UHGV-0095449

Genome information

Genome length 43,026 bps

CDS count 71

Completeness 99.90% (high-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0095449
vOTU ID	vOTU-008334
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_202494
BioSample	SAMEA3449260
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.36
Jumbo phage	No

Genome content
Genome length	43,026 bps
GC content	52.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	90.40%
Average CDS length	550.65 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0095449_3	PHROG	phrog_13890	NA	unknown function
UHGV-0095449_3	UniRef90	UniRef90_A0A417NGM5	Arc family DNA-binding protein	NA
UHGV-0095449_3	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-0095449_6	Structural annotation	NF041070	NA	NA
UHGV-0095449_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0095449_10	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0095449_10	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0095449_10	COG	COG1511	NA	NA
UHGV-0095449_10	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0095449_11	PHROG	phrog_706	NA	unknown function
UHGV-0095449_11	UniRef90	UniRef90_UPI001D069FB9	Gp15 family bacteriophage protein	NA
UHGV-0095449_11	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0095449_11	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0095449_11	Structural annotation	PF06854	NA	NA
UHGV-0095449_12	PHROG	phrog_11299	NA	unknown function
UHGV-0095449_12	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0095449_12	Structural annotation	PF10666	NA	NA
UHGV-0095449_15	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0095449_15	PHROG	phrog_6904	NA	unknown function
UHGV-0095449_15	UniRef90	UniRef90_UPI00047C5BDB	antA/AntB antirepressor family protein	NA
UHGV-0095449_15	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0095449_15	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0095449_15	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0095449_17	eggNOG-mapper	1009370.ALO_17461	NA	NA
UHGV-0095449_18	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0095449_18	UniRef90	UniRef90_A0A1C5NSG8	Sigma-70	NA
UHGV-0095449_18	eggNOG-mapper	1121344.JHZO01000004_gene1167	Sigma-70, region 4	NA
UHGV-0095449_18	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0095449_18	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0095449_18	Structural annotation	PF07638, MF_00959, NF006147, COG0568	NA	NA
UHGV-0095449_20	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0095449_20	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0095449_20	UniRef90	UniRef90_UPI001C111256	AAA family ATPase	NA
UHGV-0095449_20	eggNOG-mapper	1121020.JIAG01000005_gene2356	Participates in initiation and elongation during chromosome replication	NA
UHGV-0095449_20	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0095449_20	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0095449_20	COG	COG0305	Replicative DNA helicase	NA
UHGV-0095449_20	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0095449_21	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0095449_21	UniRef90	UniRef90_A0A4Z0JMB2	DNA replication protein DnaD	NA
UHGV-0095449_21	eggNOG-mapper	1423775.BAMN01000006_gene1070	Replication initiation and membrane attachment	NA
UHGV-0095449_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0095449_22	UniRef90	UniRef90_A0A1C5Z6R1	HTH lacI-type domain-containing protein	NA
UHGV-0095449_22	eggNOG-mapper	742738.HMPREF9460_00730	NA	NA
UHGV-0095449_22	Pfam	PF20432	Antitoxin Xre-like helix-turn-helix domain	Xre-like-HTH
UHGV-0095449_22	Structural annotation	PF13560, COG3423	NA	NA
UHGV-0095449_23	Pfam	PF19553	NA	DUF6076
UHGV-0095449_25	KOfam	K14059	int; integrase	NA
UHGV-0095449_25	PHROG	phrog_1	integrase	integration and excision
UHGV-0095449_25	UniRef90	UniRef90_UPI00195997D6	phage integrase SAM-like domain-containing protein	NA
UHGV-0095449_25	eggNOG-mapper	877414.ATWA01000018_gene2094	Phage integrase family	NA
UHGV-0095449_25	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0095449_25	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0095449_26	KOfam	K14059	int; integrase	NA
UHGV-0095449_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0095449_26	UniRef90	UniRef90_UPI001F33A9B4	site-specific integrase	NA
UHGV-0095449_26	eggNOG-mapper	877414.ATWA01000018_gene2094	Phage integrase family	NA
UHGV-0095449_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0095449_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0095449_27	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0095449_28	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0095449_29	PHROG	phrog_20016	NA	unknown function
UHGV-0095449_29	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0095449_29	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0095449_29	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0095449_30	PHROG	phrog_16490	NA	unknown function
UHGV-0095449_30	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0095449_31	PHROG	phrog_22984	NA	unknown function
UHGV-0095449_32	PHROG	phrog_21718	NA	unknown function
UHGV-0095449_32	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0095449_33	PHROG	phrog_3754	NA	unknown function
UHGV-0095449_33	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0095449_36	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0095449_36	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0095449_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0095449_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0095449_36	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0095449_37	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0095449_37	PHROG	phrog_6523	endolysin	lysis
UHGV-0095449_37	UniRef90	UniRef90_R5RXG6	Serine-type D-Ala-D-Ala carboxypeptidase	NA
UHGV-0095449_37	eggNOG-mapper	1519439.JPJG01000023_gene536	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0095449_37	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0095449_37	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0095449_37	Structural annotation	PF02557, MF_01924, NF000380, COG1876	NA	NA
UHGV-0095449_38	PHROG	phrog_13256	NA	unknown function
UHGV-0095449_38	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0095449_40	PHROG	phrog_937	hemolysin	other
UHGV-0095449_40	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0095449_41	PHROG	phrog_27545	NA	unknown function
UHGV-0095449_41	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0095449_41	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0095449_41	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0095449_41	Structural annotation	PF16170	NA	NA
UHGV-0095449_42	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-0095449_42	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0095449_43	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0095449_43	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0095449_45	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0095449_45	UniRef90	UniRef90_R9LW25	Peptidase S74 domain-containing protein	NA
UHGV-0095449_45	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0095449_45	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0095449_45	Structural annotation	PF07902, NF041249	NA	NA
UHGV-0095449_46	PHROG	phrog_32308	NA	unknown function
UHGV-0095449_46	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0095449_46	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0095449_46	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0095449_47	PHROG	phrog_1194	NA	unknown function
UHGV-0095449_47	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0095449_47	Pfam	PF20458	NA	DUF6711
UHGV-0095449_47	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0095449_48	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0095449_48	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0095449_48	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0095449_48	COG	COG1511	NA	NA
UHGV-0095449_48	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0095449_49	PHROG	phrog_806	NA	unknown function
UHGV-0095449_49	UniRef90	UniRef90_UPI00137B5163	NA	NA
UHGV-0095449_49	eggNOG-mapper	476272.RUMHYD_01730	NA	NA
UHGV-0095449_49	Pfam	PF11611	NA	DUF4352
UHGV-0095449_49	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0095449_50	PHROG	phrog_706	NA	unknown function
UHGV-0095449_50	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0095449_50	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0095449_50	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0095449_50	Structural annotation	PF06854	NA	NA
UHGV-0095449_51	PHROG	phrog_11299	NA	unknown function
UHGV-0095449_51	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0095449_51	Structural annotation	PF10666	NA	NA
UHGV-0095449_52	PHROG	phrog_3099	NA	unknown function
UHGV-0095449_52	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0095449_52	Structural annotation	TIGR02126	NA	NA
UHGV-0095449_53	PHROG	phrog_3266	tail completion	connector
UHGV-0095449_53	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0095449_53	Structural annotation	PF12691	NA	NA
UHGV-0095449_54	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0095449_54	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0095449_54	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0095449_54	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0095449_54	Structural annotation	PF11114	NA	NA
UHGV-0095449_55	PHROG	phrog_3366	NA	unknown function
UHGV-0095449_55	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0095449_55	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0095449_56	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0095449_56	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-0095449_57	PHROG	phrog_544	major head protein	head and packaging
UHGV-0095449_57	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0095449_57	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0095449_57	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0095449_57	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0095449_58	Structural annotation	PF06810	NA	NA
UHGV-0095449_59	PHROG	phrog_1233	NA	unknown function
UHGV-0095449_59	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0095449_59	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0095449_60	Structural annotation	PF18152	NA	NA
UHGV-0095449_61	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0095449_61	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0095449_61	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0095449_61	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0095449_61	COG	COG2369	NA	NA
UHGV-0095449_61	Structural annotation	PF06152	NA	NA
UHGV-0095449_62	PHROG	phrog_533	portal protein	head and packaging
UHGV-0095449_62	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0095449_62	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0095449_62	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0095449_62	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0095449_63	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0095449_63	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0095449_63	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0095449_63	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0095449_63	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0095449_63	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0095449_63	COG	COG1783	Phage terminase large subunit	NA
UHGV-0095449_63	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0095449_64	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0095449_64	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0095449_64	Structural annotation	PF13542	NA	NA
UHGV-0095449_65	UniRef90	UniRef90_A0A285PYI3	Homeodomain-like domain	NA
UHGV-0095449_65	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0095449_65	Structural annotation	PF02001, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0095449_67	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-0095449_69	PHROG	phrog_3136	NA	unknown function
UHGV-0095449_69	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0095449_69	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0095449_69	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0095449_70	PHROG	phrog_38832	NA	unknown function
UHGV-0095449_70	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0095449_70	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0095449_71	UniRef90	UniRef90_UPI0012AD39DD	leucine-rich repeat protein	NA