UHGV-0096346

Genome information

vOTU vOTU-042006

Genome length 31,532 bps

CDS count 48

Completeness 83.04% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096346
vOTU ID	vOTU-042006
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_211718
BioSample	SAMEA3449233
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.85
Jumbo phage	No

Genome content
Genome length	31,532 bps
GC content	38.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.97%
Average CDS length	608.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096346_1	UniRef90	UniRef90_B0NDH9	XkdX family protein	NA
UHGV-0096346_1	eggNOG-mapper	411468.CLOSCI_01507	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0096346_1	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0096346_1	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0096346_2	PHROG	phrog_20201	NA	unknown function
UHGV-0096346_3	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0096346_3	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0096346_3	UniRef90	UniRef90_UPI001EDD71BD	RNA-directed DNA polymerase	NA
UHGV-0096346_3	eggNOG-mapper	411468.CLOSCI_01505	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0096346_3	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0096346_3	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0096346_3	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0096346_3	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0096346_4	PHROG	phrog_5302	tail protein	tail
UHGV-0096346_4	eggNOG-mapper	742741.HMPREF9475_00438	NA	NA
UHGV-0096346_4	Structural annotation	COG1262	NA	NA
UHGV-0096346_5	PHROG	phrog_1220	head protein	head and packaging
UHGV-0096346_5	UniRef90	UniRef90_A0A2T0B3H8	BppU_IgG domain-containing protein	NA
UHGV-0096346_5	eggNOG-mapper	1211817.CCAT010000079_gene1381	COG NOG18825 non supervised orthologous group	NA
UHGV-0096346_5	Structural annotation	PF20747	NA	NA
UHGV-0096346_6	PHROG	phrog_538	minor tail protein	tail
UHGV-0096346_6	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0096346_6	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0096346_6	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0096346_6	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0096346_7	PHROG	phrog_36410	NA	unknown function
UHGV-0096346_7	UniRef90	UniRef90_UPI001570DCE2	phage tail family protein	NA
UHGV-0096346_7	eggNOG-mapper	536232.CLM_2922	Phage tail protein	NA
UHGV-0096346_7	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0096346_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0096346_7	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0096346_8	KOfam	K20361	USO1; intracellular protein transport protein USO1	NA
UHGV-0096346_8	PHROG	phrog_23464	NA	unknown function
UHGV-0096346_8	UniRef90	UniRef90_A0A318XNK8	Phage-related minor tail protein	NA
UHGV-0096346_8	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0096346_8	COG	COG5412	Phage-related protein	NA
UHGV-0096346_8	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0096346_10	PHROG	phrog_88	major tail protein	tail
UHGV-0096346_10	UniRef90	UniRef90_A0A3D5P849	Big_5 domain-containing protein	NA
UHGV-0096346_10	eggNOG-mapper	1403313.AXBR01000002_gene4319	phage major tail protein, phi13 family	NA
UHGV-0096346_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0096346_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0096346_11	Structural annotation	PF05657	NA	NA
UHGV-0096346_12	Structural annotation	TIGR01725	NA	NA
UHGV-0096346_13	UniRef90	UniRef90_UPI00156F5992	head-tail adaptor protein	NA
UHGV-0096346_13	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0096346_13	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0096346_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0096346_14	UniRef90	UniRef90_UPI001D07D95D	phage head-tail connector protein	NA
UHGV-0096346_14	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0096346_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0096346_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0096346_15	UniRef90	UniRef90_A0A1I6ECH3	Phage major capsid protein, HK97 family	NA
UHGV-0096346_15	eggNOG-mapper	441768.ACL_0612	Phage capsid family	NA
UHGV-0096346_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0096346_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0096346_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0096346_16	KOfam	K06904	NA	NA
UHGV-0096346_16	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0096346_16	UniRef90	UniRef90_A0A6N2W9T5	Caudovirus prohead protease	NA
UHGV-0096346_16	eggNOG-mapper	1123288.SOV_2c03620	Caudovirus prohead serine protease	NA
UHGV-0096346_16	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0096346_16	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0096346_16	COG	COG3740	Phage head maturation protease	NA
UHGV-0096346_16	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0096346_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0096346_17	UniRef90	UniRef90_UPI0005C7E1AD	phage portal protein	NA
UHGV-0096346_17	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0096346_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0096346_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0096346_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0096346_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0096346_18	UniRef90	UniRef90_UPI001D10BBFC	terminase large subunit	NA
UHGV-0096346_18	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-0096346_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0096346_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0096346_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0096346_18	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0096346_19	PHROG	phrog_1066	NA	unknown function
UHGV-0096346_20	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0096346_20	UniRef90	UniRef90_UPI001D11694A	HNH endonuclease	NA
UHGV-0096346_20	eggNOG-mapper	1157490.EL26_20750	HNH endonuclease	NA
UHGV-0096346_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0096346_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0096346_20	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0096346_22	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0096346_22	UniRef90	UniRef90_UPI00100A781C	transposase	NA
UHGV-0096346_22	eggNOG-mapper	469618.FVAG_00793	transposase activity	NA
UHGV-0096346_22	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0096346_22	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0096346_22	Structural annotation	PF07141	NA	NA
UHGV-0096346_23	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0096346_23	PHROG	phrog_435	endolysin	lysis
UHGV-0096346_23	UniRef90	UniRef90_A0A358PLS7	MurNAc-LAA domain-containing protein	NA
UHGV-0096346_23	eggNOG-mapper	742723.HMPREF9477_00888	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0096346_23	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0096346_23	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0096346_23	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0096346_25	PHROG	phrog_1129	holin	lysis
UHGV-0096346_25	UniRef90	UniRef90_UPI000485FFFD	phage holin family protein	NA
UHGV-0096346_25	eggNOG-mapper	1304866.K413DRAFT_0135	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0096346_25	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0096346_25	Structural annotation	PF16079	NA	NA
UHGV-0096346_26	UniRef90	UniRef90_A0A6N4TPD2	HTH luxR-type domain-containing protein	NA
UHGV-0096346_26	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0096346_29	Structural annotation	PF10879	NA	NA
UHGV-0096346_31	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0096346_31	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0096346_31	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0096346_34	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0096346_34	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0096346_34	UniRef90	UniRef90_A0A6N3DEG0	PAPS_reduct domain-containing protein	NA
UHGV-0096346_34	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0096346_34	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0096346_34	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0096346_34	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0096346_34	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0096346_36	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0096346_36	PHROG	phrog_15982	NA	unknown function
UHGV-0096346_36	UniRef90	UniRef90_A0A7X3SK65	NA	NA
UHGV-0096346_36	eggNOG-mapper	742741.HMPREF9475_00414	NA	NA
UHGV-0096346_36	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0096346_36	Pfam	PF12961	NA	DUF3850
UHGV-0096346_36	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0096346_36	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0096346_37	PHROG	phrog_37044	NA	unknown function
UHGV-0096346_37	eggNOG-mapper	411468.CLOSCI_01479	NA	NA
UHGV-0096346_38	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0096346_38	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0096346_38	UniRef90	UniRef90_A0A412T732	ParA family protein	NA
UHGV-0096346_38	eggNOG-mapper	411468.CLOSCI_01475	Cellulose biosynthesis protein BcsQ	NA
UHGV-0096346_38	Pfam	PF13614	AAA domain	AAA_31
UHGV-0096346_38	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0096346_38	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0096346_39	PHROG	phrog_20014	NA	unknown function
UHGV-0096346_39	eggNOG-mapper	411470.RUMGNA_02042	NA	NA
UHGV-0096346_40	PHROG	phrog_824	NA	unknown function
UHGV-0096346_40	UniRef90	UniRef90_A0A412Q219	VRR-NUC domain-containing protein	NA
UHGV-0096346_40	eggNOG-mapper	411468.CLOSCI_01472	VRR_NUC	NA
UHGV-0096346_40	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0096346_41	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0096346_41	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0096346_41	eggNOG-mapper	742741.HMPREF9475_00404	NA	NA
UHGV-0096346_41	Structural annotation	PF21578	NA	NA
UHGV-0096346_42	PHROG	phrog_6058	NA	unknown function
UHGV-0096346_42	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-0096346_42	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0096346_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0096346_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0096346_44	UniRef90	UniRef90_UPI0015714871	helix-turn-helix domain-containing protein	NA
UHGV-0096346_44	eggNOG-mapper	1235792.C808_00054	Helix-turn-helix XRE-family like proteins	NA
UHGV-0096346_44	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0096346_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0096346_44	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0096346_46	UniRef90	UniRef90_UPI00156E34B2	helix-turn-helix domain-containing protein	NA
UHGV-0096346_46	eggNOG-mapper	1280698.AUJS01000007_gene1001	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0096346_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096346_46	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0096346_47	PHROG	phrog_5783	NA	unknown function
UHGV-0096346_47	UniRef90	UniRef90_UPI00073E7BB6	NYN domain-containing protein	NA
UHGV-0096346_47	eggNOG-mapper	1410676.JNKL01000034_gene1850	NYN domain	NA
UHGV-0096346_47	Pfam	PF01936	NYN domain	NYN
UHGV-0096346_47	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0096346_47	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0096346_48	KOfam	K14059	int; integrase	NA
UHGV-0096346_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0096346_48	UniRef90	UniRef90_A0A844DXY4	Tyrosine-type recombinase/integrase	NA
UHGV-0096346_48	eggNOG-mapper	1256908.HMPREF0373_01612	Phage integrase family	NA
UHGV-0096346_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0096346_48	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0096346_48	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA