UHGV-0095783

Genome information

Genome length 23,905 bps

CDS count 35

Completeness 50.99% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0095783
vOTU ID	vOTU-042332
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_225572
BioSample	SAMEA3708675
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.04
Jumbo phage	No

Genome content
Genome length	23,905 bps
GC content	53.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	90.04%
Average CDS length	621.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0095783_1	PHROG	phrog_191	CII-like transcriptional activator	transcription regulation
UHGV-0095783_1	UniRef90	UniRef90_A0A137BYM9	Lambda phage CII family protein	NA
UHGV-0095783_1	eggNOG-mapper	155148.Q9AZ19_BPHK6	Bacteriophage CII protein	NA
UHGV-0095783_1	Pfam	PF05269	Bacteriophage CII protein	Phage_CII
UHGV-0095783_1	Structural annotation	PF05269	NA	NA
UHGV-0095783_2	PHROG	phrog_1913	tail protein	tail
UHGV-0095783_2	UniRef90	UniRef90_A0A7V7UPZ1	NA	NA
UHGV-0095783_2	eggNOG-mapper	1147146.K7P745_9CAUD	NA	NA
UHGV-0095783_2	Pfam	PF10872	NA	DUF2740
UHGV-0095783_2	Structural annotation	PF10872	NA	NA
UHGV-0095783_3	PHROG	phrog_24933	NA	unknown function
UHGV-0095783_3	UniRef90	UniRef90_Q9T1M5	O protein	NA
UHGV-0095783_3	eggNOG-mapper	1147150.K7PH26_9CAUD	calcium ion binding	NA
UHGV-0095783_3	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0095783_4	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0095783_4	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0095783_4	UniRef90	UniRef90_A0A625CCT9	DNA helicase	NA
UHGV-0095783_4	eggNOG-mapper	432200.K7P7N4_9CAUD	DNA helicase activity	NA
UHGV-0095783_4	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0095783_4	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0095783_4	NCBIFam	TIGR03600.1	phage replicative helicase, DnaB family	NA
UHGV-0095783_4	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0095783_5	PHROG	phrog_5907	NA	unknown function
UHGV-0095783_5	UniRef90	UniRef90_Q1R927	Bacteriophage HK97 gp56	NA
UHGV-0095783_6	PHROG	phrog_6308	NA	unknown function
UHGV-0095783_7	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0095783_7	UniRef90	UniRef90_P03765	Protein ninB	NA
UHGV-0095783_7	eggNOG-mapper	199310.c1554	NinB protein	NA
UHGV-0095783_7	Pfam	PF05772	NinB protein	NinB
UHGV-0095783_7	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0095783_8	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0095783_8	UniRef90	UniRef90_A0A086UID1	DNA N-6-adenine-methyltransferase of bacteriophage	NA
UHGV-0095783_8	eggNOG-mapper	1524881.A0A088CQ83_9CAUD	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0095783_8	PADLOC	oMTase_00010	orphan methyltransferase	RM
UHGV-0095783_8	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0095783_8	NCBIFam	TIGR01712.1	phage N-6-adenine-methyltransferase	NA
UHGV-0095783_8	Structural annotation	PF05869, MF_01872, TIGR01712, COG4123	NA	NA
UHGV-0095783_9	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0095783_9	UniRef90	UniRef90_P03770	Protein ninG	NA
UHGV-0095783_9	eggNOG-mapper	1147157.K7PHM2_9CAUD	Bacteriophage Lambda NinG protein	NA
UHGV-0095783_9	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0095783_9	Structural annotation	PF05766	NA	NA
UHGV-0095783_10	PHROG	phrog_268	NA	unknown function
UHGV-0095783_10	UniRef90	UniRef90_P03771	Protein ninH	NA
UHGV-0095783_10	eggNOG-mapper	10710.NINH_LAMBD	Phage NinH protein	NA
UHGV-0095783_10	Pfam	PF06322	Phage NinH protein	Phage_NinH
UHGV-0095783_10	Structural annotation	PF06322	NA	NA
UHGV-0095783_11	KOfam	K07314	pphB; serine/threonine protein phosphatase 2 [EC:3.1.3.16]	NA
UHGV-0095783_11	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0095783_11	UniRef90	UniRef90_A0A152CN92	Serine/threonine protein phosphatase	NA
UHGV-0095783_11	eggNOG-mapper	432201.K7P7K6_9CAUD	hydrolase activity	NA
UHGV-0095783_11	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0095783_11	Structural annotation	PF12850, MF_01443, NF007425, COG0622	NA	NA
UHGV-0095783_12	PHROG	phrog_943	anti-termination protein Q-like	transcription regulation
UHGV-0095783_12	UniRef90	UniRef90_Q9XJQ6	Q protein	NA
UHGV-0095783_12	eggNOG-mapper	254397.Q5TJL7_9CAUD	negative regulation of DNA-dependent transcription, termination	NA
UHGV-0095783_12	Pfam	PF06530	Phage antitermination protein Q	Phage_antitermQ
UHGV-0095783_12	Structural annotation	PF06530	NA	NA
UHGV-0095783_13	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-0095783_13	UniRef90	UniRef90_A0A0H0HI80	Holin	NA
UHGV-0095783_13	eggNOG-mapper	469008.B21_00727	Phage holin family (Lysis protein S)	NA
UHGV-0095783_13	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0095783_13	NCBIFam	TIGR01594.1	phage holin, lambda family	NA
UHGV-0095783_13	Structural annotation	PF05106, TIGR01594	NA	NA
UHGV-0095783_14	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0095783_14	PHROG	phrog_7	endolysin	lysis
UHGV-0095783_14	UniRef90	UniRef90_A0A2H9FBT3	Lysozyme	NA
UHGV-0095783_14	eggNOG-mapper	90371.CY43_05255	Phage lysozyme	NA
UHGV-0095783_14	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0095783_14	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0095783_14	HAMAP	MF_04110	Endolysin	NA
UHGV-0095783_14	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0095783_15	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0095783_15	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-0095783_15	UniRef90	UniRef90_A0A7H9NLM0	Lysis protein	NA
UHGV-0095783_15	eggNOG-mapper	754331.AEME01000001_gene3075	Bacteriophage Rz lysis protein	NA
UHGV-0095783_15	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0095783_15	HAMAP	MF_04137	Spanin, inner membrane subunit	NA
UHGV-0095783_15	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-0095783_16	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0095783_16	UniRef90	UniRef90_A0A4T6E062	DNA-binding protein	NA
UHGV-0095783_16	eggNOG-mapper	754331.AEME01000001_gene3076	KilA-N	NA
UHGV-0095783_16	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0095783_16	Pfam	PF10549	ORF11CD3 domain	ORF11CD3
UHGV-0095783_16	Structural annotation	PF10547, TIGR02681, COG3617	NA	NA
UHGV-0095783_17	PHROG	phrog_875	NA	unknown function
UHGV-0095783_17	eggNOG-mapper	754331.AEME01000001_gene3077	NA	NA
UHGV-0095783_17	Structural annotation	PF01608	NA	NA
UHGV-0095783_18	PHROG	phrog_413	head protein	head and packaging
UHGV-0095783_18	UniRef90	UniRef90_A0A5D8QRH3	NA	NA
UHGV-0095783_18	eggNOG-mapper	199310.c1440	phage envelope protein	NA
UHGV-0095783_18	Pfam	PF07166	NA	DUF1398
UHGV-0095783_18	COG	COG5562	NA	NA
UHGV-0095783_18	Structural annotation	PF07166, COG5562	NA	NA
UHGV-0095783_19	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0095783_19	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0095783_19	UniRef90	UniRef90_P03707	Terminase small subunit	NA
UHGV-0095783_19	eggNOG-mapper	481805.EcolC_2090	DNA packaging	NA
UHGV-0095783_19	Pfam	PF07471	Phage DNA packaging protein Nu1	Phage_Nu1
UHGV-0095783_19	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0095783_19	Structural annotation	PF07471, MF_01155, NF033499, COG4220	NA	NA
UHGV-0095783_20	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0095783_20	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0095783_20	UniRef90	UniRef90_A0A0H0RUW0	Phage terminase large subunit	NA
UHGV-0095783_20	eggNOG-mapper	469008.B21_00731	Phage terminase large subunit (GpA)	NA
UHGV-0095783_20	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0095783_20	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0095783_20	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0095783_20	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0095783_20	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0095783_21	PHROG	phrog_75	head-tail adaptor Ad1	connector
UHGV-0095783_21	UniRef90	UniRef90_P68660	Head completion protein	NA
UHGV-0095783_21	eggNOG-mapper	199310.c3172	gpW	NA
UHGV-0095783_21	Pfam	PF02831	gpW	gpW
UHGV-0095783_21	Structural annotation	PF02831	NA	NA
UHGV-0095783_22	PHROG	phrog_21	portal protein	head and packaging
UHGV-0095783_22	UniRef90	UniRef90_J7QEL8	Phage portal protein	NA
UHGV-0095783_22	eggNOG-mapper	502347.ESCAB7627_3659	Phage portal protein, lambda family	NA
UHGV-0095783_22	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0095783_22	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0095783_22	COG	COG5511	Phage capsid protein	NA
UHGV-0095783_22	HAMAP	MF_04135	Portal protein B [B]	NA
UHGV-0095783_22	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0095783_23	KOfam	K21511	GPC; capsid assembly protease [EC:3.4.21.-]	NA
UHGV-0095783_23	PHROG	phrog_53	head maturation protease	head and packaging
UHGV-0095783_23	UniRef90	UniRef90_A0A2H4TLH1	Minor capsid protein C	NA
UHGV-0095783_23	eggNOG-mapper	155864.EDL933_1829	Peptidase family S49	NA
UHGV-0095783_23	Pfam	PF01343	Peptidase family S49	Peptidase_S49
UHGV-0095783_23	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-0095783_23	Structural annotation	PF01343, PF01740, MF_00444, TIGR00706, COG0616	NA	NA
UHGV-0095783_24	PHROG	phrog_49	head decoration	head and packaging
UHGV-0095783_24	UniRef90	UniRef90_A0A376S921	Head decoration protein from bacteriophage origin	NA
UHGV-0095783_24	eggNOG-mapper	199310.c3169	Bacteriophage lambda head decoration protein D	NA
UHGV-0095783_24	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-0095783_24	Structural annotation	PF02924, COG5471	NA	NA
UHGV-0095783_25	PHROG	phrog_6020	major head protein	head and packaging
UHGV-0095783_25	UniRef90	UniRef90_P03713	Major capsid protein	NA
UHGV-0095783_25	eggNOG-mapper	155864.EDL933_1831	Phage major capsid protein E	NA
UHGV-0095783_25	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0095783_25	HAMAP	MF_04133	Major capsid protein [E]	NA
UHGV-0095783_25	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0095783_26	PHROG	phrog_92	DNA packaging chaperone FI	head and packaging
UHGV-0095783_26	UniRef90	UniRef90_A0A376Q6T1	DNA packaging protein from bacteriophage origin	NA
UHGV-0095783_26	eggNOG-mapper	362663.ECP_1173	DNA packaging protein FI	NA
UHGV-0095783_26	Pfam	PF14000	DNA packaging protein FI	Packaging_FI
UHGV-0095783_26	Structural annotation	PF14000	NA	NA
UHGV-0095783_27	PHROG	phrog_82	head closure Hc1	connector
UHGV-0095783_27	UniRef90	UniRef90_A0A037Y2B4	Head-tail joining protein	NA
UHGV-0095783_27	eggNOG-mapper	502347.ESCAB7627_3654	head-tail joining protein of prophage	NA
UHGV-0095783_27	Pfam	PF05354	Phage Head-Tail Attachment	Phage_attach
UHGV-0095783_27	Structural annotation	PF05354, COG5614	NA	NA
UHGV-0095783_28	PHROG	phrog_8274	NA	unknown function
UHGV-0095783_28	UniRef90	UniRef90_P03731	Tail completion protein Z	NA
UHGV-0095783_28	eggNOG-mapper	1116472.MGMO_198c00030	tail protein	NA
UHGV-0095783_28	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0095783_28	Structural annotation	PF06763	NA	NA
UHGV-0095783_29	PHROG	phrog_37	tail terminator	connector
UHGV-0095783_29	UniRef90	UniRef90_P03732	Tail tube terminator protein	NA
UHGV-0095783_29	eggNOG-mapper	1116472.MGMO_198c00020	Phage minor tail protein U	NA
UHGV-0095783_29	Pfam	PF06141	Phage minor tail protein U	Phage_tail_U
UHGV-0095783_29	Structural annotation	PF06141, COG5003	NA	NA
UHGV-0095783_30	PHROG	phrog_41	major tail protein	tail
UHGV-0095783_30	UniRef90	UniRef90_P03733	Tail tube protein	NA
UHGV-0095783_30	eggNOG-mapper	1116472.MGMO_198c00010	Lambda phage tail tube protein, TTP	NA
UHGV-0095783_30	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0095783_30	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0095783_30	COG	COG5492	NA	NA
UHGV-0095783_30	Structural annotation	PF02368, PF06199, MF_04116, TIGR02126, TIGR04225, COG5437	NA	NA
UHGV-0095783_31	PHROG	phrog_11732	NA	unknown function
UHGV-0095783_31	UniRef90	UniRef90_P03734	Tail assembly protein G	NA
UHGV-0095783_31	eggNOG-mapper	469008.B21_00743	tail component of prophage	NA
UHGV-0095783_31	Pfam	PF06894	Bacteriophage lambda tail assembly chaperone, TAC, protein G	Phage_TAC_2
UHGV-0095783_31	NCBIFam	TIGR01674.1	phage minor tail protein G	NA
UHGV-0095783_31	HAMAP	MF_04134	Tail assembly protein GT	NA
UHGV-0095783_31	Structural annotation	PF06894, MF_04134, TIGR01674	NA	NA
UHGV-0095783_32	PHROG	phrog_32165	minor tail protein	tail
UHGV-0095783_32	UniRef90	UniRef90_F0JV83	Tail component	NA
UHGV-0095783_32	eggNOG-mapper	155864.EDL933_1838	Minor tail protein T	NA
UHGV-0095783_32	Pfam	PF06223	Minor tail protein T	Phage_tail_T
UHGV-0095783_32	NCBIFam	TIGR01715.1	phage tail assembly protein T	NA
UHGV-0095783_32	HAMAP	MF_04134	Tail assembly protein GT	NA
UHGV-0095783_32	Structural annotation	PF06223, TIGR01715	NA	NA
UHGV-0095783_33	PHROG	phrog_24	tail length tape measure protein	tail
UHGV-0095783_33	UniRef90	UniRef90_A0A8B5K0G4	Phage tail tape measure protein	NA
UHGV-0095783_33	eggNOG-mapper	481805.EcolC_2104	Escherichia coli O157 H7 ortholog z2140	NA
UHGV-0095783_33	Pfam	PF06791	Prophage tail length tape measure protein	TMP_2
UHGV-0095783_33	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0095783_33	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0095783_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0095783_33	HAMAP	MF_04138	Tape measure protein [H]	NA
UHGV-0095783_33	Structural annotation	PF06791, MF_04138, COG5281	NA	NA
UHGV-0095783_34	PHROG	phrog_21806	minor tail protein	tail
UHGV-0095783_34	UniRef90	UniRef90_P03737	Tail tip protein M	NA
UHGV-0095783_34	eggNOG-mapper	481805.EcolC_2105	Phage minor tail protein	NA
UHGV-0095783_34	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-0095783_34	COG	COG4718	Phage tail protein	NA
UHGV-0095783_34	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0095783_35	PHROG	phrog_2732	NA	unknown function
UHGV-0095783_35	UniRef90	UniRef90_A0A5E9ZQ54	Phage tail protein (Fragment)	NA
UHGV-0095783_35	eggNOG-mapper	155864.EDL933_1841	Phage minor tail protein L	NA
UHGV-0095783_35	COG	COG4672	Phage tail protein	NA