UHGV-0095437

Genome information

Genome length 24,083 bps

CDS count 32

Completeness 61.64% (medium-quality)

geNomad score 0.9832

Prediction confidence Confident

Genome information
Genome ID	UHGV-0095437
vOTU ID	vOTU-038680
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_223316
BioSample	SAMEA3541523
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9832
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.96
Jumbo phage	No

Genome content
Genome length	24,083 bps
GC content	59.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	95.75%
Average CDS length	724.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0095437_1	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0095437_1	UniRef90	UniRef90_E0NW76	Virulence-associated protein E	NA
UHGV-0095437_1	eggNOG-mapper	1321782.HMPREF1986_02253	Virulence-associated protein E	NA
UHGV-0095437_1	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0095437_1	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0095437_1	Structural annotation	PF05272, NF011296, COG5545	NA	NA
UHGV-0095437_2	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0095437_2	UniRef90	UniRef90_A0A1Y4IDN4	VRR-NUC domain-containing protein	NA
UHGV-0095437_2	eggNOG-mapper	1321782.HMPREF1986_02254	VRR_NUC	NA
UHGV-0095437_2	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-0095437_3	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0095437_3	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0095437_3	UniRef90	UniRef90_A0A1Y4IIP7	DEAD/DEAH box helicase	NA
UHGV-0095437_3	eggNOG-mapper	1321782.HMPREF1986_02255	SNF2 family N-terminal domain	NA
UHGV-0095437_3	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0095437_3	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0095437_3	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0095437_3	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA
UHGV-0095437_4	PHROG	phrog_6568	NA	unknown function
UHGV-0095437_4	eggNOG-mapper	742740.HMPREF9474_02283	NA	NA
UHGV-0095437_5	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0095437_5	UniRef90	UniRef90_A0A3A8YTX2	NA	NA
UHGV-0095437_5	eggNOG-mapper	1321782.HMPREF1986_02257	NA	NA
UHGV-0095437_5	Pfam	PF14359	NA	DUF4406
UHGV-0095437_5	Structural annotation	PF14359, TIGR02133, COG3613	NA	NA
UHGV-0095437_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0095437_6	UniRef90	UniRef90_A0A1C5VVP2	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0095437_6	Pfam	PF07374	NA	DUF1492
UHGV-0095437_6	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0095437_7	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0095437_7	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0095437_7	UniRef90	UniRef90_A0A2J8B1L7	Methyltransferase	NA
UHGV-0095437_7	eggNOG-mapper	1321782.HMPREF1986_02265	N-4 methylation of cytosine	NA
UHGV-0095437_7	PADLOC	MTase_II_00107	Type II methyltransferase	RM
UHGV-0095437_7	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0095437_7	COG	COG0863	DNA modification methylase	NA
UHGV-0095437_8	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0095437_8	UniRef90	UniRef90_A0A1Y4IDU3	Terminase	NA
UHGV-0095437_8	eggNOG-mapper	1321782.HMPREF1986_02260	DNA packaging	NA
UHGV-0095437_8	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0095437_8	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0095437_8	COG	COG5484	NA	NA
UHGV-0095437_8	Structural annotation	PF10668, PF01920, NF040601, COG5484	NA	NA
UHGV-0095437_9	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0095437_9	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0095437_9	UniRef90	UniRef90_A0A1Y4IDP2	Terminase	NA
UHGV-0095437_9	eggNOG-mapper	1321782.HMPREF1986_02261	Phage terminase, large subunit, PBSX family	NA
UHGV-0095437_9	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0095437_9	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0095437_9	COG	COG1783	Phage terminase large subunit	NA
UHGV-0095437_9	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0095437_10	PHROG	phrog_533	portal protein	head and packaging
UHGV-0095437_10	UniRef90	UniRef90_U2UNN6	Putative phage minor capsid protein	NA
UHGV-0095437_10	eggNOG-mapper	1321782.HMPREF1986_02262	NA	NA
UHGV-0095437_10	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0095437_10	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0095437_11	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0095437_11	UniRef90	UniRef90_A0A1Y4IDQ0	Minor capsid protein	NA
UHGV-0095437_11	eggNOG-mapper	1321782.HMPREF1986_02263	NA	NA
UHGV-0095437_11	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0095437_11	COG	COG2369	NA	NA
UHGV-0095437_11	Structural annotation	PF06152	NA	NA
UHGV-0095437_12	KOfam	K07584	NA	NA
UHGV-0095437_12	PHROG	phrog_4478	peptidase	other
UHGV-0095437_12	UniRef90	UniRef90_A0A2T3F038	Ribosomal-processing cysteine protease Prp	NA
UHGV-0095437_12	eggNOG-mapper	1321782.HMPREF1986_02266	Pfam:Peptidase_C108	NA
UHGV-0095437_12	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0095437_12	COG	COG2868	NA	NA
UHGV-0095437_12	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0095437_13	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0095437_13	eggNOG-mapper	1321782.HMPREF1986_02267	NA	NA
UHGV-0095437_13	AcrCatalog	cluster_74817	NA	NA
UHGV-0095437_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0095437_14	UniRef90	UniRef90_A0A1Y4IHK2	Phage major capsid protein	NA
UHGV-0095437_14	eggNOG-mapper	1321782.HMPREF1986_02268	Phage capsid family	NA
UHGV-0095437_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0095437_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0095437_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0095437_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0095437_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0095437_15	eggNOG-mapper	411461.DORFOR_00743	NA	NA
UHGV-0095437_16	PHROG	phrog_3366	NA	unknown function
UHGV-0095437_16	eggNOG-mapper	1235799.C818_04225	NA	NA
UHGV-0095437_16	Structural annotation	PF20536	NA	NA
UHGV-0095437_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0095437_17	UniRef90	UniRef90_UPI00189988A1	minor capsid protein	NA
UHGV-0095437_17	eggNOG-mapper	1321782.HMPREF1986_02271	NA	NA
UHGV-0095437_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0095437_17	Structural annotation	PF11114	NA	NA
UHGV-0095437_18	PHROG	phrog_3266	tail completion	connector
UHGV-0095437_18	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-0095437_18	eggNOG-mapper	1321782.HMPREF1986_02272	NA	NA
UHGV-0095437_18	Structural annotation	PF12691	NA	NA
UHGV-0095437_19	PHROG	phrog_3099	NA	unknown function
UHGV-0095437_19	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-0095437_19	eggNOG-mapper	1321782.HMPREF1986_02273	NA	NA
UHGV-0095437_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0095437_20	PHROG	phrog_4450	NA	unknown function
UHGV-0095437_20	UniRef90	UniRef90_A0A416RQL6	AP endonuclease	NA
UHGV-0095437_20	eggNOG-mapper	931276.Cspa_c07520	NA	NA
UHGV-0095437_20	Pfam	PF20378	NA	DUF6673
UHGV-0095437_20	Structural annotation	PF20378	NA	NA
UHGV-0095437_21	PHROG	phrog_706	NA	unknown function
UHGV-0095437_21	UniRef90	UniRef90_U2UP44	Bacteriophage Gp15 protein	NA
UHGV-0095437_21	eggNOG-mapper	1321782.HMPREF1986_02275	Bacteriophage Gp15 protein	NA
UHGV-0095437_21	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0095437_21	Structural annotation	PF06854	NA	NA
UHGV-0095437_22	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0095437_22	eggNOG-mapper	658655.HMPREF0988_02552	Phage tail tape measure protein, TP901 family	NA
UHGV-0095437_22	COG	COG1511	NA	NA
UHGV-0095437_23	PHROG	phrog_36410	NA	unknown function
UHGV-0095437_23	UniRef90	UniRef90_U2UNP8	Phage tail component protein	NA
UHGV-0095437_23	eggNOG-mapper	1321782.HMPREF1986_02277	PFAM Phage tail protein	NA
UHGV-0095437_23	COG	COG4722	Phage-related protein YomH	NA
UHGV-0095437_23	Structural annotation	PF16774, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0095437_24	PHROG	phrog_538	minor tail protein	tail
UHGV-0095437_24	UniRef90	UniRef90_UPI00188AE414	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0095437_24	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-0095437_24	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0095437_24	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0095437_25	PHROG	phrog_1220	head protein	head and packaging
UHGV-0095437_25	UniRef90	UniRef90_A0A2X0ZY62	Phage structural protein, truncation	NA
UHGV-0095437_25	eggNOG-mapper	1321782.HMPREF1986_02279	COG NOG18825 non supervised orthologous group	NA
UHGV-0095437_25	Structural annotation	PF20747	NA	NA
UHGV-0095437_26	UniRef90	UniRef90_A0A1C6L0B1	NA	NA
UHGV-0095437_26	eggNOG-mapper	1235802.C823_01049	NA	NA
UHGV-0095437_26	Pfam	PF19789	NA	DUF6273
UHGV-0095437_26	Structural annotation	PF19789	NA	NA
UHGV-0095437_27	eggNOG-mapper	97139.C824_00240	NA	NA
UHGV-0095437_27	Structural annotation	PF05635, NF008912	NA	NA
UHGV-0095437_28	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0095437_28	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0095437_28	UniRef90	UniRef90_A0A1Q6JHF3	Reverse transcriptase domain-containing protein	NA
UHGV-0095437_28	eggNOG-mapper	1235802.C823_01102	Reverse transcriptase	NA
UHGV-0095437_28	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0095437_28	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0095437_28	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0095437_28	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0095437_30	PHROG	phrog_1382	NA	unknown function
UHGV-0095437_30	UniRef90	UniRef90_A0A844DM60	ASCH domain-containing protein	NA
UHGV-0095437_30	eggNOG-mapper	1140002.I570_03996	NA	NA
UHGV-0095437_30	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0095437_30	Structural annotation	NF040910	NA	NA
UHGV-0095437_31	PHROG	phrog_1382	NA	unknown function
UHGV-0095437_31	eggNOG-mapper	411902.CLOBOL_00118	NA	NA
UHGV-0095437_31	NCBIFam	NF040910.1	CD1375 family protein	NA