UHGV-0095886

Genome information

Genome length 60,940 bps

CDS count 100

Completeness 73.58% (medium-quality)

geNomad score 0.9523

Prediction confidence Confident

Genome information
Genome ID	UHGV-0095886
vOTU ID	vOTU-017939
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_230748
BioSample	SAMEA3708648
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	73.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9523
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.07
Jumbo phage	No

Genome content
Genome length	60,940 bps
GC content	31.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	100
CDS density	90.00%
Average CDS length	554.64 bps
tRNA count	17
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0095886_2	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0095886_2	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0095886_2	UniRef90	UniRef90_A0A3A9BEG1	Methyltransferase	NA
UHGV-0095886_2	eggNOG-mapper	742740.HMPREF9474_02900	DNA methylase	NA
UHGV-0095886_2	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0095886_2	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0095886_2	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0095886_2	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0095886_6	PHROG	phrog_315	endolysin	lysis
UHGV-0095886_6	UniRef90	UniRef90_A0A7G8ZLD7	Glycoside hydrolase family 108 protein	NA
UHGV-0095886_6	eggNOG-mapper	570967.JMLV01000007_gene927	Glycosyl hydrolase 108	NA
UHGV-0095886_6	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0095886_6	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0095886_6	COG	COG3926	Lysozyme family protein	NA
UHGV-0095886_6	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-0095886_11	COG	COG3656	Predicted periplasmic protein	NA
UHGV-0095886_11	Structural annotation	PF07603, TIGR02145	NA	NA
UHGV-0095886_12	KOfam	K00974	cca; tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-]	NA
UHGV-0095886_12	PHROG	phrog_2244	tRNA nucleotidyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0095886_12	UniRef90	UniRef90_A0A1Q6UAT0	HD domain-containing protein	NA
UHGV-0095886_12	eggNOG-mapper	862965.PARA_14110	Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'- nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases	NA
UHGV-0095886_12	Pfam	PF01743	Poly A polymerase head domain	PolyA_pol
UHGV-0095886_12	Pfam	PF12627	Probable RNA and SrmB- binding site of polymerase A	PolyA_pol_RNAbd
UHGV-0095886_12	Pfam	PF01966	HD domain	HD
UHGV-0095886_12	NCBIFam	TIGR00277.1	HDIG domain-containing protein	NA
UHGV-0095886_12	COG	COG0617	tRNA nucleotidyltransferase/poly(A) polymerase	NA
UHGV-0095886_12	Structural annotation	PF01743, PF12627, MF_01261, NF008137, COG0617	NA	NA
UHGV-0095886_13	UniRef90	UniRef90_UPI001EF41F57	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0095886_13	eggNOG-mapper	1122963.AUHB01000014_gene4304	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0095886_13	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0095886_13	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0095886_15	PHROG	phrog_19868	NA	unknown function
UHGV-0095886_15	UniRef90	UniRef90_A0A2N2SYX1	MFS transporter	NA
UHGV-0095886_15	eggNOG-mapper	266265.Bxe_A0367	NA	NA
UHGV-0095886_16	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0095886_16	PHROG	phrog_4840	NA	unknown function
UHGV-0095886_16	UniRef90	UniRef90_UPI000C85530F	DEAD/DEAH box helicase family protein	NA
UHGV-0095886_16	eggNOG-mapper	1137281.D778_02384	helicase	NA
UHGV-0095886_16	PADLOC	REase_MTase_IIG_00002	Type IIG restriction enzyme-methyltransferase	RM
UHGV-0095886_16	Pfam	PF19905	NA	DUF6378
UHGV-0095886_16	Pfam	PF18135	Type ISP C-terminal specificity domain	Type_ISP_C
UHGV-0095886_16	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0095886_19	PHROG	phrog_4212	NA	unknown function
UHGV-0095886_19	UniRef90	UniRef90_R5YA98	UPF0335 protein AZOLI_p40624	NA
UHGV-0095886_19	eggNOG-mapper	1121033.AUCF01000027_gene2804	NA	NA
UHGV-0095886_19	Pfam	PF10073	GapR-like, DNA-binding domain	GapR_DNA-bd
UHGV-0095886_19	COG	COG3750	NA	NA
UHGV-0095886_20	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0095886_20	eggNOG-mapper	397290.C810_05173	NA	NA
UHGV-0095886_24	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0095886_24	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0095886_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0095886_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0095886_25	UniRef90	UniRef90_R6J5K6	Single-stranded DNA-binding protein	NA
UHGV-0095886_25	eggNOG-mapper	1279038.KB907337_gene268	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0095886_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0095886_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0095886_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0095886_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0095886_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0095886_27	KOfam	K07501	K07501; 3'-5' exonuclease	NA
UHGV-0095886_27	PHROG	phrog_403	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0095886_27	UniRef90	UniRef90_A0A354U999	DNA_pol_B_exo2 domain-containing protein	NA
UHGV-0095886_27	eggNOG-mapper	306263.Cla_1248	3'-5' exonuclease related to the exonuclease domain of PolB	NA
UHGV-0095886_27	Pfam	PF10108	Predicted 3'-5' exonuclease related to the exonuclease domain of PolB	DNA_pol_B_exo2
UHGV-0095886_27	COG	COG3298	Predicted 3'-5' exonuclease related to the exonuclease domain of PolB	NA
UHGV-0095886_27	Structural annotation	PF13482, MF_00157, NF005838, COG3359	NA	NA
UHGV-0095886_28	PHROG	phrog_14970	NA	unknown function
UHGV-0095886_28	UniRef90	UniRef90_A0A1C5NV07	DNA damage response protein A	NA
UHGV-0095886_28	eggNOG-mapper	657309.BXY_08760	double-strand break repair protein	NA
UHGV-0095886_28	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0095886_28	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0095886_28	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0095886_29	PHROG	phrog_25176	NA	unknown function
UHGV-0095886_29	eggNOG-mapper	1450525.JATV01000019_gene2409	NA	NA
UHGV-0095886_32	eggNOG-mapper	1095747.HMPREF1049_2016	NA	NA
UHGV-0095886_32	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0095886_35	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0095886_35	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0095886_35	UniRef90	UniRef90_B1J5L2	IstB domain protein ATP-binding protein	NA
UHGV-0095886_35	eggNOG-mapper	390235.PputW619_1319	DNA replication protein	NA
UHGV-0095886_35	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0095886_35	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0095886_35	Structural annotation	PF01695, MF_01158, NF005992, COG1484	NA	NA
UHGV-0095886_36	Structural annotation	PF02002, MF_01909, TIGR01610, COG1675	NA	NA
UHGV-0095886_40	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0095886_40	UniRef90	UniRef90_A0A3Q9R5L1	Sugar-phospahte nucleotidyltransferase	NA
UHGV-0095886_40	eggNOG-mapper	407392.A0MN47_9CAUD	methyltransferase activity	NA
UHGV-0095886_40	Structural annotation	PF13651, MF_00607, NF000077, COG0286	NA	NA
UHGV-0095886_43	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0095886_43	UniRef90	UniRef90_A0A7W1QHU3	Nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0095886_43	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0095886_43	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0095886_43	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0095886_49	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0095886_49	UniRef90	UniRef90_A0A8F0WBX1	Putative HNH endonuclease	NA
UHGV-0095886_49	eggNOG-mapper	1527693.A0A096XV21_9CAUD	HNH endonuclease	NA
UHGV-0095886_49	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0095886_49	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0095886_49	Structural annotation	PF07463, PF12286	NA	NA
UHGV-0095886_50	PHROG	phrog_850	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0095886_50	UniRef90	UniRef90_UPI0018C6CA2A	NA	NA
UHGV-0095886_50	eggNOG-mapper	521460.Athe_2404	NA	NA
UHGV-0095886_50	Pfam	PF11443	NA	DUF2828
UHGV-0095886_50	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA
UHGV-0095886_50	Structural annotation	PF11443, MF_01340, COG2304	NA	NA
UHGV-0095886_51	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0095886_51	Pfam	PF00075	RNase H	RNase_H
UHGV-0095886_51	Structural annotation	PF00075, MF_00042, NF041306, COG0328	NA	NA
UHGV-0095886_53	KOfam	K11493	RCC1; regulator of chromosome condensation	NA
UHGV-0095886_53	PHROG	phrog_7220	regulator of chromosome condensation	DNA, RNA and nucleotide metabolism
UHGV-0095886_53	Pfam	PF13540	Regulator of chromosome condensation (RCC1) repeat	RCC1_2
UHGV-0095886_53	Pfam	PF00415	Regulator of chromosome condensation (RCC1) repeat	RCC1
UHGV-0095886_57	eggNOG-mapper	556268.OFAG_01050	tail collar domain protein	NA
UHGV-0095886_57	COG	COG4675	Phage tail collar domain	NA
UHGV-0095886_58	PHROG	phrog_9116	tail protein	tail
UHGV-0095886_58	eggNOG-mapper	1051985.l11_17090	tail collar domain protein	NA
UHGV-0095886_58	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0095886_58	COG	COG4675	Phage tail collar domain	NA
UHGV-0095886_62	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0095886_62	UniRef90	UniRef90_A0A0A8K5V0	Phage-related protein, tail component	NA
UHGV-0095886_62	eggNOG-mapper	1125863.JAFN01000001_gene3562	Phage-related protein, tail	NA
UHGV-0095886_62	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0095886_62	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0095886_62	Structural annotation	PF13550, PF14109, PF00041, PF03658, MF_00460, NF040662, TIGR01683, COG4733	NA	NA
UHGV-0095886_63	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0095886_63	PHROG	phrog_329	minor tail protein	tail
UHGV-0095886_63	UniRef90	UniRef90_A0A6I0E4U1	NlpC/P60 family protein	NA
UHGV-0095886_63	eggNOG-mapper	926692.AZYG01000046_gene1824	NlpC/P60 family	NA
UHGV-0095886_63	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0095886_63	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0095886_64	PHROG	phrog_396	minor tail protein	tail
UHGV-0095886_64	UniRef90	UniRef90_A0A651FCL5	NA	NA
UHGV-0095886_64	eggNOG-mapper	1449351.RISW2_18805	NA	NA
UHGV-0095886_64	Pfam	PF08875	NA	DUF1833
UHGV-0095886_64	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0095886_65	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0095886_65	eggNOG-mapper	1125863.JAFN01000001_gene3559	NA	NA
UHGV-0095886_66	PHROG	phrog_3336	tail length tape measure protein	tail
UHGV-0095886_66	UniRef90	UniRef90_UPI0008488BFD	tape measure protein	NA
UHGV-0095886_66	eggNOG-mapper	292414.TM1040_0819	sister chromatid segregation	NA
UHGV-0095886_66	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0095886_66	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0095886_66	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0095886_66	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0095886_67	PHROG	phrog_3817	tail chaperonin	tail
UHGV-0095886_67	eggNOG-mapper	1458669.W6B0V4_9CAUD	NA	NA
UHGV-0095886_68	PHROG	phrog_8233	tail assembly chaperone	tail
UHGV-0095886_68	UniRef90	UniRef90_A0A2D0W968	Putative structural protein	NA
UHGV-0095886_68	eggNOG-mapper	462590.A9J4W8_BPPYU	NA	NA
UHGV-0095886_68	Structural annotation	PF08748	NA	NA
UHGV-0095886_69	PHROG	phrog_290	minor tail protein	tail
UHGV-0095886_69	UniRef90	UniRef90_UPI001BCF3B82	phage tail tube protein	NA
UHGV-0095886_69	eggNOG-mapper	1038858.AXBA01000002_gene3705	NA	NA
UHGV-0095886_69	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0095886_69	Structural annotation	PF18906, TIGR02126, COG5437	NA	NA
UHGV-0095886_70	PHROG	phrog_179	tail terminator	connector
UHGV-0095886_70	eggNOG-mapper	562742.F4YXT8_9CAUD	NA	NA
UHGV-0095886_71	PHROG	phrog_169	tail completion or Neck1 protein	connector
UHGV-0095886_71	UniRef90	UniRef90_A0A1P8VVH7	Virion structural protein	NA
UHGV-0095886_71	eggNOG-mapper	562742.F4YXT7_9CAUD	NA	NA
UHGV-0095886_73	PHROG	phrog_1732	NA	unknown function
UHGV-0095886_75	PHROG	phrog_29	major head protein	head and packaging
UHGV-0095886_75	UniRef90	UniRef90_UPI0018984555	major capsid protein	NA
UHGV-0095886_75	eggNOG-mapper	999541.bgla_1g27380	Phage major capsid protein E	NA
UHGV-0095886_75	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0095886_75	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0095886_76	eggNOG-mapper	266809.PM03_15175	Bacteriophage lambda head decoration protein D	NA
UHGV-0095886_76	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-0095886_78	PHROG	phrog_1530	DNA methyltransferase	other
UHGV-0095886_78	UniRef90	UniRef90_A0A7J3BC00	Peptidase_S78_2 domain-containing protein	NA
UHGV-0095886_78	eggNOG-mapper	1200557.JHWV01000006_gene1728	Putative phage serine protease XkdF	NA
UHGV-0095886_78	Pfam	PF14550	Putative phage serine protease XkdF	Peptidase_S78_2
UHGV-0095886_78	Structural annotation	PF14550	NA	NA
UHGV-0095886_79	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0095886_79	UniRef90	UniRef90_A0A411BK47	Prohead assembly protein	NA
UHGV-0095886_79	eggNOG-mapper	1113547.A0A060DBD5_9CAUD	extracellular region	NA
UHGV-0095886_79	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0095886_79	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0095886_80	PHROG	phrog_113	portal protein	head and packaging
UHGV-0095886_80	UniRef90	UniRef90_UPI001F3F07C0	NA	NA
UHGV-0095886_80	eggNOG-mapper	457412.RSAG_01145	Mu-like prophage protein gp29	NA
UHGV-0095886_80	COG	COG4383	NA	NA
UHGV-0095886_80	Structural annotation	PF06074, MF_04135, TIGR01537, COG4383	NA	NA
UHGV-0095886_81	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0095886_81	UniRef90	UniRef90_A0A482MDA8	Terminase	NA
UHGV-0095886_81	eggNOG-mapper	570967.JMLV01000007_gene947	Terminase RNaseH-like domain	NA
UHGV-0095886_81	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0095886_81	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0095886_81	COG	COG5362	Phage terminase large subunit	NA
UHGV-0095886_81	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0095886_84	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0095886_84	PHROG	phrog_938	endolysin	lysis
UHGV-0095886_84	UniRef90	UniRef90_UPI001C4A5F0A	cell wall hydrolase	NA
UHGV-0095886_84	eggNOG-mapper	744980.TRICHSKD4_0176	Cell wall hydrolyses involved in spore germination	NA
UHGV-0095886_84	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0095886_84	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0095886_87	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-0095886_90	KOfam	K09952	csn1, cas9; CRISPR-associated endonuclease Csn1 [EC:3.1.-.-]	NA
UHGV-0095886_90	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0095886_90	UniRef90	UniRef90_A0A7C1QKD2	HNHc domain-containing protein	NA
UHGV-0095886_90	eggNOG-mapper	1174528.JH992892_gene6489	endonuclease activity	NA
UHGV-0095886_90	PADLOC	cas_Csn1	CRISPR subtype II RNA-guided endonuclease Cas9	CRISPR-CAS
UHGV-0095886_90	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0095886_90	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA