UHGV-0095971

Genome information

Genome length 33,766 bps

CDS count 39

Completeness 63.80% (medium-quality)

geNomad score 0.9711

Prediction confidence Confident

Genome information
Genome ID	UHGV-0095971
vOTU ID	vOTU-036480
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_228339
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9711
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.24
Jumbo phage	No

Genome content
Genome length	33,766 bps
GC content	50.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	91.24%
Average CDS length	792.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0095971_1	UniRef90	UniRef90_A0A3B9Q8H9	NA	NA
UHGV-0095971_2	PHROG	phrog_2712	tail fiber protein	tail
UHGV-0095971_2	UniRef90	UniRef90_UPI0010A68A70	phage tail protein	NA
UHGV-0095971_2	eggNOG-mapper	1232410.KI421421_gene3729	NA	NA
UHGV-0095971_3	PHROG	phrog_2712	tail fiber protein	tail
UHGV-0095971_3	UniRef90	UniRef90_UPI001070D5AF	phage tail protein	NA
UHGV-0095971_4	PHROG	phrog_2398	NA	unknown function
UHGV-0095971_4	eggNOG-mapper	1231190.NA8A_04110	NA	NA
UHGV-0095971_5	PHROG	phrog_2712	tail fiber protein	tail
UHGV-0095971_5	UniRef90	UniRef90_UPI000F7A4C03	phage tail protein	NA
UHGV-0095971_5	eggNOG-mapper	391613.RTM1035_19771	NA	NA
UHGV-0095971_6	PHROG	phrog_17834	NA	unknown function
UHGV-0095971_6	eggNOG-mapper	1470591.BW41_00266	IMG reference gene	NA
UHGV-0095971_10	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0095971_10	UniRef90	UniRef90_UPI00190C72B9	phage tail protein	NA
UHGV-0095971_10	eggNOG-mapper	2754.EH55_06800	cellulase activity	NA
UHGV-0095971_10	Pfam	PF09327	NA	DUF1983
UHGV-0095971_10	COG	COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	NA
UHGV-0095971_10	Structural annotation	PF09327, PF13550, PF16389, PF14879, NF040662, NF038116, COG4733	NA	NA
UHGV-0095971_11	PHROG	phrog_32	tail assembly protein	tail
UHGV-0095971_11	UniRef90	UniRef90_C9M6V9	Bacteriophage lambda tail assembly protein I	NA
UHGV-0095971_11	eggNOG-mapper	2754.EH55_06805	tail assembly	NA
UHGV-0095971_11	Pfam	PF06805	Bacteriophage lambda tail assembly protein I	Lambda_tail_I
UHGV-0095971_11	COG	COG4723	Phage-related protein, tail assembly protein I	NA
UHGV-0095971_11	Structural annotation	PF06805, NF008347, COG4723	NA	NA
UHGV-0095971_12	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-0095971_12	PHROG	phrog_30	minor tail protein	tail
UHGV-0095971_12	UniRef90	UniRef90_A0A073IQB6	NlpC/P60 domain-containing protein	NA
UHGV-0095971_12	eggNOG-mapper	2754.EH55_06810	proteolysis	NA
UHGV-0095971_12	Pfam	PF14464	Prokaryotic homologs of the JAB domain	Prok-JAB
UHGV-0095971_12	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0095971_12	COG	COG1310	Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif	NA
UHGV-0095971_12	Structural annotation	PF14464, PF00877, NF041370, TIGR02219, COG1310, COG0791	NA	NA
UHGV-0095971_13	PHROG	phrog_18	minor tail protein	tail
UHGV-0095971_13	UniRef90	UniRef90_C9M6V7	Phage minor tail protein L	NA
UHGV-0095971_13	eggNOG-mapper	2754.EH55_06815	Phage minor tail protein L	NA
UHGV-0095971_13	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0095971_13	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-0095971_13	COG	COG4672	Phage tail protein	NA
UHGV-0095971_13	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-0095971_14	PHROG	phrog_14	minor tail protein	tail
UHGV-0095971_14	eggNOG-mapper	645512.GCWU000246_00706	Phage minor tail protein	NA
UHGV-0095971_14	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-0095971_14	COG	COG4718	Phage tail protein	NA
UHGV-0095971_14	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0095971_15	PHROG	phrog_27166	tail length tape measure protein	tail
UHGV-0095971_15	UniRef90	UniRef90_A0A7D5S1I0	Phage tail tape measure protein	NA
UHGV-0095971_15	eggNOG-mapper	2754.EH55_06825	tape measure	NA
UHGV-0095971_15	Pfam	PF06791	Prophage tail length tape measure protein	TMP_2
UHGV-0095971_15	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0095971_15	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0095971_16	PHROG	phrog_27590	NA	unknown function
UHGV-0095971_16	UniRef90	UniRef90_A0A011AA56	NA	NA
UHGV-0095971_16	eggNOG-mapper	367737.Abu_0148	NA	NA
UHGV-0095971_16	Pfam	PF14020	NA	DUF4236
UHGV-0095971_18	PHROG	phrog_313	Tail assembly chaperone	tail
UHGV-0095971_18	UniRef90	UniRef90_A0A172PZT6	Putative structural protein	NA
UHGV-0095971_18	Structural annotation	PF08748	NA	NA
UHGV-0095971_19	PHROG	phrog_290	minor tail protein	tail
UHGV-0095971_19	UniRef90	UniRef90_UPI000377FE7D	phage tail tube protein	NA
UHGV-0095971_19	eggNOG-mapper	856793.MICA_551	NA	NA
UHGV-0095971_19	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0095971_19	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0095971_20	PHROG	phrog_179	tail terminator	connector
UHGV-0095971_20	UniRef90	UniRef90_Q52PL6	Possible peptidoglycan binding protein	NA
UHGV-0095971_20	Pfam	PF13554	NA	DUF4128
UHGV-0095971_21	PHROG	phrog_169	tail completion or Neck1 protein	connector
UHGV-0095971_21	UniRef90	UniRef90_UPI001BCF6AA7	HK97 gp10 family phage protein	NA
UHGV-0095971_21	eggNOG-mapper	1211279.S4SIM9_9CAUD	exonuclease activity	NA
UHGV-0095971_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0095971_22	PHROG	phrog_161	head closure Hc1	connector
UHGV-0095971_22	UniRef90	UniRef90_A0A0C1W1L3	Prophage PssSM-02, structural protein	NA
UHGV-0095971_22	eggNOG-mapper	1357279.N018_13295	NA	NA
UHGV-0095971_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0095971_23	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-0095971_23	eggNOG-mapper	1000565.METUNv1_01687	phage protein Ypo2111 SWALL Q8ZEP9 (EMBL AJ414151) (176 aa) fasta scores E() 4.1, 26.94 id in 167 aa	NA
UHGV-0095971_23	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0095971_23	Structural annotation	PF20557	NA	NA
UHGV-0095971_25	PHROG	phrog_247	major head protein	head and packaging
UHGV-0095971_25	UniRef90	UniRef90_UPI001C385014	major capsid protein	NA
UHGV-0095971_25	eggNOG-mapper	1217713.F993_01518	NA	NA
UHGV-0095971_25	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0095971_25	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0095971_26	PHROG	phrog_206	head scaffolding protein	head and packaging
UHGV-0095971_26	UniRef90	UniRef90_A0A1M4V4J5	Phage minor structural protein GP20	NA
UHGV-0095971_26	eggNOG-mapper	1121438.JNJA01000003_gene2889	NA	NA
UHGV-0095971_27	PHROG	phrog_419	NA	unknown function
UHGV-0095971_27	UniRef90	UniRef90_UPI001C614256	PGDYG domain-containing protein	NA
UHGV-0095971_27	eggNOG-mapper	1027273.GZ77_08910	NA	NA
UHGV-0095971_27	Structural annotation	PF14083	NA	NA
UHGV-0095971_28	eggNOG-mapper	1009370.ALO_12391	NA	NA
UHGV-0095971_30	PHROG	phrog_241	head morphogenesis	head and packaging
UHGV-0095971_30	UniRef90	UniRef90_A0A0F5QEX4	Phage_Mu_F domain-containing protein	NA
UHGV-0095971_30	eggNOG-mapper	2754.EH55_11435	cell adhesion	NA
UHGV-0095971_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0095971_30	Pfam	PF21814	NA	DUF6883
UHGV-0095971_30	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0095971_30	COG	COG2369	NA	NA
UHGV-0095971_31	PHROG	phrog_145	portal protein	head and packaging
UHGV-0095971_31	UniRef90	UniRef90_UPI00052F743F	NA	NA
UHGV-0095971_31	eggNOG-mapper	1042209.HK44_020610	NA	NA
UHGV-0095971_31	Pfam	PF13264	NA	DUF4055
UHGV-0095971_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0095971_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0095971_32	PHROG	phrog_10250	NA	unknown function
UHGV-0095971_32	UniRef90	UniRef90_A0A3A9JRV6	PBSX family phage terminase large subunit	NA
UHGV-0095971_32	eggNOG-mapper	1329516.JPST01000014_gene657	Phage terminase, large subunit	NA
UHGV-0095971_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0095971_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0095971_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0095971_32	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0095971_33	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0095971_33	UniRef90	UniRef90_A0A3N0WK81	Terminase	NA
UHGV-0095971_33	eggNOG-mapper	484018.BACPLE_00673	transposase activity	NA
UHGV-0095971_33	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0095971_34	PHROG	phrog_9353	NA	unknown function
UHGV-0095971_34	UniRef90	UniRef90_A0A4P5P3Z7	ParB domain-containing protein	NA
UHGV-0095971_34	eggNOG-mapper	1408428.JNJP01000009_gene1349	chromosome segregation	NA
UHGV-0095971_34	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0095971_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0095971_34	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0095971_35	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0095971_35	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0095971_35	UniRef90	UniRef90_V9H5E6	PAPS_reduct domain-containing protein	NA
UHGV-0095971_35	eggNOG-mapper	641147.HMPREF9021_02236	sulfate reduction	NA
UHGV-0095971_35	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0095971_35	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0095971_35	Structural annotation	PF01507, MF_00345, NF006351, COG0175	NA	NA
UHGV-0095971_36	PHROG	phrog_5783	NA	unknown function
UHGV-0095971_36	UniRef90	UniRef90_R6I8N9	NYN domain-containing protein	NA
UHGV-0095971_36	eggNOG-mapper	1262914.BN533_00810	NYN domain	NA
UHGV-0095971_36	Pfam	PF01936	NYN domain	NYN
UHGV-0095971_36	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0095971_36	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0095971_37	KOfam	K23398	TRIP4; activating signal cointegrator 1	NA
UHGV-0095971_37	PHROG	phrog_3193	NA	unknown function
UHGV-0095971_37	UniRef90	UniRef90_A0A645FDG0	ASCH domain-containing protein	NA
UHGV-0095971_37	eggNOG-mapper	1321773.HMPREF9069_01113	ASCH	NA
UHGV-0095971_37	Pfam	PF04266	ASCH domain	ASCH
UHGV-0095971_37	Structural annotation	COG4933	NA	NA
UHGV-0095971_38	UniRef90	UniRef90_UPI001C11D221	helix-turn-helix transcriptional regulator	NA
UHGV-0095971_38	eggNOG-mapper	498761.HM1_0043	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0095971_38	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA
UHGV-0095971_39	PHROG	phrog_7245	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-0095971_39	UniRef90	UniRef90_UPI0003FB35D4	zincin-like metallopeptidase domain-containing protein	NA
UHGV-0095971_39	eggNOG-mapper	1121422.AUMW01000021_gene1680	NA	NA
UHGV-0095971_39	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-0095971_39	Pfam	PF18818	Zincin-like metallopeptidase	MPTase-PolyVal
UHGV-0095971_39	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0095971_39	Structural annotation	PF18818, PF08401, COG4227	NA	NA