UHGV-0095733

Genome information

Genome length 33,289 bps

CDS count 58

Completeness 88.38% (medium-quality)

geNomad score 0.9635

Prediction confidence Confident

Genome information
Genome ID	UHGV-0095733
vOTU ID	vOTU-023896
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_211753
BioSample	SAMEA3449233
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9635
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.98
Jumbo phage	No

Genome content
Genome length	33,289 bps
GC content	30.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.67%
Average CDS length	527.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0095733_1	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-0095733_1	PHROG	phrog_7573	NA	unknown function
UHGV-0095733_1	UniRef90	UniRef90_A0A6N3FD34	Putative manganese catalase	NA
UHGV-0095733_1	eggNOG-mapper	1280689.AUJC01000003_gene1048	PFAM Manganese containing catalase	NA
UHGV-0095733_1	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-0095733_1	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-0095733_1	Structural annotation	PF02185, MF_01506, TIGR04535, COG3546	NA	NA
UHGV-0095733_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0095733_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0095733_2	UniRef90	UniRef90_UPI0018A03072	recombinase family protein	NA
UHGV-0095733_2	eggNOG-mapper	1408422.JHYF01000007_gene1308	Recombinase	NA
UHGV-0095733_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0095733_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0095733_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0095733_3	PHROG	phrog_87	metallo-protease	other
UHGV-0095733_3	UniRef90	UniRef90_UPI00189CC494	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0095733_3	eggNOG-mapper	929506.CbC4_1185	Zn peptidase	NA
UHGV-0095733_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0095733_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0095733_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0095733_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0095733_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0095733_4	UniRef90	UniRef90_UPI0015D48A11	transcriptional regulator	NA
UHGV-0095733_4	eggNOG-mapper	457412.RSAG_00795	sequence-specific DNA binding	NA
UHGV-0095733_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0095733_4	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0095733_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0095733_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0095733_5	UniRef90	UniRef90_UPI0015D48A11	transcriptional regulator	NA
UHGV-0095733_5	eggNOG-mapper	903814.ELI_0076	Helix-turn-helix XRE-family like proteins	NA
UHGV-0095733_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0095733_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0095733_5	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0095733_6	UniRef90	UniRef90_UPI000E12259A	NA	NA
UHGV-0095733_6	eggNOG-mapper	1239381.K4JXN9_9CAUD	NA	NA
UHGV-0095733_6	Pfam	PF05339	NA	DUF739
UHGV-0095733_6	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA
UHGV-0095733_10	eggNOG-mapper	1196322.A370_05749	NA	NA
UHGV-0095733_13	UniRef90	UniRef90_UPI000C0829E3	HNH endonuclease	NA
UHGV-0095733_13	eggNOG-mapper	1347392.CCEZ01000060_gene3272	NA	NA
UHGV-0095733_13	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0095733_13	Structural annotation	COG5126	NA	NA
UHGV-0095733_15	PHROG	phrog_1389	NA	unknown function
UHGV-0095733_15	UniRef90	UniRef90_A0A3P6KVP0	NA	NA
UHGV-0095733_15	eggNOG-mapper	632245.CLP_2637	NA	NA
UHGV-0095733_15	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0095733_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0095733_18	eggNOG-mapper	1414720.CBYM010000002_gene589	NA	NA
UHGV-0095733_18	Structural annotation	PF21578	NA	NA
UHGV-0095733_20	Structural annotation	PF14058	NA	NA
UHGV-0095733_21	PHROG	phrog_8470	NA	unknown function
UHGV-0095733_21	UniRef90	UniRef90_UPI00189E1BD8	PcfJ domain-containing protein	NA
UHGV-0095733_21	eggNOG-mapper	632245.CLP_1619	PcfJ-like protein	NA
UHGV-0095733_21	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0095733_21	Structural annotation	PF14284	NA	NA
UHGV-0095733_22	PHROG	phrog_15609	NA	unknown function
UHGV-0095733_22	UniRef90	UniRef90_UPI00189DA5C3	NA	NA
UHGV-0095733_22	eggNOG-mapper	632245.CLP_1620	NA	NA
UHGV-0095733_22	Pfam	PF11300	NA	DUF3102
UHGV-0095733_22	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0095733_22	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0095733_24	eggNOG-mapper	1280689.AUJC01000011_gene1503	NA	NA
UHGV-0095733_27	PHROG	phrog_5459	NA	unknown function
UHGV-0095733_27	eggNOG-mapper	1033737.CAEV01000076_gene533	NA	NA
UHGV-0095733_30	PHROG	phrog_29188	NA	unknown function
UHGV-0095733_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0095733_32	UniRef90	UniRef90_A0A0D8IFD7	Phage transcriptional activator, RinA family	NA
UHGV-0095733_32	eggNOG-mapper	1415774.U728_493	DNA-templated transcription, initiation	NA
UHGV-0095733_32	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0095733_32	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0095733_33	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0095733_33	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0095733_33	UniRef90	UniRef90_UPI0018A95622	DNA cytosine methyltransferase	NA
UHGV-0095733_33	eggNOG-mapper	1391647.AVSV01000003_gene1798	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0095733_33	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0095733_33	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0095733_33	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0095733_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0095733_33	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0095733_35	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0095733_35	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0095733_35	UniRef90	UniRef90_UPI0018973E8C	HNH endonuclease	NA
UHGV-0095733_35	eggNOG-mapper	1415774.U728_1257	HNH nucleases	NA
UHGV-0095733_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0095733_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0095733_36	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0095733_36	UniRef90	UniRef90_UPI000C06AD39	P27 family phage terminase small subunit	NA
UHGV-0095733_36	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0095733_36	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0095733_36	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0095733_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0095733_37	UniRef90	UniRef90_UPI000C07C8AB	terminase large subunit	NA
UHGV-0095733_37	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0095733_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0095733_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0095733_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0095733_37	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0095733_38	PHROG	phrog_12	portal protein	head and packaging
UHGV-0095733_38	UniRef90	UniRef90_UPI001A9A8447	phage portal protein	NA
UHGV-0095733_38	eggNOG-mapper	1211817.CCAT010000053_gene2130	Phage portal protein	NA
UHGV-0095733_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0095733_38	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0095733_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0095733_38	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0095733_39	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0095733_39	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0095733_39	UniRef90	UniRef90_UPI000C07928B	Clp protease ClpP	NA
UHGV-0095733_39	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0095733_39	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0095733_39	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0095733_39	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0095733_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-0095733_40	UniRef90	UniRef90_UPI00189BAA04	phage major capsid protein	NA
UHGV-0095733_40	eggNOG-mapper	1415774.U728_1252	Phage capsid family	NA
UHGV-0095733_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0095733_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0095733_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0095733_40	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0095733_41	PHROG	phrog_749	NA	unknown function
UHGV-0095733_41	eggNOG-mapper	1415774.U728_1251	NA	NA
UHGV-0095733_42	PHROG	phrog_19734	NA	unknown function
UHGV-0095733_42	UniRef90	UniRef90_UPI00058D8276	phage head closure protein	NA
UHGV-0095733_42	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0095733_43	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0095733_43	UniRef90	UniRef90_UPI0018984D6A	HK97 gp10 family phage protein	NA
UHGV-0095733_43	eggNOG-mapper	1280689.AUJC01000011_gene1525	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0095733_43	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0095733_43	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0095733_43	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0095733_44	PHROG	phrog_78	tail terminator	connector
UHGV-0095733_44	eggNOG-mapper	1211817.CCAT010000053_gene2136	NA	NA
UHGV-0095733_44	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0095733_45	PHROG	phrog_88	major tail protein	tail
UHGV-0095733_45	UniRef90	UniRef90_UPI00058C0646	tail protein	NA
UHGV-0095733_45	eggNOG-mapper	203119.Cthe_1713	Maj_tail_phi13 phage major tail , phi13 family protein	NA
UHGV-0095733_45	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0095733_45	COG	COG5492	NA	NA
UHGV-0095733_45	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0095733_46	PHROG	phrog_2115	tail protein	tail
UHGV-0095733_46	eggNOG-mapper	573061.Clocel_0791	NA	NA
UHGV-0095733_46	Structural annotation	PF11836	NA	NA
UHGV-0095733_47	PHROG	phrog_10988	NA	unknown function
UHGV-0095733_47	UniRef90	UniRef90_UPI00099A40D6	phage tail assembly chaperone	NA
UHGV-0095733_48	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-0095733_48	UniRef90	UniRef90_UPI001897835A	phage tail tape measure protein	NA
UHGV-0095733_48	eggNOG-mapper	1280689.AUJC01000011_gene1530	tape measure	NA
UHGV-0095733_48	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0095733_48	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-0095733_49	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0095733_49	UniRef90	UniRef90_UPI0015B3D59E	phage tail family protein	NA
UHGV-0095733_49	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-0095733_49	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0095733_49	COG	COG4722	Phage-related protein YomH	NA
UHGV-0095733_49	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0095733_50	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0095733_50	UniRef90	UniRef90_UPI000C08C452	phage tail protein	NA
UHGV-0095733_50	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-0095733_50	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0095733_50	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0095733_50	COG	COG4926	Phage-related protein	NA
UHGV-0095733_50	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0095733_51	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-0095733_51	PHROG	phrog_16573	NA	unknown function
UHGV-0095733_51	UniRef90	UniRef90_UPI000D977ADE	BppU family phage baseplate upper protein	NA
UHGV-0095733_51	eggNOG-mapper	1280689.AUJC01000011_gene1533	NA	NA
UHGV-0095733_51	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0095733_51	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0095733_51	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0095733_51	Structural annotation	PF10651, NF007636, COG5456	NA	NA
UHGV-0095733_52	KOfam	K06236	COL1A; collagen type I alpha	NA
UHGV-0095733_52	PHROG	phrog_819	tail protein	tail
UHGV-0095733_52	UniRef90	UniRef90_UPI000D90F2FE	collagen-like protein	NA
UHGV-0095733_52	eggNOG-mapper	33035.JPJF01000093_gene2235	Collagen triple helix repeat (20 copies)	NA
UHGV-0095733_52	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0095733_52	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0095733_53	PHROG	phrog_14064	tail fiber protein	tail
UHGV-0095733_53	eggNOG-mapper	675817.VDA_000914	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0095733_53	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0095733_55	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0095733_56	PHROG	phrog_1863	NA	unknown function
UHGV-0095733_56	eggNOG-mapper	1414720.CBYM010000001_gene713	NA	NA
UHGV-0095733_58	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0095733_58	PHROG	phrog_3088	amidase	lysis
UHGV-0095733_58	UniRef90	UniRef90_A0A2K2TXP5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0095733_58	eggNOG-mapper	1280689.AUJC01000003_gene983	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0095733_58	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0095733_58	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA