UHGV-0095239

Genome information

Genome length 42,404 bps

CDS count 55

Completeness 91.29% (high-quality)

geNomad score 0.9716

Prediction confidence Confident

Genome information
Genome ID	UHGV-0095239
vOTU ID	vOTU-074658
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_219860
BioSample	SAMEA3541534
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.29% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9716
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.44
Jumbo phage	No

Genome content
Genome length	42,404 bps
GC content	53.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	90.22%
Average CDS length	698.07 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0095239_4	Structural annotation	PF02185	NA	NA
UHGV-0095239_6	eggNOG-mapper	449673.BACSTE_00852	NA	NA
UHGV-0095239_7	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0095239_7	PHROG	phrog_894	endolysin	lysis
UHGV-0095239_7	UniRef90	UniRef90_A0A143XLQ9	Peptidase M15	NA
UHGV-0095239_7	eggNOG-mapper	547042.BACCOPRO_00949	Peptidase M15	NA
UHGV-0095239_7	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0095239_7	COG	COG3108	NA	NA
UHGV-0095239_7	Structural annotation	PF08291, COG3108	NA	NA
UHGV-0095239_8	Structural annotation	PF20647	NA	NA
UHGV-0095239_9	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0095239_9	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0095239_9	UniRef90	UniRef90_UPI00050A2096	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0095239_9	eggNOG-mapper	575590.HMPREF0156_00159	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0095239_9	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0095239_9	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0095239_10	UniRef90	UniRef90_UPI00050A273C	helix-turn-helix transcriptional regulator	NA
UHGV-0095239_10	eggNOG-mapper	1121887.AUDK01000033_gene1451	PFAM Uncharacterised protein family UPF0150	NA
UHGV-0095239_10	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0095239_10	Structural annotation	PF21748, NF041951, COG1598	NA	NA
UHGV-0095239_11	KOfam	K14059	int; integrase	NA
UHGV-0095239_11	PHROG	phrog_1	integrase	integration and excision
UHGV-0095239_11	UniRef90	UniRef90_UPI0006919286	site-specific integrase	NA
UHGV-0095239_11	eggNOG-mapper	1121100.JCM6294_508	Phage integrase SAM-like domain	NA
UHGV-0095239_11	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0095239_11	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0095239_11	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0095239_11	Structural annotation	PF17293, PF13102, PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0095239_12	eggNOG-mapper	435591.BDI_3751	NA	NA
UHGV-0095239_13	Structural annotation	PF14504	NA	NA
UHGV-0095239_14	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0095239_14	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0095239_14	UniRef90	UniRef90_UPI0009DEAF49	helix-turn-helix domain-containing protein	NA
UHGV-0095239_14	eggNOG-mapper	1235788.C802_00043	Helix-turn-helix XRE-family like proteins	NA
UHGV-0095239_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0095239_14	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0095239_14	Structural annotation	PF00717, PF13560, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0095239_17	Structural annotation	PF14084	NA	NA
UHGV-0095239_20	PHROG	phrog_14584	NA	unknown function
UHGV-0095239_20	eggNOG-mapper	1268240.ATFI01000008_gene2554	NA	NA
UHGV-0095239_21	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0095239_21	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0095239_21	UniRef90	UniRef90_UPI0018A94F46	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0095239_21	eggNOG-mapper	1268240.ATFI01000008_gene2555	NA	NA
UHGV-0095239_21	Pfam	PF12684	NA	DUF3799
UHGV-0095239_21	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-0095239_22	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0095239_22	UniRef90	UniRef90_UPI0018AC7931	recombination protein NinG	NA
UHGV-0095239_22	eggNOG-mapper	1203632.HMPREF1300_00442	HNH endonuclease	NA
UHGV-0095239_22	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0095239_22	COG	COG3513	CRISPR-Cas system type-II protein Cas9	NA
UHGV-0095239_22	Structural annotation	PF05766	NA	NA
UHGV-0095239_23	PHROG	phrog_26490	NA	unknown function
UHGV-0095239_23	eggNOG-mapper	1268240.ATFI01000008_gene2557	NA	NA
UHGV-0095239_24	PHROG	phrog_16304	NA	unknown function
UHGV-0095239_24	UniRef90	UniRef90_UPI001898327E	NA	NA
UHGV-0095239_24	eggNOG-mapper	694427.Palpr_2953	NA	NA
UHGV-0095239_24	Pfam	PF19808	NA	DUF6291
UHGV-0095239_25	PHROG	phrog_15937	NA	unknown function
UHGV-0095239_25	eggNOG-mapper	742727.HMPREF9447_04879	NA	NA
UHGV-0095239_26	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0095239_26	UniRef90	UniRef90_UPI00164C574E	DNA adenine methylase	NA
UHGV-0095239_26	eggNOG-mapper	1236504.HMPREF2132_01695	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0095239_26	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0095239_26	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0095239_26	Structural annotation	PF02086, NF008152, COG0338	NA	NA
UHGV-0095239_29	Structural annotation	PF07603, TIGR02145	NA	NA
UHGV-0095239_32	PHROG	phrog_10841	NA	unknown function
UHGV-0095239_32	Structural annotation	PF18350	NA	NA
UHGV-0095239_34	PHROG	phrog_8684	NA	unknown function
UHGV-0095239_34	UniRef90	UniRef90_UPI000A5AC279	YopX family protein	NA
UHGV-0095239_34	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0095239_34	Pfam	PF09643	YopX protein	YopX
UHGV-0095239_34	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0095239_34	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0095239_35	PHROG	phrog_874	NA	unknown function
UHGV-0095239_35	eggNOG-mapper	563008.HMPREF0665_02420	NA	NA
UHGV-0095239_35	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0095239_37	UniRef90	UniRef90_UPI001297AEBA	MmcB family DNA repair protein	NA
UHGV-0095239_37	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0095239_40	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0095239_40	UniRef90	UniRef90_A0A191ZDI3	Putative terminase small subunit	NA
UHGV-0095239_40	eggNOG-mapper	931276.Cspa_c57180	DNA-packaging protein gp3	NA
UHGV-0095239_40	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0095239_40	Structural annotation	PF16677	NA	NA
UHGV-0095239_41	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0095239_41	UniRef90	UniRef90_UPI001C3B1480	Phage terminase large subunit	NA
UHGV-0095239_41	eggNOG-mapper	445970.ALIPUT_00048	domain protein	NA
UHGV-0095239_41	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0095239_41	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0095239_41	COG	COG5410	NA	NA
UHGV-0095239_41	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0095239_42	PHROG	phrog_8193	major head protein	head and packaging
UHGV-0095239_42	UniRef90	UniRef90_I6S2L8	Putative tail protein	NA
UHGV-0095239_42	eggNOG-mapper	1176422.I6S2L8_9CAUD	NA	NA
UHGV-0095239_42	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0095239_43	PHROG	phrog_7376	portal protein	head and packaging
UHGV-0095239_43	eggNOG-mapper	1121101.HMPREF1532_02599	NA	NA
UHGV-0095239_44	PHROG	phrog_7376	portal protein	head and packaging
UHGV-0095239_44	UniRef90	UniRef90_A0A7U3MXY7	Portal protein	NA
UHGV-0095239_44	eggNOG-mapper	1121101.HMPREF1532_02599	NA	NA
UHGV-0095239_44	Structural annotation	PF05133, MF_04120, TIGR01542	NA	NA
UHGV-0095239_46	PHROG	phrog_7970	virion structural protein	head and packaging
UHGV-0095239_46	UniRef90	UniRef90_A0A7U3MYE1	Putative capsid associated protein	NA
UHGV-0095239_46	eggNOG-mapper	1176422.I6S6X7_9CAUD	NA	NA
UHGV-0095239_46	Structural annotation	PF21662	NA	NA
UHGV-0095239_47	PHROG	phrog_7231	virion structural protein	head and packaging
UHGV-0095239_47	UniRef90	UniRef90_B5TRC7	MP1	NA
UHGV-0095239_47	eggNOG-mapper	99179.B5TRC7_9CAUD	NA	NA
UHGV-0095239_47	Structural annotation	PF05065, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0095239_48	PHROG	phrog_8189	NA	unknown function
UHGV-0095239_48	eggNOG-mapper	1105171.H2A0E2_9CAUD	NA	NA
UHGV-0095239_48	Structural annotation	PF02839, NF041539	NA	NA
UHGV-0095239_49	PHROG	phrog_6195	tail protein	tail
UHGV-0095239_49	UniRef90	UniRef90_A0A7U3MW91	Virion morphogenesis protein	NA
UHGV-0095239_49	eggNOG-mapper	1121101.HMPREF1532_02604	NA	NA
UHGV-0095239_49	Structural annotation	PF05069	NA	NA
UHGV-0095239_50	PHROG	phrog_8145	NA	unknown function
UHGV-0095239_50	eggNOG-mapper	1176422.I6R1A5_9CAUD	NA	NA
UHGV-0095239_50	Structural annotation	PF08873	NA	NA
UHGV-0095239_52	PHROG	phrog_8914	virion structural protein	head and packaging
UHGV-0095239_52	UniRef90	UniRef90_A0A088C4G9	Tail assembly chaperone	NA
UHGV-0095239_52	eggNOG-mapper	99179.B5TR86_9CAUD	NA	NA
UHGV-0095239_53	KOfam	K18626	TCHH; trichohyalin	NA
UHGV-0095239_53	PHROG	phrog_20660	tail length tape measure protein	tail
UHGV-0095239_53	UniRef90	UniRef90_H2A0C7	Putative DNA segregation protein	NA
UHGV-0095239_53	eggNOG-mapper	1105171.H2A0C7_9CAUD	NA	NA
UHGV-0095239_54	PHROG	phrog_19383	NA	unknown function
UHGV-0095239_54	eggNOG-mapper	1105171.H2A0C6_9CAUD	NA	NA
UHGV-0095239_54	Structural annotation	PF17994, NF033675	NA	NA
UHGV-0095239_55	PHROG	phrog_35885	NA	unknown function
UHGV-0095239_55	eggNOG-mapper	1176422.I6S2N2_9CAUD	NA	NA