UHGV-0096317

Genome information

Genome length 37,890 bps

CDS count 46

Completeness 99.90% (high-quality)

geNomad score 0.9669

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096317
vOTU ID	vOTU-013997
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_215169
BioSample	SAMEA3541531
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	Yes

Viral signal
geNomad score	0.9669
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.16
Jumbo phage	No

Genome content
Genome length	37,890 bps
GC content	37.21%
Genetic code	Blepharisma nuclear code (15)
CDS count	46
CDS density	89.31%
Average CDS length	740.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096317_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0096317_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0096317_2	UniRef90	UniRef90_A0A843HR94	Recombinase family protein	NA
UHGV-0096317_2	eggNOG-mapper	1236514.BAKL01000043_gene3362	Recombinase	NA
UHGV-0096317_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0096317_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0096317_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0096317_2	Structural annotation	PF00239, PF07508, PF15188, NF041201, COG1961	NA	NA
UHGV-0096317_5	eggNOG-mapper	1347393.HG726020_gene906	NA	NA
UHGV-0096317_5	Structural annotation	PF12187, MF_01490, NF040854, COG1591	NA	NA
UHGV-0096317_7	UniRef90	UniRef90_UPI000C1C2052	DEAD/DEAH box helicase family protein	NA
UHGV-0096317_7	eggNOG-mapper	435590.BVU_2296	NA	NA
UHGV-0096317_7	Structural annotation	PF02399, MF_00965, TIGR00614, COG1201	NA	NA
UHGV-0096317_8	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0096317_9	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0096317_9	UniRef90	UniRef90_A0A3E4T2C3	HNH endonuclease	NA
UHGV-0096317_9	eggNOG-mapper	1268240.ATFI01000007_gene425	HNH endonuclease	NA
UHGV-0096317_9	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0096317_9	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0096317_10	Structural annotation	NF007216	NA	NA
UHGV-0096317_11	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0096317_12	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0096317_12	UniRef90	UniRef90_D7IS85	Phage terminase, small subunit, P27 family	NA
UHGV-0096317_12	eggNOG-mapper	1122931.AUAE01000036_gene1073	Phage terminase, small subunit	NA
UHGV-0096317_12	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0096317_12	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0096317_12	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0096317_12	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0096317_13	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-0096317_13	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0096317_13	UniRef90	UniRef90_UPI000E447E4F	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0096317_13	eggNOG-mapper	642492.Clole_1843	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0096317_13	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0096317_13	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0096317_13	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0096317_13	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0096317_13	Structural annotation	PF00145, MF_02126, TIGR00675, COG0270	NA	NA
UHGV-0096317_16	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0096317_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0096317_17	UniRef90	UniRef90_D7IS84	Phage terminase large subunit	NA
UHGV-0096317_17	eggNOG-mapper	1122931.AUAE01000036_gene1072	Phage Terminase	NA
UHGV-0096317_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0096317_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0096317_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0096317_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0096317_18	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0096317_18	UniRef90	UniRef90_A0A357B5P0	GIY-YIG domain-containing protein	NA
UHGV-0096317_18	eggNOG-mapper	926559.JoomaDRAFT_1090	Intron encoded nuclease repeat motif	NA
UHGV-0096317_18	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0096317_18	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0096317_18	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0096317_18	Structural annotation	PF07453, PF01541, MF_01029, TIGR01453, COG2827	NA	NA
UHGV-0096317_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0096317_19	UniRef90	UniRef90_K6AEA9	HK97 family phage portal protein	NA
UHGV-0096317_19	eggNOG-mapper	908937.Prede_1355	Phage portal protein	NA
UHGV-0096317_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0096317_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0096317_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0096317_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0096317_20	PHROG	phrog_23820	tail fiber protein	tail
UHGV-0096317_20	eggNOG-mapper	261726.Q6R4W0_9CAUD	NA	NA
UHGV-0096317_29	KOfam	K06904	NA	NA
UHGV-0096317_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0096317_29	UniRef90	UniRef90_A0A496C2C5	HK97 family phage prohead protease	NA
UHGV-0096317_29	eggNOG-mapper	908937.Prede_1354	Caudovirus prohead serine protease	NA
UHGV-0096317_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0096317_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0096317_29	COG	COG3740	Phage head maturation protease	NA
UHGV-0096317_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0096317_30	PHROG	phrog_617	major head protein	head and packaging
UHGV-0096317_30	UniRef90	UniRef90_A0A3R6IXJ0	Phage major capsid protein	NA
UHGV-0096317_30	eggNOG-mapper	1122931.AUAE01000036_gene1069	Phage capsid family	NA
UHGV-0096317_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0096317_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0096317_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0096317_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0096317_31	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0096317_31	UniRef90	UniRef90_A0A316RGV0	Phage gp6-like head-tail connector protein	NA
UHGV-0096317_31	eggNOG-mapper	908937.Prede_1352	Phage gp6-like head-tail connector protein	NA
UHGV-0096317_31	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0096317_31	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0096317_31	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0096317_32	PHROG	phrog_25	head closure Hc1	connector
UHGV-0096317_32	UniRef90	UniRef90_D7IS77	Phage head-tail adaptor	NA
UHGV-0096317_32	eggNOG-mapper	908937.Prede_1351	Phage head-tail joining protein	NA
UHGV-0096317_32	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0096317_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0096317_33	eggNOG-mapper	1347393.HG726020_gene892	NA	NA
UHGV-0096317_33	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0096317_34	PHROG	phrog_347	tail terminator	connector
UHGV-0096317_34	UniRef90	UniRef90_UPI000E03762E	NA	NA
UHGV-0096317_34	eggNOG-mapper	1347393.HG726020_gene891	NA	NA
UHGV-0096317_34	Pfam	PF11367	NA	DUF3168
UHGV-0096317_34	Structural annotation	PF11367, COG5003	NA	NA
UHGV-0096317_35	PHROG	phrog_1407	major tail protein	tail
UHGV-0096317_35	UniRef90	UniRef90_UPI000DFD5B0C	phage tail tube protein	NA
UHGV-0096317_35	eggNOG-mapper	1236517.BAKO01000013_gene1445	Phage tail tube protein	NA
UHGV-0096317_35	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0096317_35	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0096317_36	eggNOG-mapper	908937.Prede_1347	NA	NA
UHGV-0096317_36	Structural annotation	PF11836	NA	NA
UHGV-0096317_38	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0096317_38	eggNOG-mapper	1453496.AT03_15205	COG5281, Phage-related minor tail protein	NA
UHGV-0096317_38	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0096317_38	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0096317_38	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0096317_38	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0096317_39	eggNOG-mapper	908937.Prede_1343	NA	NA
UHGV-0096317_39	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0096317_41	UniRef90	UniRef90_UPI0004833697	YrzE family protein	NA
UHGV-0096317_42	PHROG	phrog_1501	NA	unknown function
UHGV-0096317_42	UniRef90	UniRef90_A0A843GJJ8	NA	NA
UHGV-0096317_42	eggNOG-mapper	679935.Alfi_0537	NA	NA
UHGV-0096317_42	Pfam	PF18925	NA	DUF5675
UHGV-0096317_42	Structural annotation	PF18925	NA	NA
UHGV-0096317_46	PHROG	phrog_38407	NA	unknown function
UHGV-0096317_46	UniRef90	UniRef90_A0A3N2NJI7	Terminase	NA
UHGV-0096317_46	eggNOG-mapper	679191.HMPREF9018_0454	Mu-like prophage FluMu protein gp28	NA
UHGV-0096317_46	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0096317_46	Structural annotation	PF20441, MF_04146, TIGR01547, COG4373	NA	NA