UHGV-0096193

Genome information

Genome length 56,568 bps

CDS count 99

Completeness 98.22% (high-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096193
vOTU ID	vOTU-061844
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_225323
BioSample	SAMEA3708622
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.22% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.3
Jumbo phage	No

Genome content
Genome length	56,568 bps
GC content	48.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	99
CDS density	85.01%
Average CDS length	487.73 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096193_1	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0096193_1	PHROG	phrog_10972	tail fiber protein	tail
UHGV-0096193_1	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0096193_1	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0096193_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0096193_1	Structural annotation	PF16640	NA	NA
UHGV-0096193_3	Structural annotation	PF07870, MF_01506	NA	NA
UHGV-0096193_5	PHROG	phrog_1281	NA	unknown function
UHGV-0096193_5	UniRef90	UniRef90_UPI00130E304C	NA	NA
UHGV-0096193_5	eggNOG-mapper	1321815.HMPREF9193_02066	NA	NA
UHGV-0096193_5	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0096193_5	COG	COG3600	NA	NA
UHGV-0096193_9	PHROG	phrog_16490	NA	unknown function
UHGV-0096193_9	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0096193_10	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0096193_11	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0096193_12	Structural annotation	NF010188	NA	NA
UHGV-0096193_13	KOfam	K13525	VCP, CDC48; transitional endoplasmic reticulum ATPase	NA
UHGV-0096193_13	PHROG	phrog_3757	NA	unknown function
UHGV-0096193_13	UniRef90	UniRef90_A0A4Z0Y6M2	ATP-dependent zinc metalloprotease FtsH 3	NA
UHGV-0096193_13	eggNOG-mapper	768710.DesyoDRAFT_1087	ATPase family associated with various cellular activities (AAA)	NA
UHGV-0096193_13	PADLOC	IetA_00002	NA	ietAS
UHGV-0096193_13	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0096193_13	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-0096193_13	Structural annotation	PF00004, MF_00553, TIGR01242, COG1222	NA	NA
UHGV-0096193_14	Structural annotation	PF07878	NA	NA
UHGV-0096193_16	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0096193_16	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0096193_16	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0096193_16	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0096193_16	Pfam	PF13614	AAA domain	AAA_31
UHGV-0096193_16	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0096193_16	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0096193_18	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0096193_18	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0096193_18	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0096193_18	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0096193_18	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0096193_18	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0096193_18	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0096193_19	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0096193_19	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0096193_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0096193_23	UniRef90	UniRef90_UPI001D05D211	helix-turn-helix transcriptional regulator	NA
UHGV-0096193_23	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0096193_23	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0096193_23	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0096193_24	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0096193_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096193_24	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0096193_25	Structural annotation	PF10922	NA	NA
UHGV-0096193_27	Structural annotation	TIGR03826	NA	NA
UHGV-0096193_29	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0096193_30	Structural annotation	PF14143	NA	NA
UHGV-0096193_31	KOfam	K07738	nrdR; transcriptional repressor NrdR	NA
UHGV-0096193_31	eggNOG-mapper	1165096.ARWF01000001_gene689	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0096193_31	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0096193_31	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0096193_31	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0096193_33	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0096193_33	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0096193_33	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0096193_33	Pfam	PF13479	AAA domain	AAA_24
UHGV-0096193_33	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0096193_34	PHROG	phrog_18107	NA	unknown function
UHGV-0096193_34	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0096193_34	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0096193_34	Structural annotation	PF05037	NA	NA
UHGV-0096193_36	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0096193_36	UniRef90	UniRef90_UPI001C00B13F	DNA cytosine methyltransferase	NA
UHGV-0096193_36	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0096193_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0096193_36	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0096193_37	PHROG	phrog_35094	NA	unknown function
UHGV-0096193_37	eggNOG-mapper	457424.BFAG_02409	NA	NA
UHGV-0096193_39	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0096193_39	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0096193_39	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0096193_39	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0096193_47	Structural annotation	PF16677	NA	NA
UHGV-0096193_48	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0096193_48	eggNOG-mapper	1321778.HMPREF1982_02288	restriction endonuclease	NA
UHGV-0096193_48	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0096193_48	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0096193_51	Structural annotation	NF041588	NA	NA
UHGV-0096193_56	UniRef90	UniRef90_UPI001AD832E5	Lar family restriction alleviation protein	NA
UHGV-0096193_56	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0096193_56	Structural annotation	PF14354	NA	NA
UHGV-0096193_57	PHROG	phrog_15768	NA	unknown function
UHGV-0096193_57	UniRef90	UniRef90_E2ZNS6	NA	NA
UHGV-0096193_57	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0096193_57	Pfam	PF19808	NA	DUF6291
UHGV-0096193_57	Structural annotation	PF19808	NA	NA
UHGV-0096193_58	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0096193_58	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0096193_58	UniRef90	UniRef90_UPI001CBC4B63	AAA family ATPase	NA
UHGV-0096193_58	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0096193_58	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0096193_58	COG	COG0305	Replicative DNA helicase	NA
UHGV-0096193_58	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0096193_59	PHROG	phrog_419	NA	unknown function
UHGV-0096193_59	UniRef90	UniRef90_A6MAI4	Gp119	NA
UHGV-0096193_59	eggNOG-mapper	768486.EHR_02665	NA	NA
UHGV-0096193_59	Structural annotation	PF14083	NA	NA
UHGV-0096193_61	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0096193_61	eggNOG-mapper	1519439.JPJG01000044_gene958	NA	NA
UHGV-0096193_67	Structural annotation	PF09624, PF14263, MF_00791, NF038353, TIGR02588, COG4885	NA	NA
UHGV-0096193_68	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0096193_68	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0096193_68	UniRef90	UniRef90_A0A1Y4EUA0	Bro-N domain-containing protein	NA
UHGV-0096193_68	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0096193_68	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0096193_68	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0096193_68	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0096193_69	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0096193_71	UniRef90	UniRef90_UPI001C02D1DF	winged helix-turn-helix transcriptional regulator	NA
UHGV-0096193_71	Structural annotation	PF20075, TIGR02612, COG1396	NA	NA
UHGV-0096193_72	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0096193_72	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0096193_72	UniRef90	UniRef90_UPI001A9B5A42	recombinase family protein	NA
UHGV-0096193_72	eggNOG-mapper	1443122.Z958_05795	Resolvase, N terminal domain	NA
UHGV-0096193_72	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0096193_72	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0096193_72	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0096193_74	Structural annotation	NF009949	NA	NA
UHGV-0096193_76	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0096193_76	UniRef90	UniRef90_A0A3D4KYF7	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0096193_76	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0096193_76	COG	COG5410	NA	NA
UHGV-0096193_76	Structural annotation	PF05203, PF17289, MF_04147, MF_01420, NF033889, NF007072, COG5362, COG1372	NA	NA
UHGV-0096193_78	PHROG	phrog_64	portal protein	head and packaging
UHGV-0096193_78	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0096193_78	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0096193_78	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0096193_78	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0096193_81	PHROG	phrog_29	major head protein	head and packaging
UHGV-0096193_81	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0096193_81	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-0096193_81	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0096193_81	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0096193_82	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0096193_82	Structural annotation	TIGR01560	NA	NA
UHGV-0096193_83	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0096193_84	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0096193_85	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0096193_86	PHROG	phrog_158	major tail protein	tail
UHGV-0096193_86	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0096193_86	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0096193_86	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0096193_87	UniRef90	UniRef90_A0A496N7D3	NA	NA
UHGV-0096193_87	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0096193_87	Pfam	PF16478	NA	DUF5055
UHGV-0096193_87	Structural annotation	PF16478	NA	NA
UHGV-0096193_88	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0096193_89	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0096193_89	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0096193_89	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0096193_90	PHROG	phrog_1194	NA	unknown function
UHGV-0096193_90	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0096193_90	Pfam	PF20458	NA	DUF6711
UHGV-0096193_90	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0096193_91	PHROG	phrog_13879	NA	unknown function
UHGV-0096193_91	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0096193_91	Pfam	PF19789	NA	DUF6273
UHGV-0096193_91	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0096193_92	PHROG	phrog_18725	NA	unknown function
UHGV-0096193_92	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0096193_93	PHROG	phrog_9534	head protein	head and packaging
UHGV-0096193_93	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0096193_93	COG	COG5492	NA	NA
UHGV-0096193_95	PHROG	phrog_1382	NA	unknown function
UHGV-0096193_96	KOfam	K07273	acm; lysozyme	NA
UHGV-0096193_96	PHROG	phrog_291	endolysin	lysis
UHGV-0096193_96	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-0096193_96	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0096193_96	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0096193_96	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0096193_96	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0096193_98	PHROG	phrog_15303	NA	unknown function
UHGV-0096193_98	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0096193_99	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA