UHGV-0096167

Genome information

vOTU vOTU-041936

Genome length 32,461 bps

CDS count 42

Completeness 62.45% (medium-quality)

geNomad score 0.9058

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096167
vOTU ID	vOTU-041936
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_233236
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.45% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9058
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.54
Jumbo phage	No

Genome content
Genome length	32,461 bps
GC content	61.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	90.59%
Average CDS length	703.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096167_1	UniRef90	UniRef90_E3EC65	M1-360	NA
UHGV-0096167_1	eggNOG-mapper	352165.HMPREF7215_2354	NA	NA
UHGV-0096167_2	KOfam	K06987	NA	NA
UHGV-0096167_2	UniRef90	UniRef90_A0A3P1Y3N9	Deacylase	NA
UHGV-0096167_2	eggNOG-mapper	352165.HMPREF7215_2355	PFAM Succinylglutamate desuccinylase Aspartoacylase	NA
UHGV-0096167_2	COG	COG3608	Predicted deacylase	NA
UHGV-0096167_3	KOfam	K20523	SH3YL1; SH3 domain-containing YSC84-like protein 1	NA
UHGV-0096167_3	UniRef90	UniRef90_D1Y552	Ysc84 domain-containing protein	NA
UHGV-0096167_3	eggNOG-mapper	352165.HMPREF7215_2356	PFAM Family of	NA
UHGV-0096167_3	Pfam	PF04366	Las17-binding protein actin regulator	Ysc84
UHGV-0096167_3	COG	COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	NA
UHGV-0096167_4	UniRef90	UniRef90_A0A3A9HQE9	Chemotaxis protein	NA
UHGV-0096167_4	eggNOG-mapper	352165.HMPREF7215_2817	NA	NA
UHGV-0096167_5	eggNOG-mapper	645512.GCWU000246_00717	LydA holin phage, holin superfamily III	NA
UHGV-0096167_5	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-0096167_6	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0096167_6	PHROG	phrog_894	endolysin	lysis
UHGV-0096167_6	UniRef90	UniRef90_A0A1V4AIV5	Glycoside hydrolase family 24	NA
UHGV-0096167_6	eggNOG-mapper	352165.HMPREF7215_2814	Peptidase M15	NA
UHGV-0096167_6	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0096167_6	COG	COG3108	NA	NA
UHGV-0096167_6	Structural annotation	PF08291, NF000086, COG3108	NA	NA
UHGV-0096167_7	PHROG	phrog_2618	NA	unknown function
UHGV-0096167_7	UniRef90	UniRef90_A0A1V4AHY8	NA	NA
UHGV-0096167_7	eggNOG-mapper	1121439.dsat_1956	NA	NA
UHGV-0096167_8	PHROG	phrog_11393	tail fiber protein	tail
UHGV-0096167_8	UniRef90	UniRef90_A0A4R1SCQ5	Phage-related tail fiber protein	NA
UHGV-0096167_8	eggNOG-mapper	645512.GCWU000246_00711	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0096167_8	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0096167_9	KOfam	K06882	NA	NA
UHGV-0096167_9	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0096167_9	UniRef90	UniRef90_C9M6W0	Fibronectin type III domain protein	NA
UHGV-0096167_9	eggNOG-mapper	645512.GCWU000246_00710	cellulase activity	NA
UHGV-0096167_9	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0096167_9	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0096167_9	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0096167_10	PHROG	phrog_32	tail assembly protein	tail
UHGV-0096167_10	UniRef90	UniRef90_C9M6V9	Bacteriophage lambda tail assembly protein I	NA
UHGV-0096167_10	eggNOG-mapper	645512.GCWU000246_00709	tail assembly	NA
UHGV-0096167_10	COG	COG4723	Phage-related protein, tail assembly protein I	NA
UHGV-0096167_11	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-0096167_11	PHROG	phrog_30	minor tail protein	tail
UHGV-0096167_11	UniRef90	UniRef90_C9M6V8	NlpC/P60 family protein	NA
UHGV-0096167_11	eggNOG-mapper	645512.GCWU000246_00708	proteolysis	NA
UHGV-0096167_11	Pfam	PF14464	Prokaryotic homologs of the JAB domain	Prok-JAB
UHGV-0096167_11	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0096167_11	COG	COG1310	Proteasome lid subunit RPN8/RPN11, contains Jab1/MPN domain metalloenzyme (JAMM) motif	NA
UHGV-0096167_11	Structural annotation	PF14464, PF00877, NF041370, TIGR02219, COG1310, COG0791	NA	NA
UHGV-0096167_12	PHROG	phrog_18	minor tail protein	tail
UHGV-0096167_12	UniRef90	UniRef90_C9M6V7	Phage minor tail protein L	NA
UHGV-0096167_12	eggNOG-mapper	645512.GCWU000246_00707	Phage minor tail protein L	NA
UHGV-0096167_12	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0096167_12	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-0096167_12	COG	COG4672	Phage tail protein	NA
UHGV-0096167_12	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-0096167_13	PHROG	phrog_14	minor tail protein	tail
UHGV-0096167_13	UniRef90	UniRef90_C9M6V6	Phage minor tail protein	NA
UHGV-0096167_13	eggNOG-mapper	645512.GCWU000246_00706	Phage minor tail protein	NA
UHGV-0096167_13	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-0096167_13	COG	COG4718	Phage tail protein	NA
UHGV-0096167_13	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0096167_14	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0096167_14	UniRef90	UniRef90_C9M6V5	Phage tail tape measure protein, TP901 family	NA
UHGV-0096167_14	eggNOG-mapper	645512.GCWU000246_00705	Phage tail tape measure protein, TP901 family	NA
UHGV-0096167_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0096167_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0096167_14	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0096167_16	PHROG	phrog_2115	tail protein	tail
UHGV-0096167_16	eggNOG-mapper	644966.Tmar_0046	NA	NA
UHGV-0096167_16	Pfam	PF11836	Phage tail tube protein, GTA-gp10	Phage_TAC_11
UHGV-0096167_17	PHROG	phrog_10528	major tail protein	tail
UHGV-0096167_17	UniRef90	UniRef90_UPI001F2C66C0	phage tail protein	NA
UHGV-0096167_17	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0096167_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0096167_18	PHROG	phrog_176	tail terminator	connector
UHGV-0096167_18	UniRef90	UniRef90_A0A7C9KV56	NA	NA
UHGV-0096167_18	Pfam	PF11367	NA	DUF3168
UHGV-0096167_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0096167_19	UniRef90	UniRef90_C9M6V0	Phage protein, HK97 gp10 family	NA
UHGV-0096167_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0096167_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0096167_20	UniRef90	UniRef90_C9M6U9	Putative phage head-tail adaptor	NA
UHGV-0096167_20	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0096167_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0096167_21	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0096167_21	UniRef90	UniRef90_A0A7Y1JZ51	Phage gp6-like head-tail connector protein	NA
UHGV-0096167_21	eggNOG-mapper	645512.GCWU000246_00698	Phage gp6-like head-tail connector protein	NA
UHGV-0096167_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0096167_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0096167_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0096167_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0096167_22	UniRef90	UniRef90_C9M6U7	Phage major capsid protein, HK97 family	NA
UHGV-0096167_22	eggNOG-mapper	645512.GCWU000246_00697	Phage capsid family	NA
UHGV-0096167_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0096167_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0096167_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0096167_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0096167_23	KOfam	K06904	NA	NA
UHGV-0096167_23	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0096167_23	UniRef90	UniRef90_C9M6U6	Phage prohead protease, HK97 family	NA
UHGV-0096167_23	eggNOG-mapper	645512.GCWU000246_00696	Phage prohead protease, HK97 family	NA
UHGV-0096167_23	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0096167_23	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0096167_23	COG	COG3740	Phage head maturation protease	NA
UHGV-0096167_23	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0096167_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0096167_24	UniRef90	UniRef90_C9M6U5	Phage portal protein, HK97 family	NA
UHGV-0096167_24	eggNOG-mapper	645512.GCWU000246_00695	Phage portal protein	NA
UHGV-0096167_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0096167_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0096167_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0096167_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0096167_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0096167_25	UniRef90	UniRef90_C9M6U4	Putative phage terminase, large subunit	NA
UHGV-0096167_25	eggNOG-mapper	645512.GCWU000246_00694	Phage Terminase	NA
UHGV-0096167_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0096167_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0096167_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0096167_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0096167_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0096167_26	UniRef90	UniRef90_UPI000586EEE7	phage terminase small subunit P27 family	NA
UHGV-0096167_26	eggNOG-mapper	1536773.R70331_25745	Phage terminase, small subunit	NA
UHGV-0096167_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0096167_26	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0096167_26	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0096167_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0096167_28	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0096167_28	PHROG	phrog_216	integrase	integration and excision
UHGV-0096167_28	UniRef90	UniRef90_UPI001F2B5F1C	site-specific integrase	NA
UHGV-0096167_28	eggNOG-mapper	1111479.AXAR01000006_gene657	Integrase	NA
UHGV-0096167_28	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0096167_28	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0096167_28	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0096167_29	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0096167_29	UniRef90	UniRef90_D1Y309	Toxin-antitoxin system, toxin component, HicA family	NA
UHGV-0096167_29	eggNOG-mapper	352165.HMPREF7215_2778	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0096167_29	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0096167_29	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0096167_29	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0096167_30	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0096167_30	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0096167_30	UniRef90	UniRef90_C9M6U0	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0096167_30	eggNOG-mapper	645512.GCWU000246_00690	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0096167_30	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0096167_30	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0096167_30	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0096167_31	eggNOG-mapper	645512.GCWU000246_00689	NA	NA
UHGV-0096167_33	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0096167_33	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0096167_33	UniRef90	UniRef90_D1Y304	Replicative DNA helicase	NA
UHGV-0096167_33	eggNOG-mapper	352165.HMPREF7215_2773	DnaB-like helicase C terminal domain	NA
UHGV-0096167_33	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0096167_33	Pfam	PF06745	KaiC	ATPase
UHGV-0096167_33	COG	COG0305	Replicative DNA helicase	NA
UHGV-0096167_33	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0096167_34	PHROG	phrog_8102	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0096167_34	Pfam	PF13730	Helix-turn-helix domain	HTH_36