UHGV-0095006

Genome information

Genome length 27,619 bps

CDS count 33

Completeness 71.12% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0095006
vOTU ID	vOTU-037666
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_224903
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.01
Jumbo phage	No

Genome content
Genome length	27,619 bps
GC content	43.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	88.32%
Average CDS length	741.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0095006_1	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0095006_1	UniRef90	UniRef90_UPI001C0F3787	helix-turn-helix domain-containing protein	NA
UHGV-0095006_1	eggNOG-mapper	1536772.R70723_06635	transposase activity	NA
UHGV-0095006_1	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0095006_1	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0095006_1	Structural annotation	PF07141	NA	NA
UHGV-0095006_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0095006_2	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0095006_2	UniRef90	UniRef90_A0A414SEW8	Terminase	NA
UHGV-0095006_2	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0095006_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0095006_2	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0095006_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-0095006_3	UniRef90	UniRef90_A0A6L8XU40	Capsid protein	NA
UHGV-0095006_3	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0095006_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0095006_4	PHROG	phrog_25639	NA	unknown function
UHGV-0095006_4	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0095006_5	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0095006_5	UniRef90	UniRef90_A0A416Q253	Minor capsid protein	NA
UHGV-0095006_5	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0095006_5	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0095006_5	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0095006_5	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0095006_5	Structural annotation	PF06152	NA	NA
UHGV-0095006_7	PHROG	phrog_3675	NA	unknown function
UHGV-0095006_7	UniRef90	UniRef90_A0A174B2I0	YjcQ protein	NA
UHGV-0095006_7	eggNOG-mapper	585501.HMPREF6123_0838	YjcQ protein	NA
UHGV-0095006_7	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0095006_7	Structural annotation	PF09639, TIGR04176	NA	NA
UHGV-0095006_8	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0095006_8	UniRef90	UniRef90_UPI000CFA6BAA	NA	NA
UHGV-0095006_8	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0095006_8	Pfam	PF14359	NA	DUF4406
UHGV-0095006_8	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0095006_10	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0095006_10	eggNOG-mapper	1298920.KI911353_gene4851	NA	NA
UHGV-0095006_11	PHROG	phrog_422	major head protein	head and packaging
UHGV-0095006_11	UniRef90	UniRef90_A0A414EG86	Phage capsid protein	NA
UHGV-0095006_11	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0095006_11	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0095006_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0095006_12	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0095006_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0095006_13	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0095006_14	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0095006_14	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-0095006_14	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-0095006_14	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0095006_14	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0095006_15	PHROG	phrog_820	major tail protein	tail
UHGV-0095006_15	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0095006_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0095006_16	PHROG	phrog_8300	NA	unknown function
UHGV-0095006_16	eggNOG-mapper	1282664.H354_06701	NA	NA
UHGV-0095006_16	Structural annotation	PF06854	NA	NA
UHGV-0095006_17	PHROG	phrog_8355	NA	unknown function
UHGV-0095006_17	UniRef90	UniRef90_UPI001C10E2B7	Gp15 family bacteriophage protein	NA
UHGV-0095006_17	eggNOG-mapper	483218.BACPEC_01147	Bacteriophage Gp15 protein	NA
UHGV-0095006_18	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0095006_18	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0095006_18	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0095006_18	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0095006_18	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0095006_19	PHROG	phrog_1194	NA	unknown function
UHGV-0095006_19	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0095006_19	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0095006_20	PHROG	phrog_6616	tail protein	tail
UHGV-0095006_20	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-0095006_20	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0095006_20	COG	COG4926	Phage-related protein	NA
UHGV-0095006_20	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0095006_21	PHROG	phrog_11037	NA	unknown function
UHGV-0095006_21	UniRef90	UniRef90_A0A174B682	NlpC/P60 family	NA
UHGV-0095006_21	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0095006_21	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0095006_21	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0095006_21	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0095006_21	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0095006_22	PHROG	phrog_24267	NA	unknown function
UHGV-0095006_22	UniRef90	UniRef90_A0A174B5G0	Phage-related holin (Lysis protein)	NA
UHGV-0095006_22	eggNOG-mapper	33035.JPJF01000023_gene3223	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0095006_22	COG	COG4675	Phage tail collar domain	NA
UHGV-0095006_23	PHROG	phrog_19695	NA	unknown function
UHGV-0095006_23	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-0095006_23	Structural annotation	PF19714	NA	NA
UHGV-0095006_24	PHROG	phrog_2234	tail spike protein	tail
UHGV-0095006_24	UniRef90	UniRef90_UPI00069747E2	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0095006_24	eggNOG-mapper	1169144.KB910980_gene1544	Right handed beta helix region	NA
UHGV-0095006_24	COG	COG5434	Polygalacturonase	NA
UHGV-0095006_25	PHROG	phrog_28526	NA	unknown function
UHGV-0095006_25	UniRef90	UniRef90_UPI00156FE2AD	NA	NA
UHGV-0095006_25	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-0095006_25	Pfam	PF04255	NA	DUF433
UHGV-0095006_26	PHROG	phrog_20441	NA	unknown function
UHGV-0095006_26	UniRef90	UniRef90_UPI0013BD9B76	NA	NA
UHGV-0095006_27	PHROG	phrog_1863	NA	unknown function
UHGV-0095006_27	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0095006_27	eggNOG-mapper	556261.HMPREF0240_01265	NA	NA
UHGV-0095006_28	PHROG	phrog_1129	holin	lysis
UHGV-0095006_28	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0095006_28	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-0095006_28	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0095006_28	Structural annotation	PF16079	NA	NA
UHGV-0095006_29	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0095006_29	PHROG	phrog_3088	amidase	lysis
UHGV-0095006_29	UniRef90	UniRef90_UPI001C025321	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0095006_29	eggNOG-mapper	478749.BRYFOR_07564	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0095006_29	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0095006_29	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0095006_29	COG	COG3087	Cell division protein FtsN	NA
UHGV-0095006_29	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG5632	NA	NA
UHGV-0095006_30	KOfam	K14059	int; integrase	NA
UHGV-0095006_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0095006_30	UniRef90	UniRef90_A0A174AZK7	Site-specific tyrosine recombinase XerC	NA
UHGV-0095006_30	eggNOG-mapper	411902.CLOBOL_02558	Belongs to the 'phage' integrase family	NA
UHGV-0095006_30	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0095006_30	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0095006_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0095006_30	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0095006_30	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0095006_31	UniRef90	UniRef90_A0A8D9UIV6	RNAse domain protein	NA
UHGV-0095006_31	Structural annotation	PF02701	NA	NA