UHGV-0096028

Genome information

Genome length 37,512 bps

CDS count 69

Completeness 89.43% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096028
vOTU ID	vOTU-033990
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_211610
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.4
Jumbo phage	No

Genome content
Genome length	37,512 bps
GC content	53.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	92.91%
Average CDS length	508.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096028_2	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0096028_2	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0096028_3	PHROG	phrog_27610	NA	unknown function
UHGV-0096028_4	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0096028_4	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0096028_4	UniRef90	UniRef90_A0A6N9PX21	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0096028_4	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0096028_4	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0096028_4	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0096028_5	eggNOG-mapper	657322.FPR_23130	NA	NA
UHGV-0096028_6	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0096028_6	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0096028_6	UniRef90	UniRef90_K1R461	DNA-cytosine methyltransferase	NA
UHGV-0096028_6	eggNOG-mapper	665956.HMPREF1032_02671	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0096028_6	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0096028_6	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0096028_6	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0096028_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096028_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0096028_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0096028_10	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0096028_10	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0096028_10	UniRef90	UniRef90_A0A7M2RKZ5	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0096028_10	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0096028_10	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0096028_10	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0096028_10	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0096028_11	PHROG	phrog_9804	NA	unknown function
UHGV-0096028_11	UniRef90	UniRef90_A0A8D9PDS1	Replisome organizer	NA
UHGV-0096028_11	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0096028_11	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0096028_11	Structural annotation	PF11417	NA	NA
UHGV-0096028_12	PHROG	phrog_16304	NA	unknown function
UHGV-0096028_12	UniRef90	UniRef90_UPI001D074B07	NA	NA
UHGV-0096028_12	eggNOG-mapper	445972.ANACOL_01828	NA	NA
UHGV-0096028_12	Pfam	PF19808	NA	DUF6291
UHGV-0096028_12	Structural annotation	PF19808	NA	NA
UHGV-0096028_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0096028_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0096028_13	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0096028_13	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0096028_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0096028_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0096028_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0096028_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0096028_13	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0096028_14	PHROG	phrog_7566	NA	unknown function
UHGV-0096028_14	UniRef90	UniRef90_A0A3A5TWB4	Phosphoenolpyruvate carboxykinase	NA
UHGV-0096028_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0096028_15	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0096028_15	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0096028_15	Structural annotation	PF05772	NA	NA
UHGV-0096028_16	eggNOG-mapper	1041142.ATTP01000043_gene5324	NA	NA
UHGV-0096028_16	Structural annotation	TIGR01913	NA	NA
UHGV-0096028_17	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0096028_17	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0096028_17	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0096028_17	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0096028_17	Structural annotation	PF05565	NA	NA
UHGV-0096028_18	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0096028_19	PHROG	phrog_22529	NA	unknown function
UHGV-0096028_19	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0096028_19	eggNOG-mapper	1304866.K413DRAFT_1950	3D domain protein	NA
UHGV-0096028_19	Pfam	PF06725	3D domain	3D
UHGV-0096028_19	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0096028_19	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0096028_21	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0096028_21	Structural annotation	PF11112, COG3311	NA	NA
UHGV-0096028_22	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0096028_22	UniRef90	UniRef90_A0A3D0M0D9	Rha family transcriptional regulator	NA
UHGV-0096028_22	eggNOG-mapper	1203606.HMPREF1526_00304	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0096028_22	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0096028_22	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0096028_23	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0096028_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0096028_23	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0096028_23	eggNOG-mapper	1203606.HMPREF1526_00248	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0096028_23	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0096028_23	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0096028_23	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0096028_24	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0096028_24	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0096028_24	UniRef90	UniRef90_A0A354V5L4	XRE family transcriptional regulator	NA
UHGV-0096028_24	eggNOG-mapper	1284352.AOIG01000051_gene684	transcriptional	NA
UHGV-0096028_24	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0096028_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0096028_24	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0096028_25	eggNOG-mapper	411902.CLOBOL_02557	NA	NA
UHGV-0096028_26	UniRef90	UniRef90_A7VNR4	HTH cro/C1-type domain-containing protein	NA
UHGV-0096028_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096028_26	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0096028_26	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0096028_27	KOfam	K14059	int; integrase	NA
UHGV-0096028_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0096028_27	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0096028_27	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0096028_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0096028_27	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0096028_27	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0096028_28	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0096028_29	Structural annotation	PF12510	NA	NA
UHGV-0096028_30	PHROG	phrog_20016	NA	unknown function
UHGV-0096028_30	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0096028_30	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0096028_30	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0096028_32	PHROG	phrog_16490	NA	unknown function
UHGV-0096028_32	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0096028_33	PHROG	phrog_22984	NA	unknown function
UHGV-0096028_34	PHROG	phrog_21718	NA	unknown function
UHGV-0096028_34	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0096028_35	PHROG	phrog_3754	NA	unknown function
UHGV-0096028_35	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0096028_38	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0096028_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0096028_38	eggNOG-mapper	1487953.JMKF01000068_gene3274	Helix-turn-helix domain	NA
UHGV-0096028_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096028_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0096028_38	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0096028_39	PHROG	phrog_21357	endolysin	lysis
UHGV-0096028_39	UniRef90	UniRef90_R5SN87	Peptidase C51 domain-containing protein	NA
UHGV-0096028_39	eggNOG-mapper	1007096.BAGW01000017_gene816	CHAP domain	NA
UHGV-0096028_39	Pfam	PF05257	CHAP domain	CHAP
UHGV-0096028_39	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0096028_39	Structural annotation	TIGR02594	NA	NA
UHGV-0096028_40	PHROG	phrog_13256	NA	unknown function
UHGV-0096028_40	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0096028_41	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0096028_41	UniRef90	UniRef90_A0A417J5P5	NA	NA
UHGV-0096028_41	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0096028_41	Pfam	PF14359	NA	DUF4406
UHGV-0096028_41	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0096028_43	PHROG	phrog_937	hemolysin	other
UHGV-0096028_43	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0096028_44	PHROG	phrog_27545	NA	unknown function
UHGV-0096028_44	UniRef90	UniRef90_D1PRE7	Glycosyl hydrolase, family 18 family protein	NA
UHGV-0096028_44	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0096028_44	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0096028_44	Structural annotation	PF16170	NA	NA
UHGV-0096028_48	PHROG	phrog_1419	tail protein	tail
UHGV-0096028_48	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0096028_48	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0096028_50	Structural annotation	PF20942, NF041894, COG5456	NA	NA
UHGV-0096028_51	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0096028_51	Structural annotation	PF14594	NA	NA
UHGV-0096028_52	PHROG	phrog_32308	NA	unknown function
UHGV-0096028_52	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0096028_52	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0096028_52	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0096028_53	PHROG	phrog_1194	NA	unknown function
UHGV-0096028_53	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0096028_53	Pfam	PF20458	NA	DUF6711
UHGV-0096028_53	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0096028_54	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0096028_54	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0096028_54	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0096028_54	COG	COG1511	NA	NA
UHGV-0096028_54	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0096028_55	eggNOG-mapper	397290.C810_05150	NA	NA
UHGV-0096028_55	Pfam	PF11611	NA	DUF4352
UHGV-0096028_56	PHROG	phrog_706	NA	unknown function
UHGV-0096028_56	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0096028_56	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0096028_56	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0096028_56	Structural annotation	PF06854	NA	NA
UHGV-0096028_57	PHROG	phrog_11299	NA	unknown function
UHGV-0096028_57	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0096028_57	Structural annotation	PF10666	NA	NA
UHGV-0096028_58	PHROG	phrog_3099	NA	unknown function
UHGV-0096028_58	eggNOG-mapper	1232443.BAIA02000078_gene23	NA	NA
UHGV-0096028_58	Structural annotation	TIGR02126	NA	NA
UHGV-0096028_59	PHROG	phrog_3266	tail completion	connector
UHGV-0096028_59	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0096028_60	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0096028_60	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0096028_60	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0096028_60	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0096028_60	Structural annotation	PF11114	NA	NA
UHGV-0096028_61	PHROG	phrog_3366	NA	unknown function
UHGV-0096028_61	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0096028_61	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0096028_62	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0096028_62	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-0096028_63	PHROG	phrog_544	major head protein	head and packaging
UHGV-0096028_63	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0096028_63	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0096028_63	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0096028_64	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0096028_64	Structural annotation	PF06810	NA	NA
UHGV-0096028_66	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0096028_66	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0096028_66	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0096028_66	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0096028_66	COG	COG2369	NA	NA
UHGV-0096028_66	Structural annotation	PF06152	NA	NA
UHGV-0096028_67	PHROG	phrog_533	portal protein	head and packaging
UHGV-0096028_67	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0096028_67	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0096028_67	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0096028_67	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0096028_68	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0096028_68	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0096028_68	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0096028_68	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0096028_68	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0096028_68	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0096028_68	COG	COG1783	Phage terminase large subunit	NA
UHGV-0096028_68	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA