UHGV-0096058

Genome information

Genome length 35,125 bps

CDS count 51

Completeness 83.16% (medium-quality)

geNomad score 0.9625

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096058
vOTU ID	vOTU-017228
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_208484
BioSample	SAMEA3449267
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9625
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.85
Jumbo phage	No

Genome content
Genome length	35,125 bps
GC content	50.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.46%
Average CDS length	645.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096058_1	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0096058_1	UniRef90	UniRef90_A0A1V5UVH6	RNA polymerase sigma factor	NA
UHGV-0096058_1	eggNOG-mapper	313628.LNTAR_10171	DNA-templated transcription, initiation	NA
UHGV-0096058_1	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0096058_1	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0096058_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0096058_5	PHROG	phrog_19280	NA	unknown function
UHGV-0096058_5	UniRef90	UniRef90_A0A354U410	NA	NA
UHGV-0096058_5	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0096058_5	Pfam	PF19789	NA	DUF6273
UHGV-0096058_6	PHROG	phrog_1158	tail assembly chaperone	tail
UHGV-0096058_6	UniRef90	UniRef90_A0A848AZZ1	NA	NA
UHGV-0096058_6	eggNOG-mapper	457405.FSDG_00681	NA	NA
UHGV-0096058_6	Pfam	PF07087	NA	DUF1353
UHGV-0096058_6	Structural annotation	PF07087	NA	NA
UHGV-0096058_7	eggNOG-mapper	1144313.PMI10_03593	Glycosyl hydrolases family 43	NA
UHGV-0096058_7	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-0096058_7	COG	COG3507	Beta-xylosidase	NA
UHGV-0096058_13	PHROG	phrog_9483	tail length tape measure protein	tail
UHGV-0096058_13	eggNOG-mapper	292414.TM1040_1281	phage tail tape measure protein	NA
UHGV-0096058_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0096058_14	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0096058_14	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0096058_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0096058_18	UniRef90	UniRef90_UPI001E3F26B2	HK97 gp10 family phage protein	NA
UHGV-0096058_18	eggNOG-mapper	1207055.C100_15015	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0096058_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0096058_18	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0096058_19	PHROG	phrog_25	head closure Hc1	connector
UHGV-0096058_19	UniRef90	UniRef90_A0A349HQG0	Head-tail adaptor protein	NA
UHGV-0096058_19	eggNOG-mapper	1278971.AOGF01000017_gene688	Phage head-tail joining protein	NA
UHGV-0096058_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0096058_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0096058_19	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0096058_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0096058_20	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0096058_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0096058_20	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0096058_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0096058_22	UniRef90	UniRef90_UPI00105D83B5	phage major capsid protein	NA
UHGV-0096058_22	eggNOG-mapper	272942.RCAP_rcc01687	TIGRFAM phage major capsid protein, HK97 family	NA
UHGV-0096058_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0096058_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0096058_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0096058_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0096058_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0096058_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0096058_23	UniRef90	UniRef90_UPI001CDCEAD8	Clp protease ClpP	NA
UHGV-0096058_23	eggNOG-mapper	1197719.A464_2019	Belongs to the peptidase S14 family	NA
UHGV-0096058_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0096058_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0096058_23	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0096058_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0096058_24	UniRef90	UniRef90_A0A853I6J3	Phage portal protein	NA
UHGV-0096058_24	eggNOG-mapper	1408303.JNJJ01000031_gene752	portal protein	NA
UHGV-0096058_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0096058_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0096058_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0096058_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0096058_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0096058_25	UniRef90	UniRef90_A0A7Y4R7D9	Terminase large subunit	NA
UHGV-0096058_25	eggNOG-mapper	645512.GCWU000246_00694	Phage Terminase	NA
UHGV-0096058_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0096058_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0096058_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0096058_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0096058_29	KOfam	K23398	TRIP4; activating signal cointegrator 1	NA
UHGV-0096058_29	PHROG	phrog_3193	NA	unknown function
UHGV-0096058_29	UniRef90	UniRef90_A0A3B9P9V7	ASCH domain-containing protein	NA
UHGV-0096058_29	eggNOG-mapper	485913.Krac_3582	NA	NA
UHGV-0096058_29	COG	COG5483	NA	NA
UHGV-0096058_29	Structural annotation	PF12961, MF_00771, NF002615, COG2028	NA	NA
UHGV-0096058_30	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0096058_30	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0096058_30	UniRef90	UniRef90_E5Y9R3	dUTP diphosphatase	NA
UHGV-0096058_30	eggNOG-mapper	563192.HMPREF0179_02931	dUTPase	NA
UHGV-0096058_30	Pfam	PF00692	dUTPase	dUTPase
UHGV-0096058_30	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0096058_30	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0096058_30	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0096058_33	PHROG	phrog_1273	NA	unknown function
UHGV-0096058_36	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0096058_36	UniRef90	UniRef90_A0A7V0GUH9	Class I SAM-dependent methyltransferase	NA
UHGV-0096058_36	eggNOG-mapper	40521.Q9T170_BPA18	methyltransferase activity	NA
UHGV-0096058_36	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0096058_36	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0096058_36	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0096058_37	PHROG	phrog_7713	NA	unknown function
UHGV-0096058_37	eggNOG-mapper	665942.HMPREF1022_00121	Pentapeptide repeats (8 copies)	NA
UHGV-0096058_37	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0096058_37	COG	COG1357	NA	NA
UHGV-0096058_38	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0096058_39	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0096058_39	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0096058_39	UniRef90	UniRef90_UPI001F1610F7	replication protein	NA
UHGV-0096058_39	eggNOG-mapper	1121012.AUKX01000038_gene3752	DNA-dependent DNA replication	NA
UHGV-0096058_39	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0096058_39	Structural annotation	PF01695, MF_01509, NF005304, COG1485	NA	NA
UHGV-0096058_40	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0096058_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0096058_40	Structural annotation	PF09681, TIGR01714, COG1846	NA	NA
UHGV-0096058_42	eggNOG-mapper	929704.Myrod_0663	NA	NA
UHGV-0096058_50	PHROG	phrog_1847	NA	unknown function
UHGV-0096058_50	UniRef90	UniRef90_A0A3A8NKL2	NA	NA
UHGV-0096058_50	eggNOG-mapper	1121007.AUML01000028_gene2133	NA	NA
UHGV-0096058_50	Pfam	PF13250	NA	DUF4041
UHGV-0096058_50	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0096058_50	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0096058_50	Structural annotation	PF13250, PF19824, MF_01506	NA	NA
UHGV-0096058_51	KOfam	K14059	int; integrase	NA
UHGV-0096058_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0096058_51	UniRef90	UniRef90_A0A7X7RMI8	Tyrosine-type recombinase/integrase	NA
UHGV-0096058_51	eggNOG-mapper	313628.LNTAR_01892	DNA integration	NA
UHGV-0096058_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0096058_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA