90_A0A2V2GRI9	MurNAc-LAA domain-containing protein	NA
UHGV-0094492_6	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0094492_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0094492_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0094492_6	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0094492_7	Structural annotation	MF_01304	NA	NA
UHGV-0094492_8	PHROG	phrog_14770	NA	unknown function
UHGV-0094492_8	UniRef90	UniRef90_A0A8D9UHE1	PolyVal ADP-ribosyltransferase	NA
UHGV-0094492_8	eggNOG-mapper	445971.ANASTE_00728	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair	NA
UHGV-0094492_8	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0094492_8	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0094492_9	KOfam	K14059	int; integrase	NA
UHGV-0094492_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0094492_9	UniRef90	UniRef90_A0A8D9PE11	Integrase	NA
UHGV-0094492_9	eggNOG-mapper	693746.OBV_01970	Phage integrase family	NA
UHGV-0094492_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0094492_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0094492_9	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0094492_13	UniRef90	UniRef90_UPI001E2EC555	helix-turn-helix domain-containing protein	NA
UHGV-0094492_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0094492_13	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0094492_15	UniRef90	UniRef90_UPI0018995761	helix-turn-helix transcriptional regulator	NA
UHGV-0094492_15	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0094492_16	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0094492_17	Structural annotation	NF041588	NA	NA
UHGV-0094492_21	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0094492_21	UniRef90	UniRef90_UPI001E5A6693	NA	NA
UHGV-0094492_21	eggNOG-mapper	1507.HMPREF0262_00431	NA	NA
UHGV-0094492_21	Pfam	PF06378	NA	DUF1071
UHGV-0094492_21	Structural annotation	PF06378, COG4712	NA	NA
UHGV-0094492_22	PHROG	phrog_1389	NA	unknown function
UHGV-0094492_22	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-0094492_22	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0094492_23	PHROG	phrog_7566	NA	unknown function
UHGV-0094492_23	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0094492_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0094492_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0094492_24	UniRef90	UniRef90_UPI001E2A5A6F	single-stranded DNA-binding protein	NA
UHGV-0094492_24	eggNOG-mapper	1235835.C814_01372	Single-stranded DNA-binding protein	NA
UHGV-0094492_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0094492_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0094492_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0094492_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0094492_24	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0094492_25	PHROG	phrog_16304	NA	unknown function
UHGV-0094492_25	UniRef90	UniRef90_UPI001E560709	NA	NA
UHGV-0094492_25	eggNOG-mapper	290402.Cbei_3733	DnaD domain protein	NA
UHGV-0094492_25	Pfam	PF19808	NA	DUF6291
UHGV-0094492_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0094492_25	Structural annotation	PF19808	NA	NA
UHGV-0094492_26	PHROG	phrog_9804	NA	unknown function
UHGV-0094492_26	UniRef90	UniRef90_UPI001E312ACC	replicative helicase loader/inhibitor	NA
UHGV-0094492_26	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0094492_26	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0094492_26	Structural annotation	PF11417	NA	NA
UHGV-0094492_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0094492_27	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0094492_27	UniRef90	UniRef90_A0A498CNH4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0094492_27	eggNOG-mapper	1226322.HMPREF1545_04070	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0094492_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0094492_27	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0094492_28	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0094492_28	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0094492_28	UniRef90	UniRef90_A0A2V2GLN0	DNA methyltransferase (Fragment)	NA
UHGV-0094492_28	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-0094492_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0094492_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0094492_28	Structural annotation	PF00145, MF_00341, TIGR00675, COG0270	NA	NA
UHGV-0094492_30	Structural annotation	TIGR04381	NA	NA
UHGV-0094492_37	PHROG	phrog_38832	NA	unknown function
UHGV-0094492_37	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0094492_37	Structural annotation	PF11717	NA	NA
UHGV-0094492_42	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0094492_42	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0094492_42	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0094492_42	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0094492_44	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0094492_44	UniRef90	UniRef90_A0A2V2GLL9	Metallophos_2 domain-containing protein	NA
UHGV-0094492_44	eggNOG-mapper	1150474.JQJI01000006_gene784	metallophosphoesterase	NA
UHGV-0094492_44	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0094492_44	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0094492_44	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0094492_45	UniRef90	UniRef90_A0A8D9UHF6	NA	NA
UHGV-0094492_45	eggNOG-mapper	272630.MexAM1_META1p3985	NA	NA
UHGV-0094492_45	Pfam	PF18932	NA	DUF5681
UHGV-0094492_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0094492_46	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0094492_46	UniRef90	UniRef90_A0A8D9UH35	Large subunit terminase	NA
UHGV-0094492_46	eggNOG-mapper	1232449.BAHV02000016_gene1824	NA	NA
UHGV-0094492_46	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0094492_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-0094492_46	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0094492_48	PHROG	phrog_156	portal protein	head and packaging
UHGV-0094492_48	UniRef90	UniRef90_A0A8D9UHD1	Portal protein	NA
UHGV-0094492_48	eggNOG-mapper	1121091.AUMP01000003_gene2583	NA	NA
UHGV-0094492_48	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0094492_48	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0094492_49	UniRef90	UniRef90_A0A8D9UHD6	Ogr/Delta-like zinc finger	NA
UHGV-0094492_49	Structural annotation	PF20020	NA	NA
UHGV-0094492_50	UniRef90	UniRef90_A0A8D9UHB9	Non-structural protein 5	NA
UHGV-0094492_51	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0094492_51	UniRef90	UniRef90_A0A8D9UHB3	Major capsid protein	NA
UHGV-0094492_51	eggNOG-mapper	696281.Desru_1092	NA	NA
UHGV-0094492_51	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0094492_51	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0094492_52	PHROG	phrog_15239	NA	unknown function
UHGV-0094492_54	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0094492_54	eggNOG-mapper	665956.HMPREF1032_03917	NA	NA
UHGV-0094492_54	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0094492_55	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0094492_55	PHROG	phrog_819	tail protein	tail
UHGV-0094492_55	UniRef90	UniRef90_A0A8D9PE13	Virion structural protein	NA
UHGV-0094492_55	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0094492_55	COG	COG4675	Phage tail collar domain	NA
UHGV-0094492_57	Pfam	PF13964	Kelch motif	Kelch_6