UHGV-0096066

Genome information

Genome length 25,120 bps

CDS count 25

Completeness 62.50% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096066
vOTU ID	vOTU-033975
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_208457
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.79
Jumbo phage	No

Genome content
Genome length	25,120 bps
GC content	36.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	92.14%
Average CDS length	930.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096066_1	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0096066_1	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0096066_1	UniRef90	UniRef90_A0A366KJ58	Terminase	NA
UHGV-0096066_1	eggNOG-mapper	257314.LJ_0307	Terminase small subunit	NA
UHGV-0096066_1	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0096066_1	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0096066_1	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0096066_1	Structural annotation	PF03592, PF06056, COG3728	NA	NA
UHGV-0096066_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0096066_2	PHROG	phrog_10250	NA	unknown function
UHGV-0096066_2	UniRef90	UniRef90_Q65PU5	Lj965 prophage terminase large subunit	NA
UHGV-0096066_2	eggNOG-mapper	257314.LJ_0308	Terminase-like family	NA
UHGV-0096066_2	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0096066_2	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0096066_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0096066_2	COG	COG1783	Phage terminase large subunit	NA
UHGV-0096066_2	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0096066_3	PHROG	phrog_64	portal protein	head and packaging
UHGV-0096066_3	UniRef90	UniRef90_Q65PU4	Lj965 prophage portal protein	NA
UHGV-0096066_3	eggNOG-mapper	257314.LJ_0309	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0096066_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0096066_3	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0096066_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0096066_4	KOfam	K07584	NA	NA
UHGV-0096066_4	PHROG	phrog_4478	peptidase	other
UHGV-0096066_4	UniRef90	UniRef90_A0A366KHC2	Ribosomal-processing cysteine protease Prp	NA
UHGV-0096066_4	eggNOG-mapper	257314.LJ_0310	Cysteine protease Prp	NA
UHGV-0096066_4	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0096066_4	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0096066_5	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0096066_5	UniRef90	UniRef90_Q65PU2	Lj965 prophage minor head protein	NA
UHGV-0096066_5	eggNOG-mapper	257314.LJ_0311	Phage Mu protein F like protein	NA
UHGV-0096066_5	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0096066_5	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0096066_5	COG	COG2369	NA	NA
UHGV-0096066_5	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0096066_6	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0096066_6	UniRef90	UniRef90_A0A8A8L7A9	NA	NA
UHGV-0096066_6	eggNOG-mapper	257314.LJ_0312	NA	NA
UHGV-0096066_6	Pfam	PF14265	NA	DUF4355
UHGV-0096066_6	Structural annotation	PF14265	NA	NA
UHGV-0096066_7	PHROG	phrog_909	major head protein	head and packaging
UHGV-0096066_7	eggNOG-mapper	257314.LJ_0313	NA	NA
UHGV-0096066_8	PHROG	phrog_29	major head protein	head and packaging
UHGV-0096066_8	UniRef90	UniRef90_A0A366KHD5	Major capsid protein E	NA
UHGV-0096066_8	eggNOG-mapper	257314.LJ_0314	Phage major capsid protein E	NA
UHGV-0096066_8	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0096066_8	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0096066_9	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0096066_9	UniRef90	UniRef90_A0A8A4UWP8	Phage head-tail connector protein	NA
UHGV-0096066_9	eggNOG-mapper	257314.LJ_0315	NA	NA
UHGV-0096066_9	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0096066_9	Structural annotation	PF05135	NA	NA
UHGV-0096066_10	PHROG	phrog_2168	NA	unknown function
UHGV-0096066_10	UniRef90	UniRef90_A0A0R1UW44	NA	NA
UHGV-0096066_10	eggNOG-mapper	257314.LJ_0316	NA	NA
UHGV-0096066_10	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0096066_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0096066_11	UniRef90	UniRef90_A0A7W3UJW0	HK97 gp10 family phage protein	NA
UHGV-0096066_11	eggNOG-mapper	257314.LJ_0317	NA	NA
UHGV-0096066_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0096066_11	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0096066_11	Structural annotation	TIGR01725	NA	NA
UHGV-0096066_12	UniRef90	UniRef90_A0A0R2G0R1	NA	NA
UHGV-0096066_12	eggNOG-mapper	257314.LJ_0318	NA	NA
UHGV-0096066_12	Structural annotation	PF05657	NA	NA
UHGV-0096066_13	PHROG	phrog_158	major tail protein	tail
UHGV-0096066_13	UniRef90	UniRef90_F4AH32	Phage major tail protein	NA
UHGV-0096066_13	eggNOG-mapper	257314.LJ_0319	Phage tail tube protein, TTP	NA
UHGV-0096066_13	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0096066_13	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0096066_14	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0096066_14	UniRef90	UniRef90_A0A0U5JYD4	Lj965 prophage protein	NA
UHGV-0096066_14	eggNOG-mapper	257314.LJ_0320	NA	NA
UHGV-0096066_14	Pfam	PF19591	NA	DUF6096
UHGV-0096066_14	Structural annotation	PF19591, TIGR01674	NA	NA
UHGV-0096066_15	PHROG	phrog_2066	NA	unknown function
UHGV-0096066_15	UniRef90	UniRef90_A0A0R2GAJ5	NA	NA
UHGV-0096066_15	eggNOG-mapper	257314.LJ_0321	NA	NA
UHGV-0096066_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0096066_16	UniRef90	UniRef90_F4AC87	Putative phage minor tail protein	NA
UHGV-0096066_16	eggNOG-mapper	257314.LJ_0322	Phage tail tape measure protein TP901	NA
UHGV-0096066_16	COG	COG1511	NA	NA
UHGV-0096066_17	PHROG	phrog_1194	NA	unknown function
UHGV-0096066_17	UniRef90	UniRef90_A0A0R1VMM5	NA	NA
UHGV-0096066_17	eggNOG-mapper	257314.LJ_0323	NA	NA
UHGV-0096066_17	Pfam	PF20458	NA	DUF6711
UHGV-0096066_17	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0096066_18	PHROG	phrog_22212	NA	unknown function
UHGV-0096066_18	UniRef90	UniRef90_A0A4S2F369	Peptidase (Fragment)	NA
UHGV-0096066_18	eggNOG-mapper	257314.LJ_0324	gp58-like protein	NA
UHGV-0096066_18	COG	COG0845	Multidrug efflux pump subunit AcrA (membrane-fusion protein)	NA
UHGV-0096066_18	Structural annotation	PF05113, PF09327, NF033848, COG3500	NA	NA
UHGV-0096066_19	PHROG	phrog_1330	tail protein	tail
UHGV-0096066_19	UniRef90	UniRef90_A0A366KHU9	Peptidase S74 domain-containing protein	NA
UHGV-0096066_19	eggNOG-mapper	257314.LJ_0324	gp58-like protein	NA
UHGV-0096066_19	Pfam	PF07902	gp58-like protein	Gp58
UHGV-0096066_19	COG	COG0845	Multidrug efflux pump subunit AcrA (membrane-fusion protein)	NA
UHGV-0096066_20	PHROG	phrog_13529	NA	unknown function
UHGV-0096066_21	PHROG	phrog_2566	NA	unknown function
UHGV-0096066_21	UniRef90	UniRef90_A8U7X4	Lj965 prophage protein	NA
UHGV-0096066_21	eggNOG-mapper	257314.LJ_0325	NA	NA
UHGV-0096066_22	PHROG	phrog_4325	holin	lysis
UHGV-0096066_22	UniRef90	UniRef90_B8R662	Holin	NA
UHGV-0096066_22	eggNOG-mapper	97137.C821_00023	NA	NA
UHGV-0096066_22	Structural annotation	PF14248, COG2259	NA	NA
UHGV-0096066_23	PHROG	phrog_3671	NA	unknown function
UHGV-0096066_24	PHROG	phrog_19508	holin	lysis
UHGV-0096066_24	UniRef90	UniRef90_Q38316	Holin	NA
UHGV-0096066_25	KOfam	K07273	acm; lysozyme	NA
UHGV-0096066_25	PHROG	phrog_291	endolysin	lysis
UHGV-0096066_25	UniRef90	UniRef90_A0A366KHI3	Lysin	NA
UHGV-0096066_25	eggNOG-mapper	324831.LGAS_0632	Glycosyl hydrolases family 25	NA
UHGV-0096066_25	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0096066_25	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0096066_25	Structural annotation	PF01183, PF08460, MF_00496, NF033202, NF009621, COG3757	NA	NA