UHGV-0095321

Genome information

Genome length 20,704 bps

CDS count 31

Completeness 51.51% (medium-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0095321
vOTU ID	vOTU-031135
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_234986
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.3
Jumbo phage	No

Genome content
Genome length	20,704 bps
GC content	39.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	96.37%
Average CDS length	648.77 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0095321_7	PHROG	phrog_35955	NA	unknown function
UHGV-0095321_7	eggNOG-mapper	435591.BDI_0859	DnaD domain protein	NA
UHGV-0095321_7	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0095321_7	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0095321_8	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0095321_8	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0095321_8	UniRef90	UniRef90_E5CG76	DNA helicase	NA
UHGV-0095321_8	eggNOG-mapper	1077285.AGDG01000032_gene4173	Participates in initiation and elongation during chromosome replication	NA
UHGV-0095321_8	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0095321_8	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0095321_8	COG	COG0305	Replicative DNA helicase	NA
UHGV-0095321_8	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0095321_13	UniRef90	UniRef90_A0A496C6J9	Ribbon-helix-helix domain-containing protein	NA
UHGV-0095321_13	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0095321_15	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0095321_15	UniRef90	UniRef90_E5CG94	HNH domain-containing protein	NA
UHGV-0095321_15	eggNOG-mapper	1268240.ATFI01000007_gene425	HNH endonuclease	NA
UHGV-0095321_15	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0095321_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0095321_17	UniRef90	UniRef90_A0A081U8A7	NA	NA
UHGV-0095321_17	eggNOG-mapper	883096.HMPREF9699_01325	NA	NA
UHGV-0095321_17	Pfam	PF16476	NA	DUF5053
UHGV-0095321_17	Structural annotation	PF16476	NA	NA
UHGV-0095321_18	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0095321_18	UniRef90	UniRef90_E5CG97	p27 family putative phage terminase, small subunit	NA
UHGV-0095321_18	eggNOG-mapper	1268240.ATFI01000007_gene422	Phage terminase, small subunit	NA
UHGV-0095321_18	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0095321_18	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0095321_18	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0095321_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0095321_19	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0095321_19	UniRef90	UniRef90_A0A3E5G6E2	Terminase large subunit	NA
UHGV-0095321_19	eggNOG-mapper	1268240.ATFI01000007_gene421	Phage Terminase	NA
UHGV-0095321_19	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0095321_19	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0095321_19	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0095321_19	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0095321_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0095321_20	UniRef90	UniRef90_UPI0005A9A0D8	phage portal protein	NA
UHGV-0095321_20	eggNOG-mapper	1347393.HG726026_gene2612	Phage portal protein	NA
UHGV-0095321_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0095321_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0095321_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0095321_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0095321_21	KOfam	K06904	NA	NA
UHGV-0095321_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0095321_21	UniRef90	UniRef90_UPI0004B8C721	HK97 family phage prohead protease	NA
UHGV-0095321_21	eggNOG-mapper	1347393.HG726026_gene2613	Caudovirus prohead serine protease	NA
UHGV-0095321_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0095321_21	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0095321_21	COG	COG3740	Phage head maturation protease	NA
UHGV-0095321_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0095321_22	PHROG	phrog_617	major head protein	head and packaging
UHGV-0095321_22	UniRef90	UniRef90_UPI0004BBB559	phage major capsid protein	NA
UHGV-0095321_22	eggNOG-mapper	1347393.HG726026_gene2614	Phage capsid family	NA
UHGV-0095321_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0095321_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0095321_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0095321_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0095321_23	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0095321_23	UniRef90	UniRef90_A0A0P0GJV8	Phage gp6-like head-tail connector protein	NA
UHGV-0095321_23	eggNOG-mapper	1268240.ATFI01000007_gene417	Phage gp6-like head-tail connector protein	NA
UHGV-0095321_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0095321_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0095321_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0095321_24	PHROG	phrog_25	head closure Hc1	connector
UHGV-0095321_24	UniRef90	UniRef90_A0A1G6G5N4	Phage head-tail joining protein	NA
UHGV-0095321_24	eggNOG-mapper	1347393.HG726026_gene2616	Phage head-tail joining protein	NA
UHGV-0095321_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0095321_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0095321_25	UniRef90	UniRef90_E2N7Z2	Putative phage protein, HK97 gp10 family	NA
UHGV-0095321_25	eggNOG-mapper	1268240.ATFI01000007_gene415	NA	NA
UHGV-0095321_25	Structural annotation	PF20039, TIGR01725	NA	NA
UHGV-0095321_26	UniRef90	UniRef90_UPI001CCBF085	NA	NA
UHGV-0095321_26	eggNOG-mapper	1347393.HG726026_gene2618	NA	NA
UHGV-0095321_26	Structural annotation	PF11367, COG5003	NA	NA
UHGV-0095321_27	PHROG	phrog_1407	major tail protein	tail
UHGV-0095321_27	UniRef90	UniRef90_A0A449I4M1	Phage major tail protein 2	NA
UHGV-0095321_27	eggNOG-mapper	1347393.HG726026_gene2619	Phage tail tube protein	NA
UHGV-0095321_27	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0095321_27	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0095321_28	eggNOG-mapper	1268240.ATFI01000007_gene412	NA	NA
UHGV-0095321_29	PHROG	phrog_2335	tail length tape measure protein	tail
UHGV-0095321_29	UniRef90	UniRef90_A0A1G6G5E1	Tape measure domain-containing protein	NA
UHGV-0095321_29	eggNOG-mapper	1268240.ATFI01000007_gene411	tape measure	NA
UHGV-0095321_29	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0095321_29	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0095321_29	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0095321_29	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0095321_30	PHROG	phrog_30639	NA	unknown function
UHGV-0095321_30	eggNOG-mapper	1268240.ATFI01000007_gene410	NA	NA
UHGV-0095321_30	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0095321_31	eggNOG-mapper	1347393.HG726021_gene469	COG3209 Rhs family protein	NA
UHGV-0095321_31	COG	COG4926	Phage-related protein	NA