UHGV-0095237

Genome information

Genome length 32,485 bps

CDS count 41

Completeness 80.45% (medium-quality)

geNomad score 0.9758

Prediction confidence Confident

Genome information
Genome ID	UHGV-0095237
vOTU ID	vOTU-038481
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_219863
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9758
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.96
Jumbo phage	No

Genome content
Genome length	32,485 bps
GC content	39.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	92.43%
Average CDS length	738.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0095237_1	UniRef90	UniRef90_A0A1Y4Q2I4	Arm-DNA-bind_5 domain-containing protein	NA
UHGV-0095237_1	Structural annotation	PF17145, TIGR03352	NA	NA
UHGV-0095237_2	UniRef90	UniRef90_A0A5D8YP02	Heavy metal-binding domain-containing protein	NA
UHGV-0095237_2	Structural annotation	PF11524, MF_00976, TIGR03884, COG0393	NA	NA
UHGV-0095237_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0095237_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0095237_3	UniRef90	UniRef90_UPI0009080211	helix-turn-helix transcriptional regulator	NA
UHGV-0095237_3	eggNOG-mapper	762984.HMPREF9445_00136	Transcriptional regulator	NA
UHGV-0095237_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0095237_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0095237_3	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0095237_7	Structural annotation	PF01475, MF_01909, NF041413, COG5045	NA	NA
UHGV-0095237_8	PHROG	phrog_18744	NA	unknown function
UHGV-0095237_8	eggNOG-mapper	1121101.HMPREF1532_02568	NA	NA
UHGV-0095237_9	eggNOG-mapper	272559.BF9343_2321	NA	NA
UHGV-0095237_11	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0095237_11	UniRef90	UniRef90_A0A3E5G704	Recombinase	NA
UHGV-0095237_11	eggNOG-mapper	1268240.ATFI01000007_gene442	Bacteriophage Lambda NinG protein	NA
UHGV-0095237_11	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0095237_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0095237_11	Structural annotation	PF05766	NA	NA
UHGV-0095237_12	PHROG	phrog_10608	NA	unknown function
UHGV-0095237_12	eggNOG-mapper	272559.BF9343_2324	NA	NA
UHGV-0095237_14	PHROG	phrog_19415	NA	unknown function
UHGV-0095237_14	UniRef90	UniRef90_E5CG75	NA	NA
UHGV-0095237_14	eggNOG-mapper	1123058.KB894219_gene165	COG NOG19076 non supervised orthologous group	NA
UHGV-0095237_14	Pfam	PF19808	NA	DUF6291
UHGV-0095237_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0095237_14	Structural annotation	PF19808	NA	NA
UHGV-0095237_15	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0095237_15	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0095237_15	UniRef90	UniRef90_E5CG76	DNA helicase	NA
UHGV-0095237_15	eggNOG-mapper	742766.HMPREF9455_01845	Participates in initiation and elongation during chromosome replication	NA
UHGV-0095237_15	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0095237_15	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0095237_15	COG	COG0305	Replicative DNA helicase	NA
UHGV-0095237_15	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0095237_16	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0095237_16	UniRef90	UniRef90_A0A412C6J5	NA	NA
UHGV-0095237_16	eggNOG-mapper	411477.PARMER_03311	NA	NA
UHGV-0095237_16	Pfam	PF11325	NA	DUF3127
UHGV-0095237_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0095237_16	Structural annotation	PF11325, MF_00720, NF004476, COG2965	NA	NA
UHGV-0095237_17	eggNOG-mapper	1347393.HG726022_gene3594	NA	NA
UHGV-0095237_18	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0095237_18	UniRef90	UniRef90_A0A1M5F6L6	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0095237_18	eggNOG-mapper	1347393.HG726021_gene401	NA	NA
UHGV-0095237_18	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0095237_18	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0095237_19	PHROG	phrog_9236	pyrophosphatase	other
UHGV-0095237_19	eggNOG-mapper	411901.BACCAC_01178	NA	NA
UHGV-0095237_19	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0095237_20	PHROG	phrog_1	integrase	integration and excision
UHGV-0095237_20	UniRef90	UniRef90_A0A1C6FYI6	Site-specific recombinase XerD	NA
UHGV-0095237_20	eggNOG-mapper	1236514.BAKL01000008_gene916	Phage integrase family	NA
UHGV-0095237_20	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0095237_21	UniRef90	UniRef90_A0A496C6J9	Ribbon-helix-helix domain-containing protein	NA
UHGV-0095237_21	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0095237_23	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0095237_23	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0095237_23	UniRef90	UniRef90_E5CG94	HNH domain-containing protein	NA
UHGV-0095237_23	eggNOG-mapper	1268240.ATFI01000007_gene425	HNH endonuclease	NA
UHGV-0095237_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0095237_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0095237_24	UniRef90	UniRef90_UPI001C8C6915	NA	NA
UHGV-0095237_24	eggNOG-mapper	1268240.ATFI01000008_gene2008	NA	NA
UHGV-0095237_24	Pfam	PF16476	NA	DUF5053
UHGV-0095237_24	Structural annotation	PF16476	NA	NA
UHGV-0095237_25	UniRef90	UniRef90_A0A139JU77	Acyltransferase	NA
UHGV-0095237_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0095237_26	UniRef90	UniRef90_E5CG97	p27 family putative phage terminase, small subunit	NA
UHGV-0095237_26	eggNOG-mapper	1268240.ATFI01000007_gene422	Phage terminase, small subunit	NA
UHGV-0095237_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0095237_26	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0095237_26	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0095237_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0095237_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0095237_27	UniRef90	UniRef90_A0A3E5G6E2	Terminase large subunit	NA
UHGV-0095237_27	eggNOG-mapper	1268240.ATFI01000007_gene421	Phage Terminase	NA
UHGV-0095237_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0095237_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0095237_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0095237_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0095237_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0095237_28	UniRef90	UniRef90_A0A1G6G5W6	Phage portal protein, HK97 family	NA
UHGV-0095237_28	eggNOG-mapper	1268240.ATFI01000007_gene420	Phage portal protein	NA
UHGV-0095237_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0095237_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0095237_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0095237_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0095237_29	KOfam	K06904	NA	NA
UHGV-0095237_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0095237_29	UniRef90	UniRef90_E5CGA0	HK97 family phage prohead protease	NA
UHGV-0095237_29	eggNOG-mapper	1268240.ATFI01000007_gene419	Caudovirus prohead serine protease	NA
UHGV-0095237_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0095237_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0095237_29	COG	COG3740	Phage head maturation protease	NA
UHGV-0095237_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0095237_30	PHROG	phrog_617	major head protein	head and packaging
UHGV-0095237_30	UniRef90	UniRef90_UPI001CCE278B	phage major capsid protein	NA
UHGV-0095237_30	eggNOG-mapper	1268240.ATFI01000007_gene418	Phage capsid family	NA
UHGV-0095237_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0095237_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0095237_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0095237_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0095237_31	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0095237_31	UniRef90	UniRef90_UPI001CCFABBE	head-tail connector protein	NA
UHGV-0095237_31	eggNOG-mapper	1268240.ATFI01000007_gene417	Phage gp6-like head-tail connector protein	NA
UHGV-0095237_31	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0095237_31	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0095237_31	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0095237_32	PHROG	phrog_25	head closure Hc1	connector
UHGV-0095237_32	UniRef90	UniRef90_A0A1G6G5N4	Phage head-tail joining protein	NA
UHGV-0095237_32	eggNOG-mapper	1347393.HG726026_gene2616	Phage head-tail joining protein	NA
UHGV-0095237_32	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0095237_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0095237_33	UniRef90	UniRef90_E2N7Z2	Putative phage protein, HK97 gp10 family	NA
UHGV-0095237_33	eggNOG-mapper	1268240.ATFI01000007_gene415	NA	NA
UHGV-0095237_33	Structural annotation	TIGR01725	NA	NA
UHGV-0095237_34	UniRef90	UniRef90_UPI001CCBF085	NA	NA
UHGV-0095237_34	eggNOG-mapper	1347393.HG726026_gene2618	NA	NA
UHGV-0095237_34	Structural annotation	PF11367, COG5003	NA	NA
UHGV-0095237_35	PHROG	phrog_1407	major tail protein	tail
UHGV-0095237_35	UniRef90	UniRef90_A0A449I4M1	Phage major tail protein 2	NA
UHGV-0095237_35	eggNOG-mapper	1347393.HG726026_gene2619	Phage tail tube protein	NA
UHGV-0095237_35	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0095237_35	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0095237_36	eggNOG-mapper	1268240.ATFI01000007_gene412	NA	NA
UHGV-0095237_37	PHROG	phrog_2335	tail length tape measure protein	tail
UHGV-0095237_37	UniRef90	UniRef90_A0A1G6G5E1	Tape measure domain-containing protein	NA
UHGV-0095237_37	eggNOG-mapper	1268240.ATFI01000007_gene411	tape measure	NA
UHGV-0095237_37	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0095237_37	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0095237_37	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0095237_37	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0095237_38	PHROG	phrog_30639	NA	unknown function
UHGV-0095237_38	eggNOG-mapper	1268240.ATFI01000007_gene410	NA	NA
UHGV-0095237_38	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0095237_39	PHROG	phrog_38044	NA	unknown function
UHGV-0095237_39	eggNOG-mapper	657309.BXY_05160	NA	NA
UHGV-0095237_40	eggNOG-mapper	657309.BXY_05150	NA	NA
UHGV-0095237_41	PHROG	phrog_24896	NA	unknown function
UHGV-0095237_41	UniRef90	UniRef90_UPI000E502684	leucine-rich repeat protein	NA
UHGV-0095237_41	eggNOG-mapper	762968.HMPREF9441_03606	NA	NA
UHGV-0095237_41	Structural annotation	PF08757, PF07953, PF16397, PF17790, MF_04116, TIGR04216, COG3291	NA	NA