UHGV-0095967

Genome information

Genome length 59,549 bps

CDS count 68

Completeness 95.28% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0095967
vOTU ID	vOTU-061705
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_227698
BioSample	SAMEA3708504
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.28% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.89
Jumbo phage	No

Genome content
Genome length	59,549 bps
GC content	49.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	89.79%
Average CDS length	788.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0095967_1	PHROG	phrog_10691	NA	unknown function
UHGV-0095967_1	UniRef90	UniRef90_UPI0014728F49	transglycosylase SLT domain-containing protein	NA
UHGV-0095967_1	eggNOG-mapper	1232428.CAVO010000067_gene414	Type III restriction enzyme, res subunit	NA
UHGV-0095967_1	PADLOC	PbeA_00005	PbeA	PBE
UHGV-0095967_1	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0095967_1	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0095967_1	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0095967_1	Pfam	PF13871	C-terminal domain on Strawberry notch homologue	Helicase_C_4
UHGV-0095967_1	Pfam	PF05175	Methyltransferase small domain	MTS
UHGV-0095967_1	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0095967_1	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0095967_3	UniRef90	UniRef90_UPI00047F33D6	Hint domain-containing protein	NA
UHGV-0095967_3	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-0095967_3	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-0095967_3	Structural annotation	PF01079, NF038136	NA	NA
UHGV-0095967_4	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-0095967_5	eggNOG-mapper	883156.HMPREF9282_00569	NA	NA
UHGV-0095967_5	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-0095967_6	UniRef90	UniRef90_S7HTA2	TarH domain-containing protein	NA
UHGV-0095967_7	PHROG	phrog_34863	NA	unknown function
UHGV-0095967_7	UniRef90	UniRef90_UPI001D017339	chitosanase	NA
UHGV-0095967_7	eggNOG-mapper	1273103.NM10_00929	LysM domain	NA
UHGV-0095967_7	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-0095967_7	COG	COG1388	LysM repeat	NA
UHGV-0095967_7	Structural annotation	PF21277	NA	NA
UHGV-0095967_8	PHROG	phrog_28789	NA	unknown function
UHGV-0095967_8	UniRef90	UniRef90_R7MZN4	Conserved domain protein	NA
UHGV-0095967_8	eggNOG-mapper	1273103.NM10_00934	NA	NA
UHGV-0095967_10	KOfam	K14059	int; integrase	NA
UHGV-0095967_10	PHROG	phrog_1	integrase	integration and excision
UHGV-0095967_10	UniRef90	UniRef90_UPI0004143D65	tyrosine-type recombinase/integrase	NA
UHGV-0095967_10	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-0095967_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0095967_10	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0095967_10	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0095967_11	PHROG	phrog_5717	tail protein	tail
UHGV-0095967_11	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-0095967_11	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0095967_11	COG	COG4675	Phage tail collar domain	NA
UHGV-0095967_12	eggNOG-mapper	1232428.CAVO010000067_gene418	NA	NA
UHGV-0095967_12	Structural annotation	PF14301	NA	NA
UHGV-0095967_14	PHROG	phrog_5717	tail protein	tail
UHGV-0095967_14	UniRef90	UniRef90_UPI0008EFFA34	phage tail protein	NA
UHGV-0095967_14	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-0095967_14	COG	COG4675	Phage tail collar domain	NA
UHGV-0095967_15	eggNOG-mapper	1150626.PHAMO_80093	extracellular polysaccharide biosynthetic process	NA
UHGV-0095967_15	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0095967_16	PHROG	phrog_5417	NA	unknown function
UHGV-0095967_16	UniRef90	UniRef90_H8FY63	Putative BcepGomrgp18	NA
UHGV-0095967_16	eggNOG-mapper	1589747.A0A0B5A4F6_9CAUD	NA	NA
UHGV-0095967_16	Structural annotation	PF12571	NA	NA
UHGV-0095967_17	eggNOG-mapper	1232428.CAVO010000067_gene421	cellulase activity	NA
UHGV-0095967_17	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0095967_17	Structural annotation	PF18001, PF01828, PF16389, MF_01905, NF010681, COG3401, COG3506	NA	NA
UHGV-0095967_18	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-0095967_18	Structural annotation	PF20387	NA	NA
UHGV-0095967_19	Structural annotation	PF20387	NA	NA
UHGV-0095967_21	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0095967_21	UniRef90	UniRef90_UPI000413677B	NA	NA
UHGV-0095967_21	eggNOG-mapper	1232428.CAVO010000067_gene423	NA	NA
UHGV-0095967_21	Pfam	PF17236	NA	DUF5309
UHGV-0095967_21	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-0095967_22	eggNOG-mapper	1232428.CAVO010000067_gene424	NA	NA
UHGV-0095967_24	PHROG	phrog_1216	portal protein	head and packaging
UHGV-0095967_24	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-0095967_24	eggNOG-mapper	1232428.CAVO010000067_gene425	Membrane	NA
UHGV-0095967_24	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0095967_24	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0095967_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0095967_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0095967_25	UniRef90	UniRef90_A0A1F8V9T6	Terminase_3 domain-containing protein	NA
UHGV-0095967_25	eggNOG-mapper	1232428.CAVO010000067_gene427	DNA packaging	NA
UHGV-0095967_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0095967_25	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0095967_26	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0095967_26	UniRef90	UniRef90_A0A2S0M9J8	Transposase	NA
UHGV-0095967_26	eggNOG-mapper	1007096.BAGW01000022_gene2658	transposase activity	NA
UHGV-0095967_26	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0095967_26	Structural annotation	PF07141	NA	NA
UHGV-0095967_27	Structural annotation	PF07867	NA	NA
UHGV-0095967_28	PHROG	phrog_33485	NA	unknown function
UHGV-0095967_28	AcrCatalog	cluster_185021	NA	NA
UHGV-0095967_29	Structural annotation	PF20075, TIGR02612	NA	NA
UHGV-0095967_30	eggNOG-mapper	1064535.MELS_1121	nuclear chromosome segregation	NA
UHGV-0095967_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0095967_32	PHROG	phrog_16123	NA	unknown function
UHGV-0095967_32	eggNOG-mapper	1273103.NM10_00919	NA	NA
UHGV-0095967_33	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0095967_33	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0095967_34	KOfam	K01493	comEB; dCMP deaminase [EC:3.5.4.12]	NA
UHGV-0095967_34	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0095967_34	UniRef90	UniRef90_UPI00197DB886	dCMP deaminase family protein	NA
UHGV-0095967_34	eggNOG-mapper	1007096.BAGW01000013_gene2399	MafB19-like deaminase	NA
UHGV-0095967_34	PADLOC	dCTPase	NA	NA
UHGV-0095967_34	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-0095967_34	COG	COG2131	Deoxycytidylate deaminase	NA
UHGV-0095967_34	Structural annotation	PF00383, TIGR02571, COG2131	NA	NA
UHGV-0095967_38	PHROG	phrog_98	NA	unknown function
UHGV-0095967_38	UniRef90	UniRef90_A0A2S0M9I6	YopX domain-containing protein	NA
UHGV-0095967_38	eggNOG-mapper	186153.Q8SDL6_BPPHD	YopX protein	NA
UHGV-0095967_38	Pfam	PF09643	YopX protein	YopX
UHGV-0095967_38	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0095967_41	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-0095967_41	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0095967_41	UniRef90	UniRef90_A0A2S0M9B9	HU family DNA-binding protein	NA
UHGV-0095967_41	eggNOG-mapper	1173029.JH980292_gene2745	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	NA
UHGV-0095967_41	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-0095967_41	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-0095967_41	Structural annotation	PF00216, MF_00381, NF007945, COG0776	NA	NA
UHGV-0095967_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0095967_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0095967_42	UniRef90	UniRef90_A0A2S0M9E2	Single-stranded DNA-binding protein	NA
UHGV-0095967_42	eggNOG-mapper	1232428.CAVO010000067_gene437	single-stranded DNA binding	NA
UHGV-0095967_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0095967_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0095967_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0095967_42	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0095967_44	PHROG	phrog_1672	NA	unknown function
UHGV-0095967_44	UniRef90	UniRef90_S7HT72	NA	NA
UHGV-0095967_44	eggNOG-mapper	632245.CLP_2710	NA	NA
UHGV-0095967_45	PHROG	phrog_4074	NA	unknown function
UHGV-0095967_45	eggNOG-mapper	1232428.CAVO010000003_gene1016	NA	NA
UHGV-0095967_47	PHROG	phrog_37395	NA	unknown function
UHGV-0095967_49	Structural annotation	PF11417	NA	NA
UHGV-0095967_50	PHROG	phrog_15768	NA	unknown function
UHGV-0095967_50	UniRef90	UniRef90_A0A2S0M9A1	Helix-turn-helix domain-containing protein	NA
UHGV-0095967_50	eggNOG-mapper	1232428.CAVO010000067_gene439	NA	NA
UHGV-0095967_50	Structural annotation	PF13730, MF_01819, NF038251, COG1846	NA	NA
UHGV-0095967_51	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0095967_51	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0095967_51	UniRef90	UniRef90_UPI001980A387	HNH endonuclease	NA
UHGV-0095967_51	eggNOG-mapper	547559.Nmag_0239	HNH endonuclease	NA
UHGV-0095967_51	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0095967_51	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0095967_51	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0095967_52	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0095967_52	UniRef90	UniRef90_R5BGH3	Conserved domain protein	NA
UHGV-0095967_52	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-0095967_53	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0095967_53	UniRef90	UniRef90_A0A2S0MAE8	ERF superfamily protein	NA
UHGV-0095967_53	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-0095967_53	Pfam	PF04404	ERF superfamily	ERF
UHGV-0095967_53	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0095967_54	PHROG	phrog_674	NA	unknown function
UHGV-0095967_54	UniRef90	UniRef90_A0A2S0M9A8	NA	NA
UHGV-0095967_54	eggNOG-mapper	1280689.AUJC01000003_gene937	NA	NA
UHGV-0095967_54	Pfam	PF07083	NA	DUF1351
UHGV-0095967_56	PHROG	phrog_25045	NA	unknown function
UHGV-0095967_56	UniRef90	UniRef90_A0A2S0M9C6	LysM domain-containing protein	NA
UHGV-0095967_56	eggNOG-mapper	1380354.JIAN01000007_gene84	PFAM Peptidoglycan-binding lysin domain	NA
UHGV-0095967_56	Pfam	PF01476	LysM domain	LysM
UHGV-0095967_56	COG	COG1388	LysM repeat	NA
UHGV-0095967_56	Structural annotation	PF01476, MF_02014, NF010723	NA	NA
UHGV-0095967_57	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0095967_57	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0095967_58	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0095967_58	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0095967_58	UniRef90	UniRef90_UPI00195D1FD8	helix-turn-helix domain-containing protein	NA
UHGV-0095967_58	eggNOG-mapper	1121472.AQWN01000007_gene1036	transcriptional regulator, XRE family	NA
UHGV-0095967_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0095967_58	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0095967_59	PHROG	phrog_518	Rha-like transcriptional regulator	transcription regulation
UHGV-0095967_59	UniRef90	UniRef90_A0A848EVM8	Rha family transcriptional regulator	NA
UHGV-0095967_59	eggNOG-mapper	1273103.NM10_01194	Phage regulatory protein	NA
UHGV-0095967_59	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0095967_59	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0095967_59	COG	COG3617	Prophage antirepressor	NA
UHGV-0095967_59	Structural annotation	PF09669, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0095967_60	UniRef90	UniRef90_A0A0J6WV78	HTH cro/C1-type domain-containing protein	NA
UHGV-0095967_60	eggNOG-mapper	536227.CcarbDRAFT_4274	Helix-turn-helix XRE-family like proteins	NA
UHGV-0095967_60	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0095967_61	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0095967_61	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0095967_61	UniRef90	UniRef90_A0A413QYA9	XRE family transcriptional regulator	NA
UHGV-0095967_61	eggNOG-mapper	1111454.HMPREF1250_0095	Peptidase S24-like	NA
UHGV-0095967_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0095967_61	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0095967_61	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0095967_61	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0095967_64	Structural annotation	PF16747	NA	NA
UHGV-0095967_66	UniRef90	UniRef90_A0A2S0M9F3	Ada_Zn_binding domain-containing protein	NA
UHGV-0095967_66	eggNOG-mapper	1120985.AUMI01000019_gene2262	sequence-specific DNA binding	NA
UHGV-0095967_66	Pfam	PF02805	Metal binding domain of Ada	Ada_Zn_binding
UHGV-0095967_66	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-0095967_66	Structural annotation	PF02805	NA	NA
UHGV-0095967_68	KOfam	K14059	int; integrase	NA
UHGV-0095967_68	PHROG	phrog_1	integrase	integration and excision
UHGV-0095967_68	UniRef90	UniRef90_A0A2S0M9C1	Site-specific integrase	NA
UHGV-0095967_68	eggNOG-mapper	1232428.CAVO010000003_gene1025	Belongs to the 'phage' integrase family	NA
UHGV-0095967_68	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0095967_68	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0095967_68	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0095967_68	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA