UHGV-0096301

Genome information

Genome length 39,909 bps

CDS count 77

Completeness 100.00% (complete)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096301
vOTU ID	vOTU-045374
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_204848
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.8
Jumbo phage	No

Genome content
Genome length	39,909 bps
GC content	52.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	77
CDS density	95.19%
Average CDS length	497.77 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096301_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0096301_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0096301_1	UniRef90	UniRef90_UPI000831CB3C	helix-turn-helix domain-containing protein	NA
UHGV-0096301_1	eggNOG-mapper	696281.Desru_2782	Helix-turn-helix XRE-family like proteins	NA
UHGV-0096301_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096301_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0096301_1	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0096301_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096301_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0096301_6	Structural annotation	PF12844	NA	NA
UHGV-0096301_7	KOfam	K14059	int; integrase	NA
UHGV-0096301_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0096301_7	UniRef90	UniRef90_A0A3D3Y5E0	Integrase	NA
UHGV-0096301_7	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0096301_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0096301_7	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0096301_7	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0096301_8	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0096301_9	Structural annotation	PF12510	NA	NA
UHGV-0096301_10	PHROG	phrog_20016	NA	unknown function
UHGV-0096301_10	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0096301_10	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0096301_10	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0096301_11	PHROG	phrog_16490	NA	unknown function
UHGV-0096301_11	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0096301_12	PHROG	phrog_22984	NA	unknown function
UHGV-0096301_13	PHROG	phrog_21718	NA	unknown function
UHGV-0096301_13	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0096301_14	PHROG	phrog_3754	NA	unknown function
UHGV-0096301_14	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0096301_15	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0096301_16	UniRef90	UniRef90_A0A358M2Y7	PG_binding_1 domain-containing protein	NA
UHGV-0096301_16	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0096301_16	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0096301_16	Structural annotation	NF033743	NA	NA
UHGV-0096301_17	PHROG	phrog_13256	NA	unknown function
UHGV-0096301_17	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-0096301_19	PHROG	phrog_937	hemolysin	other
UHGV-0096301_20	eggNOG-mapper	1235797.C816_04174	NA	NA
UHGV-0096301_21	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0096301_21	UniRef90	UniRef90_UPI0018AA16B6	NA	NA
UHGV-0096301_21	eggNOG-mapper	1203606.HMPREF1526_01356	cell wall binding repeat	NA
UHGV-0096301_21	Pfam	PF19789	NA	DUF6273
UHGV-0096301_21	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-0096301_21	Structural annotation	PF19789	NA	NA
UHGV-0096301_22	PHROG	phrog_37900	NA	unknown function
UHGV-0096301_22	UniRef90	UniRef90_UPI00051B4A1C	NA	NA
UHGV-0096301_22	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0096301_22	Pfam	PF19789	NA	DUF6273
UHGV-0096301_22	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0096301_22	Structural annotation	PF19789	NA	NA
UHGV-0096301_23	eggNOG-mapper	665956.HMPREF1032_03054	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0096301_23	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0096301_24	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0096301_24	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0096301_26	Structural annotation	PF08481, NF033814, COG5456	NA	NA
UHGV-0096301_27	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0096301_28	PHROG	phrog_26795	NA	unknown function
UHGV-0096301_28	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-0096301_28	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0096301_29	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0096301_29	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0096301_29	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0096301_31	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0096301_31	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0096301_31	COG	COG5412	Phage-related protein	NA
UHGV-0096301_31	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0096301_33	PHROG	phrog_18646	NA	unknown function
UHGV-0096301_34	PHROG	phrog_885	major tail protein	tail
UHGV-0096301_34	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0096301_34	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0096301_34	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0096301_35	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0096301_35	Structural annotation	PF11367	NA	NA
UHGV-0096301_36	PHROG	phrog_17977	NA	unknown function
UHGV-0096301_36	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0096301_36	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0096301_38	PHROG	phrog_544	major head protein	head and packaging
UHGV-0096301_38	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0096301_38	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0096301_38	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0096301_38	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0096301_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0096301_39	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0096301_39	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0096301_39	Structural annotation	PF06810	NA	NA
UHGV-0096301_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0096301_40	UniRef90	UniRef90_UPI001411BC8C	HK97 gp10 family phage protein	NA
UHGV-0096301_40	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0096301_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0096301_40	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0096301_40	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0096301_41	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0096301_41	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0096301_41	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0096301_41	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0096301_41	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0096301_41	COG	COG2369	NA	NA
UHGV-0096301_41	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0096301_42	PHROG	phrog_64	portal protein	head and packaging
UHGV-0096301_42	UniRef90	UniRef90_UPI001AA0B7FF	phage portal protein	NA
UHGV-0096301_42	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0096301_42	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0096301_42	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0096301_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0096301_43	PHROG	phrog_10250	NA	unknown function
UHGV-0096301_43	UniRef90	UniRef90_A0A8J6MB41	PBSX family phage terminase large subunit	NA
UHGV-0096301_43	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0096301_43	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0096301_43	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0096301_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0096301_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0096301_43	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0096301_44	Structural annotation	PF07141, NF012144	NA	NA
UHGV-0096301_45	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0096301_45	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0096301_45	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-0096301_45	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0096301_45	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0096301_45	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0096301_45	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0096301_45	COG	COG0863	DNA modification methylase	NA
UHGV-0096301_45	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0096301_46	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0096301_46	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0096301_48	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0096301_48	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0096301_48	UniRef90	UniRef90_A0A3D3Y5Q7	dUTP diphosphatase	NA
UHGV-0096301_48	eggNOG-mapper	887929.HMP0721_1278	dUTPase	NA
UHGV-0096301_48	Pfam	PF00692	dUTPase	dUTPase
UHGV-0096301_48	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0096301_48	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0096301_48	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0096301_50	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0096301_50	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0096301_50	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0096301_51	UniRef90	UniRef90_A0A1C6DFA0	FAD-dependent thymidylate synthase	NA
UHGV-0096301_51	eggNOG-mapper	935948.KE386495_gene2250	NA	NA
UHGV-0096301_51	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0096301_51	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0096301_58	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0096301_58	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0096301_59	PHROG	phrog_3136	NA	unknown function
UHGV-0096301_59	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0096301_59	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0096301_59	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0096301_61	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0096301_61	UniRef90	UniRef90_D4C6F1	Elp3 domain-containing protein	NA
UHGV-0096301_61	eggNOG-mapper	742738.HMPREF9460_03770	radical SAM domain protein	NA
UHGV-0096301_61	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0096301_61	Structural annotation	PF04055, MF_01864, TIGR04072, COG0621	NA	NA
UHGV-0096301_64	PHROG	phrog_15768	NA	unknown function
UHGV-0096301_64	UniRef90	UniRef90_A0A7C1PUJ6	NA	NA
UHGV-0096301_64	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0096301_64	Structural annotation	PF07120, COG3756	NA	NA
UHGV-0096301_65	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0096301_65	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0096301_65	UniRef90	UniRef90_UPI001C02B0E9	single-stranded DNA-binding protein	NA
UHGV-0096301_65	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0096301_65	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0096301_65	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0096301_65	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0096301_65	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0096301_65	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0096301_67	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0096301_67	UniRef90	UniRef90_A0A3D1LDS4	HNH domain-containing protein	NA
UHGV-0096301_67	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0096301_67	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0096301_68	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0096301_68	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0096301_68	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0096301_68	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0096301_69	PHROG	phrog_14970	NA	unknown function
UHGV-0096301_69	eggNOG-mapper	642492.Clole_0944	double-strand break repair protein	NA
UHGV-0096301_69	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0096301_69	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0096301_69	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0096301_72	PHROG	phrog_4973	NA	unknown function
UHGV-0096301_72	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0096301_72	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0096301_72	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0096301_72	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0096301_77	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0096301_77	UniRef90	UniRef90_B8I936	Helix-turn-helix domain protein	NA
UHGV-0096301_77	eggNOG-mapper	394503.Ccel_3076	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0096301_77	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096301_77	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0096301_77	Structural annotation	PF01381, NF041951, COG1396	NA	NA