UHGV-0095432

Genome information

Genome length 44,245 bps

CDS count 66

Completeness 56.35% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0095432
vOTU ID	vOTU-039158
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_223301
BioSample	SAMEA3541523
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	1.43
Jumbo phage	No

Genome content
Genome length	44,245 bps
GC content	40.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	89.73%
Average CDS length	603.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0095432_1	UniRef90	UniRef90_A0A3C1XIS9	NA	NA
UHGV-0095432_1	eggNOG-mapper	411459.RUMOBE_02036	NA	NA
UHGV-0095432_1	Pfam	PF14199	NA	DUF4317
UHGV-0095432_2	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0095432_2	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0095432_2	eggNOG-mapper	326426.Bbr_0313	NA	NA
UHGV-0095432_2	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0095432_2	Structural annotation	PF12643, NF001613, COG0140	NA	NA
UHGV-0095432_3	Structural annotation	PF17630	NA	NA
UHGV-0095432_4	eggNOG-mapper	1235799.C818_02666	NA	NA
UHGV-0095432_4	Structural annotation	PF11302	NA	NA
UHGV-0095432_5	PHROG	phrog_7711	NA	unknown function
UHGV-0095432_5	UniRef90	UniRef90_A0A0N7JDH6	NA	NA
UHGV-0095432_5	eggNOG-mapper	268407.PWYN_15580	NA	NA
UHGV-0095432_9	PHROG	phrog_8684	NA	unknown function
UHGV-0095432_9	UniRef90	UniRef90_UPI0015712E85	YopX family protein	NA
UHGV-0095432_9	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0095432_9	Pfam	PF09643	YopX protein	YopX
UHGV-0095432_9	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0095432_9	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0095432_10	PHROG	phrog_20593	NA	unknown function
UHGV-0095432_11	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0095432_11	AcrCatalog	cluster_11670	NA	NA
UHGV-0095432_12	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0095432_12	UniRef90	UniRef90_UPI00156DBFFE	radical SAM protein	NA
UHGV-0095432_12	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-0095432_12	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0095432_12	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0095432_13	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0095432_13	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0095432_13	UniRef90	UniRef90_A0A317UED7	Restriction alleviation protein, Lar family	NA
UHGV-0095432_13	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0095432_13	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0095432_13	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0095432_13	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0095432_15	Structural annotation	PF06107, COG4481	NA	NA
UHGV-0095432_17	eggNOG-mapper	1232453.BAIF02000002_gene1278	NA	NA
UHGV-0095432_19	UniRef90	UniRef90_A0A317UAL9	LexA_DNA_bind domain-containing protein	NA
UHGV-0095432_19	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0095432_19	Structural annotation	PF01726, MF_00732, TIGR00738, COG0640	NA	NA
UHGV-0095432_20	PHROG	phrog_19106	NA	unknown function
UHGV-0095432_20	UniRef90	UniRef90_A0A317UEK9	GIY-YIG domain-containing protein	NA
UHGV-0095432_20	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0095432_20	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0095432_20	Structural annotation	TIGR01453	NA	NA
UHGV-0095432_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0095432_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0095432_21	UniRef90	UniRef90_A0A317UFG5	Single-stranded DNA-binding protein	NA
UHGV-0095432_21	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0095432_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0095432_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0095432_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0095432_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0095432_21	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0095432_23	PHROG	phrog_30930	NA	unknown function
UHGV-0095432_23	eggNOG-mapper	1214184.ALKY01000039_gene933	NA	NA
UHGV-0095432_23	Structural annotation	PF05037	NA	NA
UHGV-0095432_25	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0095432_25	UniRef90	UniRef90_A0A3E5ENP5	MBL fold metallo-hydrolase	NA
UHGV-0095432_25	eggNOG-mapper	476272.RUMHYD_03342	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0095432_25	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0095432_25	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0095432_26	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0095432_26	UniRef90	UniRef90_A0A412SAY1	MBL fold metallo-hydrolase	NA
UHGV-0095432_26	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0095432_26	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0095432_26	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0095432_27	PHROG	phrog_25456	NA	unknown function
UHGV-0095432_28	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0095432_28	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0095432_28	UniRef90	UniRef90_A0A317UBP4	Reverse transcriptase domain-containing protein	NA
UHGV-0095432_28	eggNOG-mapper	658655.HMPREF0988_00871	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0095432_28	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0095432_28	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0095432_28	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0095432_28	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0095432_29	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0095432_29	UniRef90	UniRef90_A0A3E5ENL0	Four helix bundle protein	NA
UHGV-0095432_29	eggNOG-mapper	658655.HMPREF0988_00872	NA	NA
UHGV-0095432_29	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-0095432_29	Structural annotation	PF05635, NF033474, COG3308	NA	NA
UHGV-0095432_30	PHROG	phrog_9958	NA	unknown function
UHGV-0095432_30	UniRef90	UniRef90_A0A1C5S103	NA	NA
UHGV-0095432_30	eggNOG-mapper	658655.HMPREF0988_00873	NA	NA
UHGV-0095432_30	Pfam	PF19789	NA	DUF6273
UHGV-0095432_30	Structural annotation	PF19789	NA	NA
UHGV-0095432_31	PHROG	phrog_9958	NA	unknown function
UHGV-0095432_31	UniRef90	UniRef90_F7JKD2	NA	NA
UHGV-0095432_31	eggNOG-mapper	658655.HMPREF0988_00874	NA	NA
UHGV-0095432_31	Pfam	PF19789	NA	DUF6273
UHGV-0095432_31	Structural annotation	PF19789	NA	NA
UHGV-0095432_32	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0095432_32	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0095432_32	UniRef90	UniRef90_A0A1C5WMV6	p33	NA
UHGV-0095432_32	eggNOG-mapper	431943.CKL_0416	RecT family	NA
UHGV-0095432_32	Pfam	PF03837	RecT family	RecT
UHGV-0095432_32	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0095432_32	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0095432_32	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0095432_33	Structural annotation	TIGR02582, COG1604	NA	NA
UHGV-0095432_34	PHROG	phrog_15946	NA	unknown function
UHGV-0095432_34	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0095432_35	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0095432_35	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0095432_35	UniRef90	UniRef90_A0A373NR21	AAA_23 domain-containing protein	NA
UHGV-0095432_35	eggNOG-mapper	476272.RUMHYD_03317	nuclear chromosome segregation	NA
UHGV-0095432_35	Pfam	PF13476	AAA domain	AAA_23
UHGV-0095432_35	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0095432_35	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0095432_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0095432_36	PHROG	phrog_26861	NA	unknown function
UHGV-0095432_36	UniRef90	UniRef90_A0A3B9PW42	Single-stranded DNA-binding protein	NA
UHGV-0095432_36	eggNOG-mapper	1120998.AUFC01000016_gene32	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0095432_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0095432_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0095432_36	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0095432_40	Structural annotation	PF10922	NA	NA
UHGV-0095432_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0095432_43	UniRef90	UniRef90_A0A412ELD4	XRE family transcriptional regulator	NA
UHGV-0095432_43	eggNOG-mapper	1235801.C822_00106	Helix-turn-helix XRE-family like proteins	NA
UHGV-0095432_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0095432_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0095432_43	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0095432_44	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0095432_44	UniRef90	UniRef90_A0A416SLU4	XRE family transcriptional regulator	NA
UHGV-0095432_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0095432_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0095432_44	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0095432_46	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-0095432_46	PHROG	phrog_8810	NA	unknown function
UHGV-0095432_46	UniRef90	UniRef90_A0A395X907	Stage 0 sporulation protein A homolog	NA
UHGV-0095432_46	eggNOG-mapper	1297617.JPJD01000032_gene2091	NA	NA
UHGV-0095432_46	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0095432_46	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0095432_46	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0095432_46	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0095432_47	PHROG	phrog_806	NA	unknown function
UHGV-0095432_47	UniRef90	UniRef90_A0A011W003	NA	NA
UHGV-0095432_47	eggNOG-mapper	697329.Rumal_0454	NA	NA
UHGV-0095432_47	Pfam	PF11611	NA	DUF4352
UHGV-0095432_47	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0095432_48	KOfam	K07273	acm; lysozyme	NA
UHGV-0095432_48	PHROG	phrog_291	endolysin	lysis
UHGV-0095432_48	UniRef90	UniRef90_A0A317UBE2	PG_binding_1 domain-containing protein	NA
UHGV-0095432_48	eggNOG-mapper	476272.RUMHYD_02876	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0095432_48	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0095432_48	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0095432_48	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0095432_48	Structural annotation	PF01183, TIGR02594, TIGR04303, COG3757, COG3942	NA	NA
UHGV-0095432_49	UniRef90	UniRef90_UPI001C0EBDDC	pyocin knob domain-containing protein	NA
UHGV-0095432_50	PHROG	phrog_6616	tail protein	tail
UHGV-0095432_50	UniRef90	UniRef90_A0A317UCC3	Peptidase S74 domain-containing protein	NA
UHGV-0095432_50	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0095432_50	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0095432_50	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0095432_50	Structural annotation	PF05113, PF01835, PF03921, NF033848, COG3500	NA	NA
UHGV-0095432_51	PHROG	phrog_1194	NA	unknown function
UHGV-0095432_51	eggNOG-mapper	673837.D2IZU9_9CAUD	NA	NA
UHGV-0095432_51	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0095432_52	PHROG	phrog_32721	NA	unknown function
UHGV-0095432_52	UniRef90	UniRef90_UPI00085C0DB7	Ig-like domain-containing protein	NA
UHGV-0095432_52	eggNOG-mapper	397288.C806_03994	domain, Protein	NA
UHGV-0095432_52	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0095432_52	COG	COG5492	NA	NA
UHGV-0095432_52	Structural annotation	PF02368, PF08758, PF06832, MF_04116, NF010681, COG5492	NA	NA
UHGV-0095432_54	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0095432_54	UniRef90	UniRef90_A0A412EKX5	Helix-turn-helix domain-containing protein	NA
UHGV-0095432_54	eggNOG-mapper	1121422.AUMW01000049_gene1257	Transcriptional regulator	NA
UHGV-0095432_54	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0095432_54	Structural annotation	PF05584, MF_01909, NF033788, COG1675	NA	NA
UHGV-0095432_55	PHROG	phrog_28918	NA	unknown function
UHGV-0095432_55	UniRef90	UniRef90_A0A1C6H654	Phage-related protein	NA
UHGV-0095432_55	eggNOG-mapper	97139.C824_02812	phage tail tape measure protein	NA
UHGV-0095432_55	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0095432_57	PHROG	phrog_36112	NA	unknown function
UHGV-0095432_57	eggNOG-mapper	476272.RUMHYD_01969	NA	NA
UHGV-0095432_57	Structural annotation	PF16478	NA	NA
UHGV-0095432_58	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0095432_58	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0095432_59	PHROG	phrog_1129	holin	lysis
UHGV-0095432_59	UniRef90	UniRef90_UPI001D072DD9	phage holin family protein	NA
UHGV-0095432_59	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0095432_59	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0095432_59	Structural annotation	PF16079	NA	NA
UHGV-0095432_60	Structural annotation	PF05657	NA	NA
UHGV-0095432_61	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0095432_62	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0095432_63	PHROG	phrog_11541	NA	unknown function
UHGV-0095432_63	UniRef90	UniRef90_UPI001CDBB3ED	SGNH/GDSL hydrolase family protein	NA
UHGV-0095432_63	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0095432_63	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0095432_63	Structural annotation	PF10651	NA	NA
UHGV-0095432_64	PHROG	phrog_19695	NA	unknown function
UHGV-0095432_64	eggNOG-mapper	1232452.BAIB02000007_gene1611	NA	NA
UHGV-0095432_64	Structural annotation	PF19714	NA	NA
UHGV-0095432_65	eggNOG-mapper	397290.C810_01336	NA	NA