UHGV-0094573

Genome information

Genome length 34,492 bps

CDS count 48

Completeness 97.34% (high-quality)

geNomad score 0.9730

Prediction confidence Confident

Genome information
Genome ID	UHGV-0094573
vOTU ID	vOTU-007882
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_194888
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.34% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9730
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.62
Jumbo phage	No

Genome content
Genome length	34,492 bps
GC content	41.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.54%
Average CDS length	670.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0094573_1	PHROG	phrog_11541	NA	unknown function
UHGV-0094573_1	UniRef90	UniRef90_UPI001E3B00C2	SGNH/GDSL hydrolase family protein	NA
UHGV-0094573_1	eggNOG-mapper	243265.plu2328	lipolytic protein G-D-S-L family	NA
UHGV-0094573_1	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0094573_1	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0094573_2	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0094573_2	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0094573_3	PHROG	phrog_11037	NA	unknown function
UHGV-0094573_3	UniRef90	UniRef90_A0A1Q6K9M8	NlpC/P60 domain-containing protein	NA
UHGV-0094573_3	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0094573_3	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0094573_3	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0094573_3	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0094573_3	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0094573_4	PHROG	phrog_13289	tail protein	tail
UHGV-0094573_4	UniRef90	UniRef90_D4M5A0	Phage minor structural protein, N-terminal region	NA
UHGV-0094573_4	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0094573_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0094573_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0094573_4	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0094573_4	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0094573_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0094573_5	UniRef90	UniRef90_UPI000E50043B	phage tail protein	NA
UHGV-0094573_5	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0094573_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-0094573_5	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0094573_6	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0094573_6	UniRef90	UniRef90_A0A373N7M8	PhageMin_Tail domain-containing protein	NA
UHGV-0094573_6	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0094573_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0094573_6	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0094573_6	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0094573_8	PHROG	phrog_88	major tail protein	tail
UHGV-0094573_8	UniRef90	UniRef90_D4M596	Phage major tail protein, phi13 family	NA
UHGV-0094573_8	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0094573_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0094573_8	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0094573_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0094573_9	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0094573_9	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0094573_9	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0094573_10	Structural annotation	PF05657	NA	NA
UHGV-0094573_11	UniRef90	UniRef90_D4M593	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0094573_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0094573_12	PHROG	phrog_749	NA	unknown function
UHGV-0094573_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0094573_13	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-0094573_13	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0094573_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0094573_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0094573_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0094573_13	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0094573_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0094573_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0094573_14	UniRef90	UniRef90_D4M590	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0094573_14	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0094573_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0094573_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0094573_14	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0094573_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0094573_15	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-0094573_15	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0094573_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0094573_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0094573_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0094573_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0094573_16	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0094573_16	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0094573_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0094573_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0094573_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0094573_16	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0094573_17	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0094573_17	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0094573_17	eggNOG-mapper	1211817.CCAT010000008_gene938	Phage terminase, small subunit	NA
UHGV-0094573_17	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0094573_17	COG	COG5484	NA	NA
UHGV-0094573_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0094573_18	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0094573_18	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0094573_18	UniRef90	UniRef90_UPI00156F1D4A	HNH endonuclease	NA
UHGV-0094573_18	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0094573_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0094573_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0094573_19	Structural annotation	PF14524, NF041178	NA	NA
UHGV-0094573_20	eggNOG-mapper	913865.DOT_2911	NA	NA
UHGV-0094573_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0094573_22	UniRef90	UniRef90_A0A373STV4	NA	NA
UHGV-0094573_22	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0094573_22	Pfam	PF07374	NA	DUF1492
UHGV-0094573_22	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0094573_22	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0094573_28	PHROG	phrog_7566	NA	unknown function
UHGV-0094573_28	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0094573_29	PHROG	phrog_15077	NA	unknown function
UHGV-0094573_29	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0094573_29	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0094573_29	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0094573_30	PHROG	phrog_8470	NA	unknown function
UHGV-0094573_30	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-0094573_30	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0094573_30	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0094573_30	Structural annotation	PF14284	NA	NA
UHGV-0094573_31	PHROG	phrog_4433	NA	unknown function
UHGV-0094573_31	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-0094573_32	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0094573_33	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0094573_33	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0094573_33	UniRef90	UniRef90_D4M578	Ribonuclease HI	NA
UHGV-0094573_33	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-0094573_33	Pfam	PF00075	RNase H	RNase_H
UHGV-0094573_33	COG	COG0328	Ribonuclease HI	NA
UHGV-0094573_33	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0094573_34	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0094573_34	eggNOG-mapper	665950.HMPREF1025_02552	NA	NA
UHGV-0094573_34	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0094573_40	PHROG	phrog_4392	NA	unknown function
UHGV-0094573_40	UniRef90	UniRef90_UPI000E489044	membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-0094573_42	Structural annotation	PF07378, MF_00783, COG5443	NA	NA
UHGV-0094573_45	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0094573_45	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0094573_45	UniRef90	UniRef90_A0A374EB41	XRE family transcriptional regulator	NA
UHGV-0094573_45	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0094573_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0094573_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0094573_45	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0094573_46	KOfam	K10716	kch, trkA, mthK, pch; voltage-gated potassium channel	NA
UHGV-0094573_46	PHROG	phrog_7872	NA	unknown function
UHGV-0094573_46	UniRef90	UniRef90_D4M567	Ion channel	NA
UHGV-0094573_46	eggNOG-mapper	411459.RUMOBE_00964	Ion channel	NA
UHGV-0094573_46	Pfam	PF07885	Ion channel	Ion_trans_2
UHGV-0094573_46	COG	COG1226	Voltage-gated potassium channel Kch	NA
UHGV-0094573_46	Structural annotation	PF07885, NF040645	NA	NA
UHGV-0094573_47	PHROG	phrog_10934	NA	unknown function
UHGV-0094573_47	eggNOG-mapper	742722.HMPREF9463_00385	NA	NA
UHGV-0094573_48	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0094573_48	PHROG	phrog_95	integrase	integration and excision
UHGV-0094573_48	UniRef90	UniRef90_A5KP69	Resolvase, N-terminal domain protein	NA
UHGV-0094573_48	eggNOG-mapper	411460.RUMTOR_02053	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0094573_48	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0094573_48	Pfam	PF07508	Recombinase	Recombinase
UHGV-0094573_48	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0094573_48	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0094573_48	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA