UHGV-0095107

Genome information

Genome length 19,706 bps

CDS count 36

Completeness 51.30% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0095107
vOTU ID	vOTU-042146
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_202542
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.45
Jumbo phage	No

Genome content
Genome length	19,706 bps
GC content	43.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	90.11%
Average CDS length	497.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0095107_1	PHROG	phrog_10	major head protein	head and packaging
UHGV-0095107_1	UniRef90	UniRef90_UPI0015708646	phage major capsid protein	NA
UHGV-0095107_1	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0095107_1	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0095107_1	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0095107_1	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0095107_1	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0095107_2	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0095107_2	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0095107_2	UniRef90	UniRef90_A0A417PG92	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0095107_2	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0095107_2	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0095107_2	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0095107_2	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0095107_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0095107_3	UniRef90	UniRef90_A0A417PG64	Phage portal protein	NA
UHGV-0095107_3	eggNOG-mapper	1235792.C808_00084	Phage portal protein, HK97 family	NA
UHGV-0095107_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0095107_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0095107_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0095107_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0095107_4	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0095107_4	UniRef90	UniRef90_A0A417PG72	Terminase large subunit	NA
UHGV-0095107_4	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0095107_4	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0095107_4	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0095107_4	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0095107_4	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0095107_5	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0095107_5	UniRef90	UniRef90_A0A1M6MVK9	Phage terminase, small subunit	NA
UHGV-0095107_5	eggNOG-mapper	1235792.C808_00082	NA	NA
UHGV-0095107_5	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0095107_5	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0095107_6	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0095107_6	UniRef90	UniRef90_A0A417PG49	NA	NA
UHGV-0095107_6	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0095107_6	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0095107_6	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0095107_8	PHROG	phrog_11237	NA	unknown function
UHGV-0095107_8	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-0095107_9	PHROG	phrog_6072	NA	unknown function
UHGV-0095107_10	PHROG	phrog_7566	NA	unknown function
UHGV-0095107_10	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0095107_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0095107_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0095107_12	UniRef90	UniRef90_A0A417PG59	Single-stranded DNA-binding protein	NA
UHGV-0095107_12	eggNOG-mapper	457412.RSAG_03244	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0095107_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0095107_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0095107_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0095107_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0095107_12	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0095107_14	PHROG	phrog_3502	NA	unknown function
UHGV-0095107_14	UniRef90	UniRef90_A0A417ANR7	LexA_DNA_bind domain-containing protein	NA
UHGV-0095107_14	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0095107_14	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0095107_14	Structural annotation	PF01726, MF_00732, TIGR00738, COG3388	NA	NA
UHGV-0095107_18	UniRef90	UniRef90_A0A1Q6JLU8	PH domain-containing protein	NA
UHGV-0095107_18	eggNOG-mapper	411470.RUMGNA_00212	NA	NA
UHGV-0095107_20	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0095107_20	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0095107_20	UniRef90	UniRef90_A0A417ANM7	ParB domain-containing protein	NA
UHGV-0095107_20	eggNOG-mapper	1235792.C808_00610	ParB-like nuclease domain	NA
UHGV-0095107_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0095107_20	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0095107_20	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0095107_21	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0095107_21	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0095107_21	UniRef90	UniRef90_A0A417PG63	ParA family protein	NA
UHGV-0095107_21	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-0095107_21	Pfam	PF13614	AAA domain	AAA_31
UHGV-0095107_21	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0095107_21	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0095107_23	UniRef90	UniRef90_A0A1C6IUE3	Ribonuclease H	NA
UHGV-0095107_23	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0095107_23	COG	COG0328	Ribonuclease HI	NA
UHGV-0095107_23	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0095107_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0095107_24	eggNOG-mapper	1235792.C808_03084	NA	NA
UHGV-0095107_24	Structural annotation	PF01446	NA	NA
UHGV-0095107_27	eggNOG-mapper	1235792.C808_00637	NA	NA
UHGV-0095107_31	PHROG	phrog_4068	NA	unknown function
UHGV-0095107_31	Structural annotation	PF06657	NA	NA
UHGV-0095107_33	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0095107_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0095107_33	UniRef90	UniRef90_A0A412EM95	XRE family transcriptional regulator	NA
UHGV-0095107_33	eggNOG-mapper	411470.RUMGNA_00191	DNA-binding helix-turn-helix protein	NA
UHGV-0095107_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0095107_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0095107_33	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0095107_34	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0095107_34	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0095107_34	UniRef90	UniRef90_A0A412ELZ3	XRE family transcriptional regulator	NA
UHGV-0095107_34	eggNOG-mapper	411470.RUMGNA_00189	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0095107_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0095107_34	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0095107_35	eggNOG-mapper	1235800.C819_02268	NA	NA
UHGV-0095107_36	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0095107_36	PHROG	phrog_95	integrase	integration and excision
UHGV-0095107_36	UniRef90	UniRef90_A0A417ANQ9	Recombinase family protein	NA
UHGV-0095107_36	eggNOG-mapper	1123075.AUDP01000026_gene425	Resolvase, N terminal domain	NA
UHGV-0095107_36	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0095107_36	Pfam	PF07508	Recombinase	Recombinase
UHGV-0095107_36	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0095107_36	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0095107_36	Structural annotation	PF00239, NF041201, COG1961	NA	NA