UHGV-0096352

Genome information

Genome length 45,340 bps

CDS count 65

Completeness 84.51% (medium-quality)

geNomad score 0.9718

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096352
vOTU ID	vOTU-024138
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_217494
BioSample	SAMEA3541517
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9718
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.58
Jumbo phage	No

Genome content
Genome length	45,340 bps
GC content	37.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	93.43%
Average CDS length	654.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096352_1	KOfam	K14059	int; integrase	NA
UHGV-0096352_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0096352_1	UniRef90	UniRef90_R6MY37	Putative integrase	NA
UHGV-0096352_1	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0096352_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0096352_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0096352_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0096352_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0096352_2	PHROG	phrog_14556	NA	unknown function
UHGV-0096352_4	PHROG	phrog_87	metallo-protease	other
UHGV-0096352_4	UniRef90	UniRef90_R6NN10	Peptidase_M78 domain-containing protein	NA
UHGV-0096352_4	eggNOG-mapper	536232.CLM_2576	IrrE N-terminal-like domain	NA
UHGV-0096352_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0096352_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0096352_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0096352_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0096352_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0096352_5	UniRef90	UniRef90_R6MT43	DNA-binding helix-turn-helix protein	NA
UHGV-0096352_5	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0096352_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0096352_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096352_5	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0096352_5	Structural annotation	PF12844, MF_00584, NF041951, COG1476	NA	NA
UHGV-0096352_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0096352_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0096352_6	UniRef90	UniRef90_A0A847PN47	Helix-turn-helix transcriptional regulator	NA
UHGV-0096352_6	eggNOG-mapper	718252.FP2_16270	sequence-specific DNA binding	NA
UHGV-0096352_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0096352_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096352_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0096352_6	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0096352_9	PHROG	phrog_3150	NA	unknown function
UHGV-0096352_9	eggNOG-mapper	580331.Thit_1411	NA	NA
UHGV-0096352_11	PHROG	phrog_5070	NA	unknown function
UHGV-0096352_11	UniRef90	UniRef90_C6L9Y5	Bacterial transferase hexapeptide repeat protein	NA
UHGV-0096352_11	eggNOG-mapper	478749.BRYFOR_05427	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0096352_11	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0096352_11	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0096352_11	Structural annotation	MF_01691, NF040481	NA	NA
UHGV-0096352_14	Structural annotation	PF10922	NA	NA
UHGV-0096352_15	Structural annotation	PF17574	NA	NA
UHGV-0096352_16	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0096352_16	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0096352_16	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0096352_17	PHROG	phrog_1029	NA	unknown function
UHGV-0096352_17	UniRef90	UniRef90_M1QIB9	Phage-related protein	NA
UHGV-0096352_17	eggNOG-mapper	1078085.HMPREF1210_01165	NA	NA
UHGV-0096352_17	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0096352_19	Structural annotation	PF09943	NA	NA
UHGV-0096352_20	PHROG	phrog_674	NA	unknown function
UHGV-0096352_20	UniRef90	UniRef90_A0A7X5HYD7	NA	NA
UHGV-0096352_20	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0096352_20	Pfam	PF07083	NA	DUF1351
UHGV-0096352_20	Structural annotation	PF07083	NA	NA
UHGV-0096352_21	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0096352_21	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0096352_21	UniRef90	UniRef90_UPI001D034282	recombinase RecT	NA
UHGV-0096352_21	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0096352_21	Pfam	PF03837	RecT family	RecT
UHGV-0096352_21	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0096352_21	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0096352_21	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0096352_22	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0096352_22	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0096352_22	UniRef90	UniRef90_A0A7X8XIL0	MBL fold metallo-hydrolase	NA
UHGV-0096352_22	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0096352_22	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0096352_22	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0096352_22	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0096352_23	PHROG	phrog_398	NA	unknown function
UHGV-0096352_23	UniRef90	UniRef90_UPI00137A6F13	putative HNHc nuclease	NA
UHGV-0096352_23	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0096352_23	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0096352_23	Structural annotation	PF16784	NA	NA
UHGV-0096352_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0096352_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0096352_25	UniRef90	UniRef90_R6MUJ6	Single-stranded DNA-binding protein	NA
UHGV-0096352_25	eggNOG-mapper	246199.CUS_6065	Single-stranded DNA-binding protein	NA
UHGV-0096352_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0096352_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0096352_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0096352_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0096352_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0096352_26	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0096352_26	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0096352_26	UniRef90	UniRef90_UPI00137AD09D	NA	NA
UHGV-0096352_26	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0096352_26	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0096352_26	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0096352_26	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0096352_26	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0096352_26	Structural annotation	PF14297, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0096352_27	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0096352_27	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0096352_27	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0096352_31	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0096352_31	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0096352_31	UniRef90	UniRef90_A0A1C5STJ7	MazG domain-containing protein	NA
UHGV-0096352_31	eggNOG-mapper	658655.HMPREF0988_00885	NA	NA
UHGV-0096352_31	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0096352_31	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0096352_31	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0096352_31	Structural annotation	PF14354, COG3478	NA	NA
UHGV-0096352_32	PHROG	phrog_419	NA	unknown function
UHGV-0096352_32	UniRef90	UniRef90_A0A060QMU0	NA	NA
UHGV-0096352_32	eggNOG-mapper	1123312.KB904569_gene346	NA	NA
UHGV-0096352_32	Structural annotation	PF14083	NA	NA
UHGV-0096352_33	PHROG	phrog_6802	NA	unknown function
UHGV-0096352_33	eggNOG-mapper	1256908.HMPREF0373_03028	NA	NA
UHGV-0096352_34	KOfam	K03040	rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]	NA
UHGV-0096352_34	UniRef90	UniRef90_A0A416CVN3	RNA_pol_A_CTD domain-containing protein	NA
UHGV-0096352_34	eggNOG-mapper	1410638.JHXJ01000004_gene2091	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	NA
UHGV-0096352_34	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-0096352_34	COG	COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	NA
UHGV-0096352_39	UniRef90	UniRef90_A0A7X2P872	Ribbon-helix-helix protein, CopG family	NA
UHGV-0096352_39	eggNOG-mapper	1095750.HMPREF9970_2261	NA	NA
UHGV-0096352_39	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0096352_40	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0096352_40	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0096352_43	Structural annotation	PF06056, COG2963	NA	NA
UHGV-0096352_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0096352_44	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0096352_44	UniRef90	UniRef90_A0A355JD48	Terminase_3 domain-containing protein	NA
UHGV-0096352_44	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0096352_44	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0096352_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-0096352_44	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0096352_45	UniRef90	UniRef90_A0A7X6VKT0	C2H2-type domain-containing protein	NA
UHGV-0096352_45	Structural annotation	PF21169	NA	NA
UHGV-0096352_46	PHROG	phrog_156	portal protein	head and packaging
UHGV-0096352_46	eggNOG-mapper	588581.Cpap_1526	NA	NA
UHGV-0096352_46	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0096352_48	PHROG	phrog_14242	major head protein	head and packaging
UHGV-0096352_48	UniRef90	UniRef90_A0A355JD53	Phage major capsid protein	NA
UHGV-0096352_48	eggNOG-mapper	588581.Cpap_1528	NA	NA
UHGV-0096352_48	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-0096352_48	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-0096352_50	Structural annotation	PF20387	NA	NA
UHGV-0096352_51	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0096352_51	eggNOG-mapper	1449126.JQKL01000002_gene1688	NA	NA
UHGV-0096352_54	Structural annotation	PF09144, NF038393	NA	NA
UHGV-0096352_56	UniRef90	UniRef90_R6MQV2	Tail Collar domain protein	NA
UHGV-0096352_56	Structural annotation	PF01696, NF000420, COG3420	NA	NA
UHGV-0096352_58	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0096352_58	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0096352_58	eggNOG-mapper	1536769.P40081_01140	NA	NA
UHGV-0096352_58	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0096352_59	PHROG	phrog_37799	NA	unknown function
UHGV-0096352_59	UniRef90	UniRef90_R6NA79	Toxin secretion/phage lysis holin	NA
UHGV-0096352_59	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-0096352_59	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0096352_59	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0096352_59	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0096352_59	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0096352_60	PHROG	phrog_774	NA	unknown function
UHGV-0096352_60	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0096352_61	PHROG	phrog_918	NA	unknown function
UHGV-0096352_61	UniRef90	UniRef90_UPI0008D94115	NA	NA
UHGV-0096352_61	eggNOG-mapper	357809.Cphy_2966	NA	NA
UHGV-0096352_61	Pfam	PF19791	NA	DUF6275
UHGV-0096352_61	Structural annotation	PF19791	NA	NA
UHGV-0096352_62	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0096352_62	PHROG	phrog_435	endolysin	lysis
UHGV-0096352_62	UniRef90	UniRef90_A0A1C5N460	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0096352_62	eggNOG-mapper	272563.CD630_09720	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0096352_62	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0096352_62	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0096352_62	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0096352_63	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0096352_63	PHROG	phrog_329	minor tail protein	tail
UHGV-0096352_63	UniRef90	UniRef90_A0A355JE00	Peptidase C51 domain-containing protein	NA
UHGV-0096352_63	eggNOG-mapper	1487921.DP68_07190	NLP P60 protein	NA
UHGV-0096352_63	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0096352_63	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0096352_63	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0096352_65	PHROG	phrog_13543	NA	unknown function
UHGV-0096352_65	eggNOG-mapper	1273707.L7TID4_9CAUD	Methyltransferase small domain	NA
UHGV-0096352_65	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-0096352_65	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78