UHGV-0095624

Genome information

Genome length 33,979 bps

CDS count 62

Completeness 94.65% (high-quality)

geNomad score 0.9712

Prediction confidence Confident

Genome information
Genome ID	UHGV-0095624
vOTU ID	vOTU-014762
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_228290
BioSample	SAMEA3708666
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.65% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9712
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.59
Jumbo phage	No

Genome content
Genome length	33,979 bps
GC content	40.68%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	93.14%
Average CDS length	513.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0095624_5	eggNOG-mapper	411468.CLOSCI_01507	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0095624_5	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0095624_9	eggNOG-mapper	293826.Amet_2432	NA	NA
UHGV-0095624_10	PHROG	phrog_521	tail protein	tail
UHGV-0095624_10	UniRef90	UniRef90_UPI001C395867	NA	NA
UHGV-0095624_10	eggNOG-mapper	536232.CLM_1676	NA	NA
UHGV-0095624_10	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0095624_10	COG	COG3778	NA	NA
UHGV-0095624_10	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0095624_11	PHROG	phrog_6	baseplate protein	tail
UHGV-0095624_11	UniRef90	UniRef90_A0A841KVJ9	Putative phage protein gp47/JayE	NA
UHGV-0095624_11	eggNOG-mapper	1123239.KB898628_gene3248	Baseplate J-like protein	NA
UHGV-0095624_11	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0095624_11	COG	COG3299	NA	NA
UHGV-0095624_11	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0095624_12	UniRef90	UniRef90_UPI001C11145A	NA	NA
UHGV-0095624_12	eggNOG-mapper	1203606.HMPREF1526_01352	NA	NA
UHGV-0095624_12	Pfam	PF10934	NA	DUF2634
UHGV-0095624_12	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0095624_12	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0095624_13	PHROG	phrog_579	NA	unknown function
UHGV-0095624_13	UniRef90	UniRef90_A0A7X2XI28	NA	NA
UHGV-0095624_13	eggNOG-mapper	97138.C820_00601	NA	NA
UHGV-0095624_13	Pfam	PF10844	NA	DUF2577
UHGV-0095624_13	Structural annotation	PF10844	NA	NA
UHGV-0095624_14	PHROG	phrog_400	tail protein	tail
UHGV-0095624_14	eggNOG-mapper	293826.Amet_2427	Late control gene D protein	NA
UHGV-0095624_14	COG	COG3500	NA	NA
UHGV-0095624_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0095624_15	PHROG	phrog_5184	NA	unknown function
UHGV-0095624_15	UniRef90	UniRef90_A0A6P1MGG2	Phage portal protein	NA
UHGV-0095624_15	eggNOG-mapper	1120998.AUFC01000013_gene2949	LysM domain	NA
UHGV-0095624_15	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0095624_15	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0095624_16	PHROG	phrog_7972	NA	unknown function
UHGV-0095624_16	UniRef90	UniRef90_A0A3F2ZYT8	Putative prophage LambdaBa01, membrane protein	NA
UHGV-0095624_16	eggNOG-mapper	632245.CLP_2908	phage tail tape measure protein	NA
UHGV-0095624_16	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0095624_16	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0095624_17	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0095624_17	UniRef90	UniRef90_UPI001875BA1A	phage portal protein	NA
UHGV-0095624_17	eggNOG-mapper	1095747.HMPREF1049_2003	NA	NA
UHGV-0095624_17	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0095624_18	PHROG	phrog_365	tail protein	tail
UHGV-0095624_18	UniRef90	UniRef90_A0A2B7YNL1	Phage tail tube protein	NA
UHGV-0095624_18	eggNOG-mapper	469617.FUAG_00843	Phage tail tube protein	NA
UHGV-0095624_18	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0095624_18	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0095624_19	PHROG	phrog_1480	tail sheath	tail
UHGV-0095624_19	UniRef90	UniRef90_A0A7X2XHA8	Phage tail sheath protein	NA
UHGV-0095624_19	eggNOG-mapper	1285586.H131_21277	Phage tail sheath C-terminal domain	NA
UHGV-0095624_19	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0095624_19	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0095624_19	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0095624_20	PHROG	phrog_525	NA	unknown function
UHGV-0095624_20	Pfam	PF20765	NA	DUF6838
UHGV-0095624_20	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0095624_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0095624_21	UniRef90	UniRef90_A0A7X2XHE9	HK97 gp10 family phage protein	NA
UHGV-0095624_21	eggNOG-mapper	1095747.HMPREF1049_2007	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0095624_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0095624_21	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0095624_22	PHROG	phrog_25	head closure Hc1	connector
UHGV-0095624_22	UniRef90	UniRef90_A0A641X786	Phage head closure protein	NA
UHGV-0095624_22	eggNOG-mapper	641107.CDLVIII_1341	Phage head-tail adaptor	NA
UHGV-0095624_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0095624_22	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0095624_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0095624_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0095624_23	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0095624_23	UniRef90	UniRef90_A0A168E1F6	Phage gp6-like head-tail connector protein	NA
UHGV-0095624_23	eggNOG-mapper	632245.CLP_2916	Phage gp6-like head-tail connector protein	NA
UHGV-0095624_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0095624_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0095624_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0095624_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0095624_25	UniRef90	UniRef90_A0A2C1KUJ3	Phage major capsid protein	NA
UHGV-0095624_25	eggNOG-mapper	903814.ELI_1299	Phage capsid family	NA
UHGV-0095624_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0095624_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0095624_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0095624_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0095624_26	KOfam	K06904	NA	NA
UHGV-0095624_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0095624_26	UniRef90	UniRef90_UPI000833AE21	HK97 family phage prohead protease	NA
UHGV-0095624_26	eggNOG-mapper	1285586.H131_21307	Caudovirus prohead serine protease	NA
UHGV-0095624_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0095624_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0095624_26	COG	COG3740	Phage head maturation protease	NA
UHGV-0095624_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0095624_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0095624_27	UniRef90	UniRef90_A0A1M6G7J4	Phage portal protein, HK97 family	NA
UHGV-0095624_27	eggNOG-mapper	742738.HMPREF9460_01364	Portal protein	NA
UHGV-0095624_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0095624_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0095624_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0095624_27	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0095624_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0095624_28	UniRef90	UniRef90_A0A641X3H8	Terminase	NA
UHGV-0095624_28	eggNOG-mapper	796940.HMPREF9628_00147	Phage Terminase	NA
UHGV-0095624_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0095624_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0095624_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0095624_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0095624_29	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0095624_29	UniRef90	UniRef90_R6PVW0	Phage-related protein	NA
UHGV-0095624_29	eggNOG-mapper	903814.ELI_1295	phage terminase small subunit	NA
UHGV-0095624_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0095624_29	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0095624_29	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0095624_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0095624_30	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0095624_30	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0095624_30	UniRef90	UniRef90_A0A0B1Y6Y6	HNHc domain-containing protein	NA
UHGV-0095624_30	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-0095624_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0095624_31	PHROG	phrog_11237	NA	unknown function
UHGV-0095624_31	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-0095624_33	PHROG	phrog_236	nucleotide kinase	other
UHGV-0095624_33	UniRef90	UniRef90_UPI000AC4FB2A	NA	NA
UHGV-0095624_33	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0095624_33	Pfam	PF11753	NA	DUF3310
UHGV-0095624_33	Structural annotation	PF11753	NA	NA
UHGV-0095624_35	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0095624_37	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0095624_37	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0095624_37	UniRef90	UniRef90_A0A414AP29	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0095624_37	eggNOG-mapper	742740.HMPREF9474_04679	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0095624_37	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0095624_37	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0095624_37	COG	COG0338	DNA-adenine methylase	NA
UHGV-0095624_37	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0095624_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0095624_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0095624_39	UniRef90	UniRef90_A0A2V2C1N3	Single-stranded DNA-binding protein	NA
UHGV-0095624_39	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-0095624_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0095624_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0095624_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0095624_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0095624_39	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0095624_40	PHROG	phrog_9804	NA	unknown function
UHGV-0095624_40	UniRef90	UniRef90_A7GI97	Inhibitor_G39P domain-containing protein	NA
UHGV-0095624_40	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-0095624_40	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0095624_40	Structural annotation	PF11417	NA	NA
UHGV-0095624_41	PHROG	phrog_15768	NA	unknown function
UHGV-0095624_41	UniRef90	UniRef90_A0A173W7E0	NA	NA
UHGV-0095624_41	eggNOG-mapper	1123058.KB894219_gene165	COG NOG19076 non supervised orthologous group	NA
UHGV-0095624_41	Pfam	PF19808	NA	DUF6291
UHGV-0095624_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0095624_42	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0095624_42	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0095624_42	UniRef90	UniRef90_A0A136WJ13	Endodeoxyribonuclease RusA	NA
UHGV-0095624_42	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0095624_42	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0095624_42	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0095624_42	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0095624_43	PHROG	phrog_2113	NA	unknown function
UHGV-0095624_43	UniRef90	UniRef90_A0A847W0Y2	HTH domain-containing protein	NA
UHGV-0095624_43	Structural annotation	PF21715, TIGR04176, COG1654	NA	NA
UHGV-0095624_44	PHROG	phrog_7566	NA	unknown function
UHGV-0095624_44	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0095624_45	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0095624_45	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0095624_45	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0095624_45	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0095624_46	PHROG	phrog_14970	NA	unknown function
UHGV-0095624_46	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0095624_46	eggNOG-mapper	457405.FSDG_01558	DNA recombination	NA
UHGV-0095624_46	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0095624_46	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0095624_49	PHROG	phrog_1029	NA	unknown function
UHGV-0095624_49	eggNOG-mapper	552398.HMPREF0866_01625	NA	NA
UHGV-0095624_49	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0095624_50	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0095624_50	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0095624_50	eggNOG-mapper	552398.HMPREF0866_01626	NA	NA
UHGV-0095624_53	PHROG	phrog_6058	NA	unknown function
UHGV-0095624_53	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0095624_55	PHROG	phrog_585	NA	unknown function
UHGV-0095624_55	UniRef90	UniRef90_A0A373ZCW0	NA	NA
UHGV-0095624_55	eggNOG-mapper	97138.C820_00628	NA	NA
UHGV-0095624_55	Pfam	PF10711	NA	DUF2513
UHGV-0095624_55	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0095624_58	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0095624_58	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0095624_58	UniRef90	UniRef90_A0A1Y4HX66	HTH cro/C1-type domain-containing protein	NA
UHGV-0095624_58	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0095624_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0095624_58	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0095624_58	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0095624_60	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0095624_60	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0095624_60	UniRef90	UniRef90_A0A3E2U545	XRE family transcriptional regulator	NA
UHGV-0095624_60	eggNOG-mapper	411468.CLOSCI_01455	Helix-turn-helix XRE-family like proteins	NA
UHGV-0095624_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0095624_60	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0095624_61	PHROG	phrog_888	NA	unknown function
UHGV-0095624_61	UniRef90	UniRef90_A0A6N7SSL1	NA	NA
UHGV-0095624_61	eggNOG-mapper	1292035.H476_2311	Short C-terminal domain	NA
UHGV-0095624_61	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0095624_61	Structural annotation	PF15947, PF14471	NA	NA
UHGV-0095624_62	KOfam	K14059	int; integrase	NA
UHGV-0095624_62	PHROG	phrog_1	integrase	integration and excision
UHGV-0095624_62	UniRef90	UniRef90_UPI001C109D33	site-specific integrase	NA
UHGV-0095624_62	eggNOG-mapper	1238184.CM001792_gene62	Phage integrase family	NA
UHGV-0095624_62	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0095624_62	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0095624_62	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA