UHGV-0096309

Genome information

Genome length 31,051 bps

CDS count 53

Completeness 71.60% (medium-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096309
vOTU ID	vOTU-035328
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_204814
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.26
Jumbo phage	No

Genome content
Genome length	31,051 bps
GC content	46.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	88.32%
Average CDS length	520.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096309_2	PHROG	phrog_372	tail protein	tail
UHGV-0096309_2	UniRef90	UniRef90_UPI001C0AA9E4	NA	NA
UHGV-0096309_2	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0096309_2	Pfam	PF05895	NA	DUF859
UHGV-0096309_2	COG	COG4675	Phage tail collar domain	NA
UHGV-0096309_2	Structural annotation	PF05895, PF08931, MF_04116, NF010681, COG3291	NA	NA
UHGV-0096309_3	PHROG	phrog_6616	tail protein	tail
UHGV-0096309_3	UniRef90	UniRef90_A0A143YYZ5	Peptidase S74 domain-containing protein	NA
UHGV-0096309_3	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0096309_3	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0096309_4	PHROG	phrog_1194	NA	unknown function
UHGV-0096309_4	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-0096309_4	eggNOG-mapper	1414720.CBYM010000002_gene561	NA	NA
UHGV-0096309_4	Pfam	PF20458	NA	DUF6711
UHGV-0096309_4	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0096309_5	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0096309_5	eggNOG-mapper	469596.HMPREF9488_01316	NA	NA
UHGV-0096309_6	PHROG	phrog_64	portal protein	head and packaging
UHGV-0096309_6	UniRef90	UniRef90_UPI001C02F349	phage portal protein	NA
UHGV-0096309_6	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0096309_6	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0096309_6	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0096309_7	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0096309_7	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0096309_7	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0096309_7	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0096309_7	COG	COG5410	NA	NA
UHGV-0096309_7	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0096309_8	PHROG	phrog_1233	NA	unknown function
UHGV-0096309_8	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0096309_8	eggNOG-mapper	1232453.BAIF02000011_gene3355	NA	NA
UHGV-0096309_10	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0096309_10	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0096309_10	UniRef90	UniRef90_A0A352IJG9	Resolvase (Fragment)	NA
UHGV-0096309_10	eggNOG-mapper	411467.BACCAP_03968	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0096309_10	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0096309_10	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0096309_10	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0096309_14	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0096309_14	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-0096309_14	eggNOG-mapper	1415774.U728_1676	DNA-packaging protein gp3	NA
UHGV-0096309_14	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0096309_14	Structural annotation	PF16677	NA	NA
UHGV-0096309_17	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0096309_17	UniRef90	UniRef90_A0A1V5XFC1	Virulence-associated protein E	NA
UHGV-0096309_17	eggNOG-mapper	1235793.C809_02292	Virulence-associated protein E	NA
UHGV-0096309_17	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0096309_17	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0096309_17	Structural annotation	PF05272, MF_00016, NF005477, COG5545	NA	NA
UHGV-0096309_18	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0096309_18	PHROG	phrog_11992	NA	unknown function
UHGV-0096309_18	UniRef90	UniRef90_A0A6L6LVV7	DNA primase	NA
UHGV-0096309_18	eggNOG-mapper	411902.CLOBOL_04301	CHC2 zinc finger	NA
UHGV-0096309_18	PADLOC	drt-cluster192	DRT	DRT
UHGV-0096309_18	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0096309_18	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0096309_18	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0096309_19	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0096309_19	UniRef90	UniRef90_R6N0P8	ERCC4 domain-containing protein	NA
UHGV-0096309_19	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0096309_19	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0096309_19	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0096309_19	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0096309_20	PHROG	phrog_18107	NA	unknown function
UHGV-0096309_20	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0096309_20	Structural annotation	PF05037	NA	NA
UHGV-0096309_22	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0096309_22	UniRef90	UniRef90_A0A8J6P193	AAA family ATPase	NA
UHGV-0096309_22	eggNOG-mapper	1232453.BAIF02000010_gene3337	AAA domain	NA
UHGV-0096309_22	Pfam	PF13479	AAA domain	AAA_24
UHGV-0096309_22	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0096309_24	PHROG	phrog_236	nucleotide kinase	other
UHGV-0096309_24	UniRef90	UniRef90_A0A843F518	NA	NA
UHGV-0096309_24	eggNOG-mapper	1118054.CAGW01000095_gene4680	NA	NA
UHGV-0096309_24	Pfam	PF11753	NA	DUF3310
UHGV-0096309_26	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0096309_26	UniRef90	UniRef90_A0A414ZQZ4	NAD(P)-dependent oxidoreductase	NA
UHGV-0096309_26	eggNOG-mapper	1123263.AUKY01000096_gene1823	DNA restriction-modification system	NA
UHGV-0096309_26	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0096309_26	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-0096309_29	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0096309_29	UniRef90	UniRef90_D7GNT7	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0096309_29	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0096309_29	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0096309_29	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0096309_29	Structural annotation	PF03819, MF_01020, NF001613, COG0140	NA	NA
UHGV-0096309_34	PHROG	phrog_3392	NA	unknown function
UHGV-0096309_34	UniRef90	UniRef90_A8AT45	Gp21	NA
UHGV-0096309_34	eggNOG-mapper	1217710.F969_00044	NA	NA
UHGV-0096309_37	PHROG	phrog_10714	NA	unknown function
UHGV-0096309_40	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0096309_40	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0096309_40	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0096309_40	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0096309_40	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0096309_41	PHROG	phrog_22529	NA	unknown function
UHGV-0096309_41	UniRef90	UniRef90_A0A3D0DJY9	3D domain-containing protein (Fragment)	NA
UHGV-0096309_41	eggNOG-mapper	1410622.JNKY01000010_gene1282	3D domain	NA
UHGV-0096309_41	Pfam	PF06725	3D domain	3D
UHGV-0096309_41	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0096309_41	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0096309_42	PHROG	phrog_14105	NA	unknown function
UHGV-0096309_42	eggNOG-mapper	526218.Sterm_0811	dextransucrase activity	NA
UHGV-0096309_42	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0096309_44	UniRef90	UniRef90_A0A2A8VCA3	Transcriptional regulator	NA
UHGV-0096309_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096309_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0096309_44	Structural annotation	PF13560, TIGR03070, COG1396	NA	NA
UHGV-0096309_45	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0096309_45	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0096309_45	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0096309_47	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0096309_47	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0096309_47	UniRef90	UniRef90_D9SNQ4	Transcriptional regulator, XRE family	NA
UHGV-0096309_47	eggNOG-mapper	592026.GCWU0000282_001622	NA	NA
UHGV-0096309_47	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0096309_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096309_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0096309_47	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0096309_48	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0096309_48	UniRef90	UniRef90_A0A1H8UMG2	Cro/C1-type HTH DNA-binding domain-containing protein	NA
UHGV-0096309_48	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0096309_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096309_48	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0096309_48	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0096309_50	PHROG	phrog_33519	NA	unknown function
UHGV-0096309_50	eggNOG-mapper	500633.CLOHIR_00738	NA	NA
UHGV-0096309_50	Structural annotation	PF13958, NF010262, COG2337	NA	NA
UHGV-0096309_51	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0096309_51	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0096309_51	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0096309_51	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0096309_52	KOfam	K14059	int; integrase	NA
UHGV-0096309_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0096309_52	UniRef90	UniRef90_UPI000F051A1D	tyrosine-type recombinase/integrase	NA
UHGV-0096309_52	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0096309_52	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0096309_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0096309_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0096309_52	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0096309_53	KOfam	K03616	rnfB; H+/Na+-translocating ferredoxin:NAD+ oxidoreductase subunit B [EC:7.1.1.11 7.2.1.2]	NA
UHGV-0096309_53	UniRef90	UniRef90_A0A3D4ECH4	4Fe-4S ferredoxin	NA
UHGV-0096309_53	eggNOG-mapper	397290.C810_00030	4Fe-4S dicluster domain	NA
UHGV-0096309_53	Pfam	PF00037	4Fe-4S binding domain	Fer4
UHGV-0096309_53	NCBIFam	NF038196.1	EFR1 family ferrodoxin	NA
UHGV-0096309_53	COG	COG2768	NA	NA