UHGV-0095061

Genome information

Genome length 25,115 bps

CDS count 38

Completeness 58.63% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0095061
vOTU ID	vOTU-026566
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_213398
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.26
Jumbo phage	No

Genome content
Genome length	25,115 bps
GC content	49.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	91.31%
Average CDS length	605.05 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0095061_2	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0095061_2	UniRef90	UniRef90_A0A810QB82	NA	NA
UHGV-0095061_2	eggNOG-mapper	551790.B5BTW0_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0095061_2	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0095061_2	Structural annotation	PF18909	NA	NA
UHGV-0095061_3	PHROG	phrog_8684	NA	unknown function
UHGV-0095061_3	UniRef90	UniRef90_A0A1C5WBP0	YopX protein	NA
UHGV-0095061_3	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-0095061_3	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0095061_6	PHROG	phrog_2717	NA	unknown function
UHGV-0095061_6	eggNOG-mapper	552398.HMPREF0866_02231	NA	NA
UHGV-0095061_7	UniRef90	UniRef90_A0A8J6J3G6	Helix-turn-helix transcriptional regulator	NA
UHGV-0095061_7	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0095061_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0095061_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0095061_9	PHROG	phrog_2412	NA	unknown function
UHGV-0095061_9	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0095061_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0095061_10	PHROG	phrog_29775	NA	unknown function
UHGV-0095061_10	UniRef90	UniRef90_A0A1C6B5W6	Phage terminase, large subunit, PBSX family	NA
UHGV-0095061_10	eggNOG-mapper	428125.CLOLEP_01804	Phage terminase, large subunit, PBSX family	NA
UHGV-0095061_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0095061_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-0095061_10	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0095061_11	PHROG	phrog_533	portal protein	head and packaging
UHGV-0095061_11	UniRef90	UniRef90_A0A136WBU7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0095061_11	eggNOG-mapper	397291.C804_01614	phage minor capsid protein	NA
UHGV-0095061_11	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0095061_12	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0095061_12	UniRef90	UniRef90_A0A1C6B625	Phage minor capsid protein 2	NA
UHGV-0095061_12	eggNOG-mapper	1151292.QEW_4539	NA	NA
UHGV-0095061_12	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0095061_12	COG	COG2369	NA	NA
UHGV-0095061_12	Structural annotation	PF06152	NA	NA
UHGV-0095061_13	PHROG	phrog_1233	NA	unknown function
UHGV-0095061_13	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0095061_15	UniRef90	UniRef90_A0A1C6B5I1	Phage minor structural protein GP20	NA
UHGV-0095061_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0095061_15	Structural annotation	PF06810	NA	NA
UHGV-0095061_16	PHROG	phrog_544	major head protein	head and packaging
UHGV-0095061_16	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0095061_16	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0095061_16	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0095061_16	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0095061_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0095061_17	UniRef90	UniRef90_A0A345MKD1	Putative head-tail connector protein	NA
UHGV-0095061_18	PHROG	phrog_3366	NA	unknown function
UHGV-0095061_18	Pfam	PF20536	NA	DUF6751
UHGV-0095061_18	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0095061_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0095061_19	UniRef90	UniRef90_UPI001C3B04D8	Minor capsid protein	NA
UHGV-0095061_19	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0095061_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0095061_19	Structural annotation	PF11114	NA	NA
UHGV-0095061_20	PHROG	phrog_3266	tail completion	connector
UHGV-0095061_20	Structural annotation	PF12691	NA	NA
UHGV-0095061_21	PHROG	phrog_820	major tail protein	tail
UHGV-0095061_21	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0095061_21	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0095061_21	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0095061_22	Structural annotation	PF20378	NA	NA
UHGV-0095061_23	PHROG	phrog_706	NA	unknown function
UHGV-0095061_23	UniRef90	UniRef90_A0A1C6B556	Bacteriophage Gp15 protein	NA
UHGV-0095061_23	eggNOG-mapper	573061.Clocel_0219	Bacteriophage Gp15 protein	NA
UHGV-0095061_23	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0095061_23	Structural annotation	PF06854	NA	NA
UHGV-0095061_24	PHROG	phrog_23464	NA	unknown function
UHGV-0095061_24	UniRef90	UniRef90_A0A1C6B4Q1	Phage-related protein	NA
UHGV-0095061_24	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0095061_24	COG	COG5283	Phage-related tail protein	NA
UHGV-0095061_24	Structural annotation	PF20155	NA	NA
UHGV-0095061_25	eggNOG-mapper	1120998.AUFC01000030_gene2246	NA	NA
UHGV-0095061_25	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0095061_26	PHROG	phrog_32744	NA	unknown function
UHGV-0095061_26	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0095061_26	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0095061_28	eggNOG-mapper	1203606.HMPREF1526_02029	Collagen triple helix repeat (20 copies)	NA
UHGV-0095061_28	COG	COG1409	3',5'-cyclic AMP phosphodiesterase CpdA	NA
UHGV-0095061_29	eggNOG-mapper	742733.HMPREF9469_01803	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0095061_29	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0095061_31	Structural annotation	NF012201	NA	NA
UHGV-0095061_34	eggNOG-mapper	445972.ANACOL_03381	NA	NA
UHGV-0095061_36	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0095061_36	PHROG	phrog_670	endolysin	lysis
UHGV-0095061_36	UniRef90	UniRef90_U2SBT6	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0095061_36	eggNOG-mapper	1226322.HMPREF1545_00070	Ami_2	NA
UHGV-0095061_36	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0095061_36	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0095061_36	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0095061_37	UniRef90	UniRef90_U2R3E6	KORA domain-containing protein	NA
UHGV-0095061_37	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA