UHGV-0094570

Genome information

Genome length 29,667 bps

CDS count 42

Completeness 70.32% (medium-quality)

geNomad score 0.9826

Prediction confidence Confident

Genome information
Genome ID	UHGV-0094570
vOTU ID	vOTU-035806
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_194893
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.32% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9826
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.76
Jumbo phage	No

Genome content
Genome length	29,667 bps
GC content	52.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	92.78%
Average CDS length	658.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0094570_1	UniRef90	UniRef90_A0A3D5TGL9	Peptidase	NA
UHGV-0094570_1	eggNOG-mapper	411902.CLOBOL_06844	Transglutaminase-like superfamily	NA
UHGV-0094570_1	Pfam	PF01841	Transglutaminase-like superfamily	Transglut_core
UHGV-0094570_1	COG	COG5279	Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain	NA
UHGV-0094570_2	PHROG	phrog_2649	endolysin	lysis
UHGV-0094570_2	UniRef90	UniRef90_A0A3D5TIN8	PG_binding_1 domain-containing protein	NA
UHGV-0094570_2	eggNOG-mapper	1321778.HMPREF1982_00101	L,D-transpeptidase catalytic domain	NA
UHGV-0094570_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0094570_2	COG	COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	NA
UHGV-0094570_2	Structural annotation	PF01471, TIGR02869, COG3409	NA	NA
UHGV-0094570_3	PHROG	phrog_372	tail protein	tail
UHGV-0094570_3	UniRef90	UniRef90_A0A1C5RHT6	Phage-related holin (Lysis protein)	NA
UHGV-0094570_3	eggNOG-mapper	1235796.C815_00905	NA	NA
UHGV-0094570_3	Pfam	PF05895	NA	DUF859
UHGV-0094570_3	Structural annotation	PF05895, PF08931, MF_04116, NF010681, COG3291	NA	NA
UHGV-0094570_4	PHROG	phrog_6616	tail protein	tail
UHGV-0094570_4	UniRef90	UniRef90_UPI0007AE71C3	gp58-like family protein	NA
UHGV-0094570_4	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0094570_4	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0094570_5	PHROG	phrog_1194	NA	unknown function
UHGV-0094570_5	UniRef90	UniRef90_A0A4U9RD70	Lj965 prophage protein	NA
UHGV-0094570_5	eggNOG-mapper	469596.HMPREF9488_01317	NA	NA
UHGV-0094570_5	Pfam	PF20458	NA	DUF6711
UHGV-0094570_5	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0094570_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0094570_6	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0094570_6	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0094570_6	COG	COG1511	NA	NA
UHGV-0094570_6	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0094570_7	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0094570_8	PHROG	phrog_706	NA	unknown function
UHGV-0094570_8	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0094570_8	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0094570_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0094570_8	Structural annotation	PF06854	NA	NA
UHGV-0094570_9	PHROG	phrog_11299	NA	unknown function
UHGV-0094570_9	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0094570_9	Structural annotation	PF10666	NA	NA
UHGV-0094570_10	PHROG	phrog_3099	NA	unknown function
UHGV-0094570_10	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0094570_10	Structural annotation	TIGR02126	NA	NA
UHGV-0094570_11	PHROG	phrog_3266	tail completion	connector
UHGV-0094570_11	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0094570_11	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0094570_11	Structural annotation	PF12691	NA	NA
UHGV-0094570_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0094570_12	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0094570_12	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0094570_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0094570_12	Structural annotation	PF11114	NA	NA
UHGV-0094570_13	PHROG	phrog_3366	NA	unknown function
UHGV-0094570_13	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0094570_13	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0094570_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0094570_14	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0094570_15	PHROG	phrog_544	major head protein	head and packaging
UHGV-0094570_15	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0094570_15	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0094570_15	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0094570_16	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0094570_16	Structural annotation	PF06810	NA	NA
UHGV-0094570_17	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0094570_17	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0094570_17	UniRef90	UniRef90_A0A6N2R468	Bro-N domain-containing protein	NA
UHGV-0094570_17	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0094570_17	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0094570_17	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0094570_17	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0094570_19	PHROG	phrog_3896	NA	unknown function
UHGV-0094570_19	eggNOG-mapper	476272.RUMHYD_01985	NA	NA
UHGV-0094570_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0094570_20	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0094570_20	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0094570_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0094570_20	COG	COG2369	NA	NA
UHGV-0094570_20	Structural annotation	PF06152	NA	NA
UHGV-0094570_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0094570_21	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0094570_21	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0094570_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0094570_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0094570_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0094570_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0094570_22	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0094570_22	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0094570_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0094570_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0094570_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0094570_22	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0094570_23	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0094570_23	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0094570_23	Structural annotation	PF13542	NA	NA
UHGV-0094570_24	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0094570_24	Structural annotation	TIGR01636	NA	NA
UHGV-0094570_28	Structural annotation	PF04570	NA	NA
UHGV-0094570_29	PHROG	phrog_3136	NA	unknown function
UHGV-0094570_29	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0094570_29	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0094570_29	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0094570_29	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0094570_30	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0094570_30	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0094570_30	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0094570_31	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0094570_34	PHROG	phrog_22529	NA	unknown function
UHGV-0094570_34	UniRef90	UniRef90_A0A810Q1V0	3D domain-containing protein	NA
UHGV-0094570_34	eggNOG-mapper	411463.EUBVEN_00667	3D domain	NA
UHGV-0094570_34	Pfam	PF06725	3D domain	3D
UHGV-0094570_34	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0094570_34	Structural annotation	PF06725, NF040670, COG3584	NA	NA
UHGV-0094570_35	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0094570_35	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0094570_35	UniRef90	UniRef90_A0A2U1CFM2	Methyltransferase	NA
UHGV-0094570_35	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0094570_35	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0094570_35	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0094570_35	COG	COG0863	DNA modification methylase	NA
UHGV-0094570_35	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0094570_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0094570_37	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0094570_37	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0094570_37	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0094570_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0094570_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0094570_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0094570_39	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0094570_39	UniRef90	UniRef90_A0A416NY06	Radical SAM protein	NA
UHGV-0094570_39	eggNOG-mapper	1235797.C816_00412	NA	NA
UHGV-0094570_39	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0094570_39	Structural annotation	MF_01865, NF010916, COG0621	NA	NA
UHGV-0094570_40	Structural annotation	TIGR00122, COG1654	NA	NA
UHGV-0094570_41	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0094570_41	UniRef90	UniRef90_A0A3E2U1Y9	DNA cytosine methyltransferase	NA
UHGV-0094570_41	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0094570_41	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0094570_41	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0094570_42	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0094570_42	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0094570_42	UniRef90	UniRef90_A0A1V5S1R5	DNA replication protein DnaC	NA
UHGV-0094570_42	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0094570_42	COG	COG1484	DNA replication protein DnaC	NA