UHGV-0094789

Genome information

Genome length 25,231 bps

CDS count 44

Completeness 59.67% (medium-quality)

geNomad score 0.9717

Prediction confidence Confident

Genome information
Genome ID	UHGV-0094789
vOTU ID	vOTU-034775
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_172891
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9717
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.97
Jumbo phage	No

Genome content
Genome length	25,231 bps
GC content	40.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	90.98%
Average CDS length	526.98 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0094789_2	Structural annotation	PF11836	NA	NA
UHGV-0094789_3	PHROG	phrog_88	major tail protein	tail
UHGV-0094789_3	UniRef90	UniRef90_A0A1C6IVD8	Phage major tail protein, phi13 family	NA
UHGV-0094789_3	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0094789_3	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0094789_3	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0094789_4	PHROG	phrog_78	tail terminator	connector
UHGV-0094789_4	UniRef90	UniRef90_A0A3D4X921	Phage tail protein	NA
UHGV-0094789_4	eggNOG-mapper	97139.C824_05966	NA	NA
UHGV-0094789_4	Structural annotation	PF05657	NA	NA
UHGV-0094789_5	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0094789_5	UniRef90	UniRef90_A0A1C6IVB7	Phage protein, HK97 gp10 family	NA
UHGV-0094789_5	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0094789_6	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0094789_6	UniRef90	UniRef90_A5ZPL6	Putative phage head-tail adaptor	NA
UHGV-0094789_6	eggNOG-mapper	1235792.C808_03061	NA	NA
UHGV-0094789_6	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0094789_7	PHROG	phrog_5223	neck protein	connector
UHGV-0094789_7	eggNOG-mapper	411459.RUMOBE_00934	NA	NA
UHGV-0094789_7	Structural annotation	TIGR01560	NA	NA
UHGV-0094789_8	PHROG	phrog_10	major head protein	head and packaging
UHGV-0094789_8	UniRef90	UniRef90_UPI001D08E8BE	phage major capsid protein	NA
UHGV-0094789_8	eggNOG-mapper	97139.C824_05970	Phage major capsid protein, HK97 family	NA
UHGV-0094789_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0094789_8	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0094789_8	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0094789_8	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0094789_9	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0094789_9	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0094789_9	UniRef90	UniRef90_A0A1C6IV57	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0094789_9	eggNOG-mapper	536233.CLO_1423	Belongs to the peptidase S14 family	NA
UHGV-0094789_9	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0094789_9	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0094789_9	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0094789_10	PHROG	phrog_12	portal protein	head and packaging
UHGV-0094789_10	UniRef90	UniRef90_A0A1C6IVH0	Phage portal protein, HK97 family	NA
UHGV-0094789_10	eggNOG-mapper	411459.RUMOBE_00937	NA	NA
UHGV-0094789_10	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0094789_10	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0094789_10	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0094789_10	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0094789_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0094789_11	UniRef90	UniRef90_A0A1C6IVJ8	Phage terminase-like protein, large subunit	NA
UHGV-0094789_11	eggNOG-mapper	411459.RUMOBE_00938	NA	NA
UHGV-0094789_11	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0094789_11	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0094789_11	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0094789_11	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0094789_12	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0094789_12	UniRef90	UniRef90_A0A1C6IV70	Phage terminase, small subunit	NA
UHGV-0094789_12	eggNOG-mapper	411459.RUMOBE_00939	Phage terminase, small subunit	NA
UHGV-0094789_12	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0094789_12	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0094789_12	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0094789_12	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0094789_13	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0094789_13	UniRef90	UniRef90_A0A1C6IUY5	HNH domain-containing protein	NA
UHGV-0094789_13	eggNOG-mapper	411459.RUMOBE_00940	HNH endonuclease	NA
UHGV-0094789_13	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0094789_13	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0094789_14	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0094789_14	UniRef90	UniRef90_A0A1C6IW44	RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1	NA
UHGV-0094789_14	eggNOG-mapper	1235792.C808_03069	sigma factor activity	NA
UHGV-0094789_14	Pfam	PF07374	NA	DUF1492
UHGV-0094789_14	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0094789_14	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0094789_15	PHROG	phrog_19011	NA	unknown function
UHGV-0094789_15	Structural annotation	PF17516, COG4466	NA	NA
UHGV-0094789_18	eggNOG-mapper	457412.RSAG_01159	NA	NA
UHGV-0094789_23	PHROG	phrog_7566	NA	unknown function
UHGV-0094789_23	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0094789_24	eggNOG-mapper	1235800.C819_00510	NA	NA
UHGV-0094789_25	PHROG	phrog_15077	NA	unknown function
UHGV-0094789_25	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0094789_25	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0094789_26	PHROG	phrog_8470	NA	unknown function
UHGV-0094789_26	UniRef90	UniRef90_UPI001158FAD9	PcfJ domain-containing protein	NA
UHGV-0094789_26	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0094789_26	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0094789_26	Structural annotation	PF14284	NA	NA
UHGV-0094789_27	PHROG	phrog_4433	NA	unknown function
UHGV-0094789_27	eggNOG-mapper	1256908.HMPREF0373_03002	NA	NA
UHGV-0094789_27	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0094789_28	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0094789_29	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0094789_29	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0094789_29	UniRef90	UniRef90_A0A417CPS0	RNase H type-1 domain-containing protein	NA
UHGV-0094789_29	eggNOG-mapper	411459.RUMOBE_00952	RNase H	NA
UHGV-0094789_29	Pfam	PF00075	RNase H	RNase_H
UHGV-0094789_29	COG	COG0328	Ribonuclease HI	NA
UHGV-0094789_29	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0094789_30	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0094789_30	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0094789_30	Structural annotation	PF01446	NA	NA
UHGV-0094789_33	PHROG	phrog_36464	NA	unknown function
UHGV-0094789_33	eggNOG-mapper	1235798.C817_05488	NA	NA
UHGV-0094789_33	Structural annotation	PF09035	NA	NA
UHGV-0094789_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0094789_39	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0094789_39	UniRef90	UniRef90_UPI00156EF7CE	helix-turn-helix domain-containing protein	NA
UHGV-0094789_39	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0094789_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0094789_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0094789_39	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0094789_41	UniRef90	UniRef90_A0A845KKN0	Helix-turn-helix domain-containing protein	NA
UHGV-0094789_41	eggNOG-mapper	411461.DORFOR_01128	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0094789_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0094789_43	KOfam	K14059	int; integrase	NA
UHGV-0094789_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0094789_43	UniRef90	UniRef90_A0A1C6K8Y0	Tyrosine recombinase XerD	NA
UHGV-0094789_43	eggNOG-mapper	33035.JPJF01000071_gene4457	Phage integrase family	NA
UHGV-0094789_43	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0094789_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0094789_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0094789_43	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA