UHGV-0096339

Genome information

vOTU vOTU-042082

Genome length 33,682 bps

CDS count 50

Completeness 85.18% (medium-quality)

geNomad score 0.9586

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096339
vOTU ID	vOTU-042082
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_211713
BioSample	SAMEA3449233
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.18% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9586
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.35
Jumbo phage	No

Genome content
Genome length	33,682 bps
GC content	28.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	90.62%
Average CDS length	613.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096339_1	KOfam	K14059	int; integrase	NA
UHGV-0096339_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0096339_1	UniRef90	UniRef90_UPI0010564931	site-specific integrase	NA
UHGV-0096339_1	eggNOG-mapper	1280689.AUJC01000011_gene1488	Phage integrase family	NA
UHGV-0096339_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0096339_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0096339_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0096339_2	PHROG	phrog_87	metallo-protease	other
UHGV-0096339_2	UniRef90	UniRef90_V9HFH9	Peptidase_M78 domain-containing protein	NA
UHGV-0096339_2	eggNOG-mapper	457396.CSBG_01026	NA	NA
UHGV-0096339_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0096339_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0096339_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0096339_3	eggNOG-mapper	1280689.AUJC01000006_gene2791	breast cancer carboxy-terminal domain	NA
UHGV-0096339_3	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0096339_4	eggNOG-mapper	573061.Clocel_0822	NA	NA
UHGV-0096339_5	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0096339_5	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0096339_5	UniRef90	UniRef90_A0A386PLQ2	BRCT domain-containing protein	NA
UHGV-0096339_5	eggNOG-mapper	1443122.Z958_08595	3' exoribonuclease, RNase T-like	NA
UHGV-0096339_5	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0096339_5	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0096339_5	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0096339_5	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0096339_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0096339_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0096339_6	UniRef90	UniRef90_UPI001055748A	helix-turn-helix domain-containing protein	NA
UHGV-0096339_6	eggNOG-mapper	195103.CPF_1604	transcriptional regulator	NA
UHGV-0096339_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0096339_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096339_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0096339_7	UniRef90	UniRef90_UPI001055675C	helix-turn-helix domain-containing protein	NA
UHGV-0096339_7	eggNOG-mapper	195103.CPF_1603	Helix-turn-helix XRE-family like proteins	NA
UHGV-0096339_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096339_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0096339_8	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0096339_8	UniRef90	UniRef90_UPI001055C865	helix-turn-helix transcriptional regulator	NA
UHGV-0096339_8	eggNOG-mapper	1280689.AUJC01000011_gene1496	Helix-turn-helix XRE-family like proteins	NA
UHGV-0096339_8	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0096339_8	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0096339_8	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0096339_9	PHROG	phrog_6058	NA	unknown function
UHGV-0096339_9	UniRef90	UniRef90_A0A101WT85	Modification methylase SinI	NA
UHGV-0096339_9	eggNOG-mapper	1280689.AUJC01000011_gene1497	NA	NA
UHGV-0096339_9	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0096339_10	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0096339_10	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0096339_10	UniRef90	UniRef90_UPI0010544F20	ParA family protein	NA
UHGV-0096339_10	eggNOG-mapper	536233.CLO_1406	Cellulose biosynthesis protein BcsQ	NA
UHGV-0096339_10	Pfam	PF13614	AAA domain	AAA_31
UHGV-0096339_10	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0096339_10	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0096339_11	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0096339_11	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0096339_11	UniRef90	UniRef90_UPI0010563619	ParB/RepB/Spo0J family partition protein	NA
UHGV-0096339_11	eggNOG-mapper	1415774.U728_1271	Belongs to the ParB family	NA
UHGV-0096339_11	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0096339_11	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0096339_11	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0096339_12	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0096339_12	UniRef90	UniRef90_UPI001904AEF2	conserved phage C-terminal domain-containing protein	NA
UHGV-0096339_12	eggNOG-mapper	632245.CLP_2217	DnaD domain protein	NA
UHGV-0096339_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0096339_13	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0096339_13	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0096339_13	UniRef90	UniRef90_S6ELL9	Replicative DNA helicase	NA
UHGV-0096339_13	eggNOG-mapper	1280689.AUJC01000011_gene1502	Participates in initiation and elongation during chromosome replication	NA
UHGV-0096339_13	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0096339_13	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0096339_13	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0096339_13	COG	COG0305	Replicative DNA helicase	NA
UHGV-0096339_13	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0096339_17	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0096339_17	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0096339_17	UniRef90	UniRef90_A0A6N3GNP2	Single-stranded DNA-binding protein	NA
UHGV-0096339_17	eggNOG-mapper	457396.CSBG_03291	Single-stranded DNA-binding protein	NA
UHGV-0096339_17	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0096339_17	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0096339_17	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0096339_17	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0096339_17	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0096339_19	PHROG	phrog_6072	NA	unknown function
UHGV-0096339_22	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0096339_22	UniRef90	UniRef90_UPI00105628A4	nitroreductase	NA
UHGV-0096339_22	eggNOG-mapper	457396.CSBG_01039	NA	NA
UHGV-0096339_22	Structural annotation	PF08281, MF_00674, TIGR01636, COG1191	NA	NA
UHGV-0096339_23	PHROG	phrog_5978	NA	unknown function
UHGV-0096339_23	UniRef90	UniRef90_A0A5N7IUD9	Fic family protein	NA
UHGV-0096339_23	eggNOG-mapper	37659.JNLN01000001_gene1189	Fic/DOC family	NA
UHGV-0096339_23	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0096339_23	COG	COG3177	Fic family protein	NA
UHGV-0096339_23	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0096339_24	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0096339_24	PHROG	phrog_216	integrase	integration and excision
UHGV-0096339_24	UniRef90	UniRef90_UPI000C0698D3	tyrosine-type recombinase/integrase	NA
UHGV-0096339_24	eggNOG-mapper	1280689.AUJC01000011_gene1512	Integrase	NA
UHGV-0096339_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0096339_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0096339_24	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0096339_25	eggNOG-mapper	1280689.AUJC01000011_gene1513	NA	NA
UHGV-0096339_26	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0096339_26	UniRef90	UniRef90_A0A2Z4WAV3	HNH domain-containing protein	NA
UHGV-0096339_26	eggNOG-mapper	632245.CLP_2621	HNH endonuclease	NA
UHGV-0096339_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0096339_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0096339_26	Structural annotation	PF05766	NA	NA
UHGV-0096339_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0096339_27	UniRef90	UniRef90_A0A1M5TFS2	Phage terminase, small subunit, putative, P27 family	NA
UHGV-0096339_27	eggNOG-mapper	903814.ELI_3118	Phage terminase, small subunit	NA
UHGV-0096339_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0096339_27	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0096339_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0096339_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0096339_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0096339_28	UniRef90	UniRef90_A0A174AFR3	Terminase	NA
UHGV-0096339_28	eggNOG-mapper	394503.Ccel_2960	Terminase	NA
UHGV-0096339_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0096339_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0096339_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0096339_28	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0096339_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0096339_30	UniRef90	UniRef90_UPI00099C25F9	phage portal protein	NA
UHGV-0096339_30	eggNOG-mapper	1262449.CP6013_1040	Phage portal protein, HK97 family	NA
UHGV-0096339_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0096339_30	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0096339_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0096339_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0096339_31	KOfam	K06904	NA	NA
UHGV-0096339_31	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0096339_31	UniRef90	UniRef90_A0A1S8S9J5	Caudovirus prohead protease	NA
UHGV-0096339_31	eggNOG-mapper	1262449.CP6013_1041	Phage prohead protease, HK97 family	NA
UHGV-0096339_31	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0096339_31	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0096339_31	COG	COG3740	Phage head maturation protease	NA
UHGV-0096339_31	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0096339_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-0096339_32	UniRef90	UniRef90_UPI0012B9D8D4	phage major capsid protein	NA
UHGV-0096339_32	eggNOG-mapper	632245.CLP_2615	Phage major capsid protein, HK97 family	NA
UHGV-0096339_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0096339_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0096339_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0096339_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0096339_33	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0096339_33	UniRef90	UniRef90_UPI001009B3DD	head-tail connector protein	NA
UHGV-0096339_33	eggNOG-mapper	1195236.CTER_5110	Phage gp6-like head-tail connector protein	NA
UHGV-0096339_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0096339_33	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0096339_33	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0096339_34	PHROG	phrog_25	head closure Hc1	connector
UHGV-0096339_34	UniRef90	UniRef90_UPI0004D41982	phage head closure protein	NA
UHGV-0096339_34	eggNOG-mapper	1262449.CP6013_1044	Phage head-tail joining protein	NA
UHGV-0096339_34	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0096339_34	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0096339_34	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0096339_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0096339_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0096339_35	UniRef90	UniRef90_UPI00177BAF9F	HK97 gp10 family phage protein	NA
UHGV-0096339_35	eggNOG-mapper	1280689.AUJC01000011_gene1525	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0096339_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0096339_35	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0096339_35	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0096339_36	PHROG	phrog_78	tail terminator	connector
UHGV-0096339_36	UniRef90	UniRef90_UPI0005D10765	NA	NA
UHGV-0096339_36	eggNOG-mapper	203119.Cthe_1714	NA	NA
UHGV-0096339_36	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0096339_37	PHROG	phrog_88	major tail protein	tail
UHGV-0096339_37	UniRef90	UniRef90_L1QK33	Phage major tail protein, phi13 family	NA
UHGV-0096339_37	eggNOG-mapper	545697.HMPREF0216_00917	phage major tail protein	NA
UHGV-0096339_37	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0096339_37	COG	COG5492	NA	NA
UHGV-0096339_37	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0096339_38	PHROG	phrog_2115	tail protein	tail
UHGV-0096339_38	UniRef90	UniRef90_A0A4V2V083	Tail assembly chaperone	NA
UHGV-0096339_38	eggNOG-mapper	203119.Cthe_1710	NA	NA
UHGV-0096339_38	Structural annotation	PF11836	NA	NA
UHGV-0096339_39	PHROG	phrog_23464	NA	unknown function
UHGV-0096339_39	UniRef90	UniRef90_A0A1I6EGT7	Phage-related minor tail protein	NA
UHGV-0096339_39	eggNOG-mapper	1444310.JANV01000001_gene4374	Phage tail tape measure protein	NA
UHGV-0096339_39	COG	COG3953	SLT domain protein	NA
UHGV-0096339_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0096339_40	UniRef90	UniRef90_UPI00189728CA	phage tail family protein	NA
UHGV-0096339_40	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-0096339_40	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0096339_40	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0096339_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-0096339_40	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0096339_41	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0096339_41	UniRef90	UniRef90_UPI0018980371	phage tail protein	NA
UHGV-0096339_41	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-0096339_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0096339_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0096339_41	COG	COG4926	Phage-related protein	NA
UHGV-0096339_41	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0096339_42	eggNOG-mapper	33035.JPJF01000023_gene3230	Phage minor structural protein	NA
UHGV-0096339_42	COG	COG4926	Phage-related protein	NA
UHGV-0096339_44	PHROG	phrog_8908	NA	unknown function
UHGV-0096339_44	eggNOG-mapper	1234664.AMRO01000024_gene1821	NA	NA
UHGV-0096339_45	PHROG	phrog_28838	NA	unknown function
UHGV-0096339_45	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0096339_45	COG	COG5434	Polygalacturonase	NA
UHGV-0096339_46	KOfam	K13663	gumF; acyltransferase [EC:2.3.1.-]	NA
UHGV-0096339_46	UniRef90	UniRef90_A0A512TQB0	O-acetyltransferase	NA
UHGV-0096339_46	eggNOG-mapper	596324.TREVI0001_2599	Acyltransferase	NA
UHGV-0096339_46	Pfam	PF01757	Acyltransferase family	Acyl_transf_3
UHGV-0096339_46	COG	COG3594	Fucose 4-O-acetylase or related acetyltransferase	NA
UHGV-0096339_46	Structural annotation	PF01757, MF_01066, NF042426, COG3274	NA	NA
UHGV-0096339_47	UniRef90	UniRef90_UPI0004AD9B15	GNAT family N-acetyltransferase	NA
UHGV-0096339_47	eggNOG-mapper	1414720.CBYM010000001_gene712	NA	NA
UHGV-0096339_48	eggNOG-mapper	1301100.HG529241_gene7189	NA	NA
UHGV-0096339_49	PHROG	phrog_1863	NA	unknown function
UHGV-0096339_49	eggNOG-mapper	1414720.CBYM010000002_gene554	NA	NA
UHGV-0096339_50	PHROG	phrog_20258	NA	unknown function
UHGV-0096339_50	eggNOG-mapper	1280689.AUJC01000011_gene1537	NA	NA