UHGV-0096149

Genome information

Genome length 36,735 bps

CDS count 55

Completeness 88.21% (medium-quality)

geNomad score 0.9698

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096149
vOTU ID	vOTU-017552
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_227856
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9698
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	81.46
Jumbo phage	No

Genome content
Genome length	36,735 bps
GC content	53.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	88.75%
Average CDS length	597.55 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096149_1	UniRef90	UniRef90_A0A415CGK8	Rubrerythrin family protein	NA
UHGV-0096149_1	eggNOG-mapper	742823.HMPREF9465_01851	Iron hydrogenase small subunit	NA
UHGV-0096149_1	Pfam	PF02915	Rubrerythrin	Rubrerythrin
UHGV-0096149_1	Pfam	PF21349	Rubrerythrin, rubredoxin-like domain	RUBY_RBDX
UHGV-0096149_1	COG	COG1146	NAD-dependent dihydropyrimidine dehydrogenase, PreA subunit	NA
UHGV-0096149_3	UniRef90	UniRef90_A0A415CGL9	NA	NA
UHGV-0096149_4	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0096149_4	PHROG	phrog_7	endolysin	lysis
UHGV-0096149_4	UniRef90	UniRef90_UPI00048D5EDD	lysozyme	NA
UHGV-0096149_4	eggNOG-mapper	1122599.AUGR01000011_gene4029	Phage lysozyme	NA
UHGV-0096149_4	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0096149_4	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0096149_4	HAMAP	MF_04110	Endolysin	NA
UHGV-0096149_4	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0096149_5	PHROG	phrog_920	holin	lysis
UHGV-0096149_6	PHROG	phrog_1443	NA	unknown function
UHGV-0096149_6	Structural annotation	PF10043, NF008028	NA	NA
UHGV-0096149_7	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0096149_7	UniRef90	UniRef90_UPI001D0AA195	phage tail assembly chaperone	NA
UHGV-0096149_7	eggNOG-mapper	742823.HMPREF9465_01858	Phage tail assembly chaperone protein	NA
UHGV-0096149_7	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0096149_7	Structural annotation	PF16778	NA	NA
UHGV-0096149_8	UniRef90	UniRef90_UPI00194F0D46	pectinesterase family protein	NA
UHGV-0096149_8	eggNOG-mapper	411464.DESPIG_00858	NA	NA
UHGV-0096149_9	PHROG	phrog_203	tail protein	tail
UHGV-0096149_9	UniRef90	UniRef90_UPI000F60B3C5	NA	NA
UHGV-0096149_9	eggNOG-mapper	883.DvMF_0750	NA	NA
UHGV-0096149_9	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0096149_9	COG	COG3778	NA	NA
UHGV-0096149_9	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0096149_10	PHROG	phrog_6	baseplate protein	tail
UHGV-0096149_10	UniRef90	UniRef90_A0A5B7ZKF1	Baseplate J/gp47 family protein	NA
UHGV-0096149_10	eggNOG-mapper	742821.HMPREF9464_01817	Baseplate J family protein	NA
UHGV-0096149_10	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0096149_10	COG	COG3299	NA	NA
UHGV-0096149_10	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0096149_11	PHROG	phrog_180	tail protein	tail
UHGV-0096149_11	UniRef90	UniRef90_A0A560D0U5	Phage gp46-like protein	NA
UHGV-0096149_11	eggNOG-mapper	570967.JMLV01000018_gene455	Phage protein GP46	NA
UHGV-0096149_11	Pfam	PF07409	NA	GP46
UHGV-0096149_11	COG	COG4381	NA	NA
UHGV-0096149_11	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0096149_12	UniRef90	UniRef90_E7H532	Prophage MuSo2	NA
UHGV-0096149_12	eggNOG-mapper	742821.HMPREF9464_01820	Bacteriophage Mu Gp45 protein	NA
UHGV-0096149_12	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0096149_12	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0096149_12	COG	COG4384	NA	NA
UHGV-0096149_12	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0096149_13	PHROG	phrog_177	tail protein	tail
UHGV-0096149_13	UniRef90	UniRef90_A0A2W4U8P8	Baseplate protein	NA
UHGV-0096149_13	eggNOG-mapper	157783.LK03_15460	tail protein	NA
UHGV-0096149_13	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0096149_13	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0096149_13	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0096149_14	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0096149_14	UniRef90	UniRef90_A0A5B7ZLP1	DNA_circ_N domain-containing protein	NA
UHGV-0096149_14	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0096149_14	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0096149_14	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0096149_14	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0096149_15	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-0096149_15	eggNOG-mapper	742821.HMPREF9464_01824	Phage-related minor tail protein	NA
UHGV-0096149_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0096149_15	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0096149_16	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0096149_17	PHROG	phrog_185	tail tube protein	tail
UHGV-0096149_17	UniRef90	UniRef90_A0A6L6YJW8	Phage tail protein	NA
UHGV-0096149_17	eggNOG-mapper	90371.CY43_10585	phage tail	NA
UHGV-0096149_17	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0096149_17	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0096149_18	PHROG	phrog_165	tail sheath	tail
UHGV-0096149_18	UniRef90	UniRef90_A0A5B7ZKE4	Phage tail protein	NA
UHGV-0096149_18	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0096149_18	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0096149_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0096149_18	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0096149_18	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0096149_19	PHROG	phrog_209	portal protein	head and packaging
UHGV-0096149_19	eggNOG-mapper	29486.NJ56_17665	NA	NA
UHGV-0096149_19	Structural annotation	PF09646	NA	NA
UHGV-0096149_20	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0096149_20	UniRef90	UniRef90_A0A1Y0FI51	Aminotransferase	NA
UHGV-0096149_20	Structural annotation	TIGR01725	NA	NA
UHGV-0096149_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-0096149_21	UniRef90	UniRef90_UPI0007E2F3D8	phage head closure protein	NA
UHGV-0096149_21	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-0096149_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0096149_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0096149_22	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0096149_22	UniRef90	UniRef90_UPI0006713445	head-tail connector protein	NA
UHGV-0096149_22	eggNOG-mapper	1121871.AUAT01000022_gene1852	Phage gp6-like head-tail connector protein	NA
UHGV-0096149_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0096149_22	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0096149_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0096149_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0096149_23	UniRef90	UniRef90_UPI000671041A	phage major capsid protein	NA
UHGV-0096149_23	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-0096149_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0096149_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0096149_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0096149_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0096149_24	KOfam	K06904	NA	NA
UHGV-0096149_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0096149_24	UniRef90	UniRef90_A0A6L6YJM7	HK97 family phage prohead protease	NA
UHGV-0096149_24	eggNOG-mapper	742821.HMPREF9464_01832	Caudovirus prohead serine protease	NA
UHGV-0096149_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0096149_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0096149_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0096149_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0096149_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0096149_25	UniRef90	UniRef90_UPI000670884E	phage portal protein	NA
UHGV-0096149_25	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0096149_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0096149_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0096149_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0096149_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0096149_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0096149_26	UniRef90	UniRef90_A0A6L6YGT4	Terminase large subunit	NA
UHGV-0096149_26	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0096149_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0096149_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0096149_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0096149_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0096149_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0096149_27	UniRef90	UniRef90_UPI000DE972B2	phage terminase small subunit P27 family	NA
UHGV-0096149_27	eggNOG-mapper	1485544.JQKP01000008_gene1674	Phage terminase, small subunit	NA
UHGV-0096149_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0096149_27	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0096149_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0096149_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0096149_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0096149_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0096149_28	UniRef90	UniRef90_R5PK02	Putative HNH endonuclease	NA
UHGV-0096149_28	eggNOG-mapper	1357275.AVEL02000151_gene1515	HNH nucleases	NA
UHGV-0096149_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0096149_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0096149_28	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0096149_29	Structural annotation	PF06530, NF007225	NA	NA
UHGV-0096149_30	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0096149_30	UniRef90	UniRef90_UPI0012BD0F1C	NA	NA
UHGV-0096149_30	eggNOG-mapper	469610.HMPREF0189_01178	NA	NA
UHGV-0096149_30	Structural annotation	PF06356, MF_04160, NF033179, COG1591	NA	NA
UHGV-0096149_36	PHROG	phrog_345	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0096149_36	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0096149_36	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0096149_37	UniRef90	UniRef90_UPI0006717567	helix-turn-helix domain-containing protein	NA
UHGV-0096149_37	eggNOG-mapper	571.MC52_23715	Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA
UHGV-0096149_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096149_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0096149_38	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0096149_38	UniRef90	UniRef90_UPI0013F5F799	LexA family transcriptional regulator	NA
UHGV-0096149_38	eggNOG-mapper	762966.HMPREF9439_01014	Peptidase S24-like	NA
UHGV-0096149_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096149_38	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0096149_38	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0096149_38	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0096149_44	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0096149_44	UniRef90	UniRef90_UPI0012BC6465	ATP-binding protein	NA
UHGV-0096149_44	eggNOG-mapper	669262.COK_1592	NA	NA
UHGV-0096149_44	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0096149_45	PHROG	phrog_743	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0096149_45	eggNOG-mapper	360910.BAV1290	NA	NA
UHGV-0096149_45	Structural annotation	PF05037, MF_00984, NF004512, COG2965	NA	NA
UHGV-0096149_48	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0096149_48	UniRef90	UniRef90_UPI0013F59ED8	Rha family transcriptional regulator	NA
UHGV-0096149_48	eggNOG-mapper	382640.BT_0998	Phage regulatory protein	NA
UHGV-0096149_48	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0096149_48	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0096149_48	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0096149_48	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0096149_49	PHROG	phrog_236	nucleotide kinase	other
UHGV-0096149_49	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0096149_49	Pfam	PF11753	NA	DUF3310
UHGV-0096149_50	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0096149_50	UniRef90	UniRef90_A0A285PT93	Siphovirus Gp157	NA
UHGV-0096149_50	eggNOG-mapper	1227360.C176_12583	Siphovirus Gp157	NA
UHGV-0096149_50	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0096149_50	Structural annotation	PF05565	NA	NA
UHGV-0096149_52	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0096149_52	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0096149_53	KOfam	K07733	alpA; prophage regulatory protein	NA
UHGV-0096149_53	UniRef90	UniRef90_A0A415CGK6	AlpA family phage regulatory protein	NA
UHGV-0096149_53	eggNOG-mapper	1122243.KB903798_gene1693	Transcriptional regulator	NA
UHGV-0096149_53	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0096149_53	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0096149_54	KOfam	K14059	int; integrase	NA
UHGV-0096149_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0096149_54	UniRef90	UniRef90_A0A415CGI9	NA	NA
UHGV-0096149_54	eggNOG-mapper	1203554.HMPREF1476_00213	Belongs to the 'phage' integrase family	NA
UHGV-0096149_54	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0096149_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0096149_54	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0096149_55	KOfam	K03187	ureE; urease accessory protein	NA
UHGV-0096149_55	eggNOG-mapper	1203554.HMPREF1476_00527	NA	NA