UHGV-0094629

Genome information

Genome length 29,220 bps

CDS count 47

Completeness 75.26% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0094629
vOTU ID	vOTU-018600
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_194728
BioSample	SAMEA3449426
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.07
Jumbo phage	No

Genome content
Genome length	29,220 bps
GC content	57.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.60%
Average CDS length	581.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0094629_1	PHROG	phrog_32744	NA	unknown function
UHGV-0094629_1	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0094629_1	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0094629_3	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0094629_3	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0094629_3	UniRef90	UniRef90_A0A6A8VHG4	Phage tail tape measure protein	NA
UHGV-0094629_3	eggNOG-mapper	316274.Haur_0549	TIGRFAM phage tail tape measure protein, TP901 family	NA
UHGV-0094629_3	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0094629_3	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0094629_3	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0094629_3	Structural annotation	PF10145, PF09486, PF05816, TIGR01760, TIGR03017, COG3853	NA	NA
UHGV-0094629_4	UniRef90	UniRef90_A0A6A8VI34	Zinc-ribbon domain-containing protein	NA
UHGV-0094629_4	eggNOG-mapper	742738.HMPREF9460_03900	zinc-ribbon domain	NA
UHGV-0094629_4	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0094629_6	eggNOG-mapper	1120978.KB894083_gene899	NA	NA
UHGV-0094629_6	Structural annotation	PF11836, TIGR01674	NA	NA
UHGV-0094629_7	PHROG	phrog_88	major tail protein	tail
UHGV-0094629_7	UniRef90	UniRef90_R5IDR6	Phage major tail protein phi13 family	NA
UHGV-0094629_7	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0094629_7	COG	COG5492	NA	NA
UHGV-0094629_7	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0094629_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0094629_8	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0094629_8	eggNOG-mapper	1089553.Tph_c23110	TIGRFAM phage protein, HK97 gp10 family	NA
UHGV-0094629_8	Structural annotation	TIGR01725	NA	NA
UHGV-0094629_9	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0094629_10	PHROG	phrog_19734	NA	unknown function
UHGV-0094629_10	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0094629_10	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0094629_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0094629_11	PHROG	phrog_749	NA	unknown function
UHGV-0094629_11	eggNOG-mapper	1347392.CCEZ01000045_gene14	NA	NA
UHGV-0094629_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0094629_12	UniRef90	UniRef90_A0A6A8VHN9	Phage major capsid protein	NA
UHGV-0094629_12	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0094629_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0094629_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0094629_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0094629_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0094629_13	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0094629_13	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0094629_13	UniRef90	UniRef90_A0A6A8VIT3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0094629_13	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0094629_13	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0094629_13	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0094629_13	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0094629_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0094629_14	UniRef90	UniRef90_A0A6A8VHH5	Phage portal protein	NA
UHGV-0094629_14	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0094629_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0094629_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0094629_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0094629_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0094629_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0094629_15	UniRef90	UniRef90_A0A6A8VI40	Terminase large subunit	NA
UHGV-0094629_15	eggNOG-mapper	349161.Dred_2607	Phage terminase-like protein large subunit	NA
UHGV-0094629_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0094629_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0094629_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0094629_15	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0094629_16	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0094629_16	UniRef90	UniRef90_A0A6A8VJ23	RNA polymerase subunit sigma-70	NA
UHGV-0094629_16	eggNOG-mapper	926561.KB900623_gene765	NA	NA
UHGV-0094629_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0094629_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0094629_17	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0094629_17	UniRef90	UniRef90_A0A6A8VJ97	HNH endonuclease	NA
UHGV-0094629_17	eggNOG-mapper	1415774.U728_1257	HNH nucleases	NA
UHGV-0094629_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0094629_20	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0094629_20	UniRef90	UniRef90_A0A6A8VHH8	Helix-turn-helix domain-containing protein	NA
UHGV-0094629_20	eggNOG-mapper	1415774.U728_2928	Helix-turn-helix XRE-family like proteins	NA
UHGV-0094629_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0094629_20	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0094629_21	eggNOG-mapper	693746.OBV_25230	NA	NA
UHGV-0094629_21	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0094629_22	Structural annotation	PF19070	NA	NA
UHGV-0094629_24	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0094629_25	UniRef90	UniRef90_UPI0018983B82	Lar family restriction alleviation protein	NA
UHGV-0094629_25	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0094629_30	eggNOG-mapper	1151126.AQYI01000003_gene730	NA	NA
UHGV-0094629_31	eggNOG-mapper	1280671.AUJH01000012_gene3173	NA	NA
UHGV-0094629_32	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0094629_32	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0094629_32	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0094629_32	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0094629_32	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0094629_32	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0094629_32	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0094629_32	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0094629_32	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0094629_34	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0094629_34	UniRef90	UniRef90_A0A6A8VJ62	NA	NA
UHGV-0094629_34	eggNOG-mapper	693746.OBV_25250	NA	NA
UHGV-0094629_34	Pfam	PF06356	NA	DUF1064
UHGV-0094629_34	Structural annotation	PF06356	NA	NA
UHGV-0094629_35	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0094629_35	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0094629_35	UniRef90	UniRef90_A0A6A8VIC3	IstB_IS21 domain-containing protein	NA
UHGV-0094629_35	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0094629_35	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0094629_35	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0094629_35	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0094629_36	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0094629_36	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0094629_36	Structural annotation	PF01978, NF000243, COG0735	NA	NA
UHGV-0094629_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0094629_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0094629_37	UniRef90	UniRef90_A0A6A8VIZ2	Single-stranded DNA-binding protein	NA
UHGV-0094629_37	eggNOG-mapper	411467.BACCAP_02389	Single-strand binding protein family	NA
UHGV-0094629_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0094629_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0094629_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0094629_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0094629_37	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0094629_38	PHROG	phrog_7566	NA	unknown function
UHGV-0094629_38	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0094629_39	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0094629_39	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0094629_39	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0094629_39	Structural annotation	PF05772	NA	NA
UHGV-0094629_40	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0094629_40	UniRef90	UniRef90_A0A1C6J8G0	ERF superfamily	NA
UHGV-0094629_40	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-0094629_40	Pfam	PF04404	ERF superfamily	ERF
UHGV-0094629_40	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0094629_43	Structural annotation	PF02002, MF_01804, NF040939, COG3355	NA	NA
UHGV-0094629_44	PHROG	phrog_19349	NA	unknown function
UHGV-0094629_44	UniRef90	UniRef90_A0A844KCK0	Transglycosylase SLT domain-containing protein	NA
UHGV-0094629_44	eggNOG-mapper	411468.CLOSCI_01470	Transglycosylase SLT domain	NA
UHGV-0094629_44	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0094629_44	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0094629_45	eggNOG-mapper	365044.Pnap_1043	NA	NA
UHGV-0094629_47	KOfam	K07486	K07486; transposase	NA
UHGV-0094629_47	PHROG	phrog_2199	transposase	integration and excision
UHGV-0094629_47	UniRef90	UniRef90_G9RQV5	DEDD_Tnp_IS110 domain-containing protein	NA
UHGV-0094629_47	eggNOG-mapper	658086.HMPREF0994_06606	Transposase IS116/IS110/IS902 family	NA
UHGV-0094629_47	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-0094629_47	COG	COG3547	Transposase	NA