UHGV-0094662

Genome information

vOTU vOTU-019315

Genome length 17,888 bps

CDS count 22

Completeness 50.04% (medium-quality)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-0094662
vOTU ID	vOTU-019315
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_179251
BioSample	SAMEA3449419
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.54
Jumbo phage	No

Genome content
Genome length	17,888 bps
GC content	29.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	22
CDS density	89.52%
Average CDS length	731.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0094662_3	Structural annotation	PF12651, COG4710	NA	NA
UHGV-0094662_6	PHROG	phrog_1066	NA	unknown function
UHGV-0094662_6	eggNOG-mapper	1196322.A370_05721	NA	NA
UHGV-0094662_6	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0094662_7	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0094662_7	UniRef90	UniRef90_A0A1B1YAC1	Terminase	NA
UHGV-0094662_7	eggNOG-mapper	1094508.Tsac_2427	Phage Terminase	NA
UHGV-0094662_7	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0094662_7	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0094662_7	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0094662_7	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0094662_8	PHROG	phrog_12	portal protein	head and packaging
UHGV-0094662_8	UniRef90	UniRef90_W9EA43	Phage portal protein, HK97 family	NA
UHGV-0094662_8	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-0094662_8	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0094662_8	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0094662_8	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0094662_9	KOfam	K06904	NA	NA
UHGV-0094662_9	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0094662_9	UniRef90	UniRef90_A0A2N2DQ29	HK97 family phage prohead protease	NA
UHGV-0094662_9	eggNOG-mapper	1278311.AUAL01000001_gene29	Phage prohead protease, HK97 family	NA
UHGV-0094662_9	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0094662_9	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0094662_9	COG	COG3740	Phage head maturation protease	NA
UHGV-0094662_9	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0094662_10	PHROG	phrog_10	major head protein	head and packaging
UHGV-0094662_10	UniRef90	UniRef90_UPI001EEEE1B8	phage major capsid protein	NA
UHGV-0094662_10	eggNOG-mapper	1094508.Tsac_2424	Phage capsid family	NA
UHGV-0094662_10	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0094662_10	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0094662_10	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0094662_10	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0094662_11	PHROG	phrog_5223	neck protein	connector
UHGV-0094662_11	UniRef90	UniRef90_A0A8J7KDM6	DNA-packaging protein	NA
UHGV-0094662_12	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0094662_12	eggNOG-mapper	396034.A6XMK0_9CAUD	NA	NA
UHGV-0094662_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0094662_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0094662_13	UniRef90	UniRef90_UPI001939C793	HK97 gp10 family phage protein	NA
UHGV-0094662_13	eggNOG-mapper	411468.CLOSCI_00545	COG NOG18351 non supervised orthologous group	NA
UHGV-0094662_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0094662_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0094662_14	eggNOG-mapper	1033744.CAEL01000029_gene1277	NA	NA
UHGV-0094662_14	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0094662_15	PHROG	phrog_88	major tail protein	tail
UHGV-0094662_15	UniRef90	UniRef90_A0A7G9W8B1	Phage tail protein	NA
UHGV-0094662_15	eggNOG-mapper	1120978.KB894081_gene115	phage tail protein	NA
UHGV-0094662_15	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-0094662_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0094662_15	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0094662_16	PHROG	phrog_709	NA	unknown function
UHGV-0094662_16	Structural annotation	PF11836	NA	NA
UHGV-0094662_17	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0094662_17	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0094662_17	UniRef90	UniRef90_A0A1F8UPJ4	Phage tail tape measure protein	NA
UHGV-0094662_17	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0094662_17	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0094662_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0094662_17	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0094662_18	Pfam	PF04355	SmpA / OmlA family	SmpA_OmlA
UHGV-0094662_22	PHROG	phrog_7064	tail protein	tail