UHGV-0095349

Genome information

Genome length 41,332 bps

CDS count 79

Completeness 52.33% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0095349
vOTU ID	vOTU-026876
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_229605
BioSample	SAMEA3708578
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	0
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.69
Jumbo phage	No

Genome content
Genome length	41,332 bps
GC content	37.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	79
CDS density	84.02%
Average CDS length	444.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0095349_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0095349_2	PHROG	phrog_6745	endolysin	lysis
UHGV-0095349_2	UniRef90	UniRef90_A0A412SB50	SH3b domain-containing protein	NA
UHGV-0095349_2	eggNOG-mapper	476272.RUMHYD_02876	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0095349_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0095349_2	Pfam	PF05257	CHAP domain	CHAP
UHGV-0095349_2	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0095349_2	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0095349_2	Structural annotation	PF01183, PF18342, PF14603, NF040678, TIGR04303, COG3757, COG3807	NA	NA
UHGV-0095349_3	KOfam	K11641	natR; two-component system, LytTR family, response regulator NatR	NA
UHGV-0095349_3	PHROG	phrog_8810	NA	unknown function
UHGV-0095349_3	UniRef90	UniRef90_A0A1C5RZQ5	Stage 0 sporulation protein A homolog	NA
UHGV-0095349_3	eggNOG-mapper	1123009.AUID01000024_gene1449	NA	NA
UHGV-0095349_3	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0095349_3	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0095349_3	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0095349_3	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0095349_4	Structural annotation	PF02701, NF041869	NA	NA
UHGV-0095349_9	Structural annotation	PF14947, NF008122, COG4754	NA	NA
UHGV-0095349_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0095349_10	UniRef90	UniRef90_A0A412SB20	XRE family transcriptional regulator	NA
UHGV-0095349_10	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0095349_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0095349_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0095349_10	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0095349_11	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0095349_11	UniRef90	UniRef90_A0A412SBB4	XRE family transcriptional regulator	NA
UHGV-0095349_11	eggNOG-mapper	1423806.JCM15457_163	Helix-turn-helix XRE-family like proteins	NA
UHGV-0095349_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0095349_11	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0095349_12	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0095349_12	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0095349_12	UniRef90	UniRef90_A0A6N2U2M0	Phage antirepressor protein KilAC domain protein	NA
UHGV-0095349_12	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0095349_12	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0095349_12	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0095349_12	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0095349_12	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0095349_14	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0095349_14	UniRef90	UniRef90_UPI0018972D4E	ORF6C domain-containing protein	NA
UHGV-0095349_14	eggNOG-mapper	596315.HMPREF0634_0237	BRO family, N-terminal domain protein	NA
UHGV-0095349_14	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0095349_14	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0095349_14	COG	COG3617	Prophage antirepressor	NA
UHGV-0095349_14	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0095349_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0095349_16	PHROG	phrog_26861	NA	unknown function
UHGV-0095349_16	UniRef90	UniRef90_A0A412SAX1	Single-stranded DNA-binding protein	NA
UHGV-0095349_16	eggNOG-mapper	1121115.AXVN01000037_gene3238	NA	NA
UHGV-0095349_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0095349_16	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0095349_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0095349_16	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0095349_17	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0095349_17	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0095349_17	UniRef90	UniRef90_A0A373NR21	AAA_23 domain-containing protein	NA
UHGV-0095349_17	eggNOG-mapper	476272.RUMHYD_03317	nuclear chromosome segregation	NA
UHGV-0095349_17	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0095349_17	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0095349_18	PHROG	phrog_20040	NA	unknown function
UHGV-0095349_18	eggNOG-mapper	1538644.KO02_12130	NA	NA
UHGV-0095349_19	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0095349_19	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0095349_20	PHROG	phrog_15946	NA	unknown function
UHGV-0095349_20	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0095349_21	eggNOG-mapper	397290.C810_01459	NA	NA
UHGV-0095349_21	Structural annotation	TIGR01898, COG1604	NA	NA
UHGV-0095349_22	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0095349_22	UniRef90	UniRef90_A0A3E5EP23	PHB domain-containing protein	NA
UHGV-0095349_22	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-0095349_22	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0095349_23	KOfam	K06940	NA	NA
UHGV-0095349_23	PHROG	phrog_32498	NA	unknown function
UHGV-0095349_23	UniRef90	UniRef90_A0A415HVR5	YkgJ family cysteine cluster protein	NA
UHGV-0095349_23	eggNOG-mapper	476272.RUMHYD_03327	Putative zinc- or iron-chelating domain	NA
UHGV-0095349_23	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0095349_24	PHROG	phrog_9958	NA	unknown function
UHGV-0095349_24	UniRef90	UniRef90_A0A4Q5C6P1	NA	NA
UHGV-0095349_24	eggNOG-mapper	658655.HMPREF0988_00874	NA	NA
UHGV-0095349_24	Structural annotation	PF19789	NA	NA
UHGV-0095349_25	PHROG	phrog_9958	NA	unknown function
UHGV-0095349_25	UniRef90	UniRef90_A0A3E5ENL3	NA	NA
UHGV-0095349_25	eggNOG-mapper	658655.HMPREF0988_00873	NA	NA
UHGV-0095349_25	Pfam	PF19789	NA	DUF6273
UHGV-0095349_25	Structural annotation	PF19789	NA	NA
UHGV-0095349_26	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0095349_26	UniRef90	UniRef90_A0A3E5ENL0	Four helix bundle protein	NA
UHGV-0095349_26	eggNOG-mapper	658655.HMPREF0988_00872	NA	NA
UHGV-0095349_26	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-0095349_26	Structural annotation	PF05635, NF033474, COG3308	NA	NA
UHGV-0095349_27	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0095349_27	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0095349_27	UniRef90	UniRef90_A0A3E5EPX6	Reverse transcriptase domain-containing protein	NA
UHGV-0095349_27	eggNOG-mapper	658655.HMPREF0988_00871	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0095349_27	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0095349_27	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0095349_27	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0095349_27	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0095349_28	PHROG	phrog_25456	NA	unknown function
UHGV-0095349_30	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0095349_30	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0095349_30	UniRef90	UniRef90_A0A3E5ENP5	MBL fold metallo-hydrolase	NA
UHGV-0095349_30	eggNOG-mapper	397290.C810_01486	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0095349_30	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0095349_30	dbAPIS	APIS058	NA	NA
UHGV-0095349_30	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0095349_30	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0095349_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0095349_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0095349_34	UniRef90	UniRef90_A0A1C5S1M0	Single-stranded DNA-binding protein	NA
UHGV-0095349_34	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0095349_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0095349_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0095349_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0095349_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0095349_34	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0095349_36	PHROG	phrog_2164	NA	unknown function
UHGV-0095349_37	PHROG	phrog_19106	NA	unknown function
UHGV-0095349_37	UniRef90	UniRef90_A0A412EKN4	GIY-YIG nuclease family protein	NA
UHGV-0095349_37	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0095349_37	Structural annotation	TIGR01453	NA	NA
UHGV-0095349_38	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0095349_38	UniRef90	UniRef90_A0A412EKY9	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0095349_38	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0095349_38	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0095349_38	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0095349_41	UniRef90	UniRef90_UPI0009C032EA	helix-turn-helix domain-containing protein	NA
UHGV-0095349_41	eggNOG-mapper	1232453.BAIF02000002_gene1278	NA	NA
UHGV-0095349_43	Structural annotation	PF06107, COG4481	NA	NA
UHGV-0095349_44	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0095349_44	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0095349_44	UniRef90	UniRef90_C0BC27	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0095349_44	eggNOG-mapper	1499683.CCFF01000017_gene2594	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0095349_44	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0095349_44	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0095349_44	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0095349_44	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0095349_44	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0095349_45	Structural annotation	NF041070	NA	NA
UHGV-0095349_46	Structural annotation	COG4446	NA	NA
UHGV-0095349_47	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0095349_48	PHROG	phrog_4601	NA	unknown function
UHGV-0095349_50	PHROG	phrog_15198	NA	unknown function
UHGV-0095349_50	UniRef90	UniRef90_UPI001D099705	NA	NA
UHGV-0095349_50	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0095349_50	Pfam	PF04448	NA	DUF551
UHGV-0095349_53	AcrCatalog	cluster_11670	NA	NA
UHGV-0095349_54	eggNOG-mapper	397291.C804_00971	NA	NA
UHGV-0095349_54	Structural annotation	PF02701, TIGR03655, COG3677	NA	NA
UHGV-0095349_55	PHROG	phrog_20593	NA	unknown function
UHGV-0095349_55	Structural annotation	PF07870, TIGR02501	NA	NA
UHGV-0095349_56	PHROG	phrog_20593	NA	unknown function
UHGV-0095349_59	PHROG	phrog_38832	NA	unknown function
UHGV-0095349_59	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0095349_59	Structural annotation	PF09038	NA	NA
UHGV-0095349_62	PHROG	phrog_10714	NA	unknown function
UHGV-0095349_62	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0095349_63	PHROG	phrog_2470	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0095349_63	UniRef90	UniRef90_UPI0019236C01	NA	NA
UHGV-0095349_63	eggNOG-mapper	319236.JCM19294_1043	NA	NA
UHGV-0095349_63	Pfam	PF11750	NA	DUF3307
UHGV-0095349_63	Structural annotation	PF11750	NA	NA
UHGV-0095349_64	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0095349_64	UniRef90	UniRef90_A0A317UCF5	Phage_rep_org_N domain-containing protein	NA
UHGV-0095349_64	eggNOG-mapper	1414720.CBYM010000001_gene675	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0095349_64	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0095349_64	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0095349_64	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0095349_65	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0095349_65	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0095349_65	UniRef90	UniRef90_A0A3E5ENL1	Bac_DnaA domain-containing protein	NA
UHGV-0095349_65	eggNOG-mapper	1408323.JQKK01000006_gene526	Bacterial dnaA protein	NA
UHGV-0095349_65	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0095349_65	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0095349_65	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0095349_69	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0095349_69	PHROG	phrog_95	integrase	integration and excision
UHGV-0095349_69	UniRef90	UniRef90_A0A412SB73	Recombinase family protein	NA
UHGV-0095349_69	eggNOG-mapper	457412.RSAG_00880	Resolvase, N terminal domain	NA
UHGV-0095349_69	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0095349_69	Pfam	PF07508	Recombinase	Recombinase
UHGV-0095349_69	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0095349_69	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0095349_69	Structural annotation	PF07508, PF00239, PF14282, NF041201, COG1961, COG1579	NA	NA
UHGV-0095349_70	PHROG	phrog_8680	NA	unknown function
UHGV-0095349_70	UniRef90	UniRef90_A0A412EMT7	NA	NA
UHGV-0095349_70	eggNOG-mapper	476272.RUMHYD_01896	NA	NA
UHGV-0095349_70	Pfam	PF14386	NA	DUF4417
UHGV-0095349_70	Structural annotation	PF14386	NA	NA
UHGV-0095349_74	Structural annotation	PF18267	NA	NA
UHGV-0095349_75	UniRef90	UniRef90_UPI000C24CD2A	antirestriction protein ArdA	NA
UHGV-0095349_77	UniRef90	UniRef90_A0A3E5ENN4	XRE family transcriptional regulator	NA
UHGV-0095349_77	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0095349_77	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0095349_77	Structural annotation	PF13443, NF000090, COG3655	NA	NA