UHGV-0096389

Genome information

Genome length 49,001 bps

CDS count 64

Completeness 90.12% (high-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096389
vOTU ID	vOTU-060762
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_208403
BioSample	SAMEA3449196
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.12% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.41
Jumbo phage	No

Genome content
Genome length	49,001 bps
GC content	55.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	94.25%
Average CDS length	724.45 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096389_1	eggNOG-mapper	718252.FP2_01010	Single-strand binding protein family	NA
UHGV-0096389_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0096389_2	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0096389_2	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0096389_2	UniRef90	UniRef90_D4K2R2	DnaD and phage-associated domain	NA
UHGV-0096389_2	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0096389_2	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0096389_2	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0096389_2	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0096389_2	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0096389_2	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0096389_3	Structural annotation	PF11417	NA	NA
UHGV-0096389_4	PHROG	phrog_25245	NA	unknown function
UHGV-0096389_4	UniRef90	UniRef90_A0A3A6E9N3	3D domain-containing protein	NA
UHGV-0096389_4	eggNOG-mapper	718252.FP2_00980	3D domain	NA
UHGV-0096389_4	Pfam	PF06725	3D domain	3D
UHGV-0096389_4	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0096389_4	Structural annotation	PF06725, NF040677, COG3584	NA	NA
UHGV-0096389_5	PHROG	phrog_24484	NA	unknown function
UHGV-0096389_6	PHROG	phrog_7566	NA	unknown function
UHGV-0096389_6	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0096389_7	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0096389_7	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0096389_7	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0096389_8	PHROG	phrog_36563	NA	unknown function
UHGV-0096389_8	UniRef90	UniRef90_A0A845SWS4	Ftsk_gamma domain-containing protein	NA
UHGV-0096389_8	eggNOG-mapper	718252.FP2_00940	NA	NA
UHGV-0096389_8	Structural annotation	PF09397, MF_01586, NF006814, COG1846	NA	NA
UHGV-0096389_9	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0096389_9	PHROG	phrog_5696	NA	unknown function
UHGV-0096389_9	UniRef90	UniRef90_A0A1Q6PTX9	N6_Mtase domain-containing protein	NA
UHGV-0096389_9	eggNOG-mapper	718252.FP2_00930	N-6 DNA Methylase	NA
UHGV-0096389_9	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0096389_9	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0096389_9	Structural annotation	PF05185, TIGR00497, COG0286	NA	NA
UHGV-0096389_10	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0096389_10	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0096389_10	UniRef90	UniRef90_A0A3A6EUA9	ParB domain-containing protein	NA
UHGV-0096389_10	eggNOG-mapper	718252.FP2_00920	ParB-like nuclease domain	NA
UHGV-0096389_10	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0096389_10	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0096389_10	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0096389_10	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0096389_16	PHROG	phrog_3136	NA	unknown function
UHGV-0096389_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0096389_17	PHROG	phrog_3136	NA	unknown function
UHGV-0096389_17	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0096389_17	eggNOG-mapper	1235792.C808_00630	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0096389_17	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0096389_17	Structural annotation	PF04033, COG4933	NA	NA
UHGV-0096389_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0096389_19	UniRef90	UniRef90_UPI00189CA0E1	RNA polymerase subunit sigma-24	NA
UHGV-0096389_19	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0096389_19	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0096389_20	eggNOG-mapper	718252.FP2_00810	NA	NA
UHGV-0096389_20	Structural annotation	PF00474, MF_01426, TIGR00912, COG0591	NA	NA
UHGV-0096389_21	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0096389_21	UniRef90	UniRef90_A0A3A9I8I3	PAPS_reduct domain-containing protein	NA
UHGV-0096389_21	eggNOG-mapper	1408437.JNJN01000030_gene1072	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0096389_21	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0096389_21	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0096389_22	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0096389_22	UniRef90	UniRef90_A0A3A6EE00	ParB domain-containing protein	NA
UHGV-0096389_22	eggNOG-mapper	718252.FP2_00800	DNA binding	NA
UHGV-0096389_22	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0096389_22	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0096389_22	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0096389_22	Structural annotation	PF02195, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0096389_23	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0096389_23	UniRef90	UniRef90_A0A2A7AF71	PAPS_reduct domain-containing protein	NA
UHGV-0096389_23	eggNOG-mapper	718252.FP2_00780	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0096389_23	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0096389_23	COG	COG3969	NA	NA
UHGV-0096389_23	Structural annotation	PF01507, MF_00063, NF006327, COG3969	NA	NA
UHGV-0096389_24	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0096389_24	PHROG	phrog_2159	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0096389_24	UniRef90	UniRef90_D4K2P2	Predicted transcriptional regulators	NA
UHGV-0096389_24	eggNOG-mapper	718252.FP2_00770	ParB-like nuclease domain	NA
UHGV-0096389_24	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0096389_24	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0096389_24	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0096389_25	PHROG	phrog_918	NA	unknown function
UHGV-0096389_25	UniRef90	UniRef90_UPI00115A7D93	NA	NA
UHGV-0096389_25	eggNOG-mapper	469618.FVAG_01307	NA	NA
UHGV-0096389_25	Pfam	PF19791	NA	DUF6275
UHGV-0096389_25	Structural annotation	PF19791	NA	NA
UHGV-0096389_26	PHROG	phrog_2412	NA	unknown function
UHGV-0096389_26	UniRef90	UniRef90_A0A150NN47	NA	NA
UHGV-0096389_26	eggNOG-mapper	12402.Q708N5_9CAUD	NA	NA
UHGV-0096389_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0096389_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0096389_27	UniRef90	UniRef90_A0A373MY72	PBSX family phage terminase large subunit	NA
UHGV-0096389_27	eggNOG-mapper	1120746.CCNL01000014_gene2093	DNA packaging	NA
UHGV-0096389_27	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0096389_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0096389_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0096389_27	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0096389_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0096389_28	UniRef90	UniRef90_A0A1H7MQM5	Phage portal protein, putative, A118 family	NA
UHGV-0096389_28	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0096389_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0096389_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0096389_29	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0096389_29	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0096389_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0096389_29	COG	COG2369	NA	NA
UHGV-0096389_29	Structural annotation	PF06152	NA	NA
UHGV-0096389_31	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0096389_31	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0096389_31	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0096389_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0096389_32	UniRef90	UniRef90_A0A1H7MPG5	Phage minor structural protein GP20	NA
UHGV-0096389_32	eggNOG-mapper	663278.Ethha_0093	NA	NA
UHGV-0096389_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0096389_32	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0096389_33	UniRef90	UniRef90_A0A0M2NI16	S-l_SbsC_C domain-containing protein	NA
UHGV-0096389_33	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0096389_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0096389_35	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0096389_36	PHROG	phrog_3366	NA	unknown function
UHGV-0096389_36	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0096389_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0096389_37	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0096389_37	eggNOG-mapper	999413.HMPREF1094_00212	Minor capsid protein	NA
UHGV-0096389_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0096389_37	Structural annotation	PF11114	NA	NA
UHGV-0096389_38	PHROG	phrog_3266	tail completion	connector
UHGV-0096389_38	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0096389_38	Structural annotation	PF12691	NA	NA
UHGV-0096389_39	PHROG	phrog_3099	NA	unknown function
UHGV-0096389_39	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0096389_39	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0096389_40	PHROG	phrog_11299	NA	unknown function
UHGV-0096389_40	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0096389_41	PHROG	phrog_706	NA	unknown function
UHGV-0096389_41	UniRef90	UniRef90_A0A1H7MNA7	Bacteriophage Gp15 protein	NA
UHGV-0096389_41	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0096389_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0096389_41	Structural annotation	PF06854	NA	NA
UHGV-0096389_42	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0096389_42	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0096389_42	COG	COG5412	Phage-related protein	NA
UHGV-0096389_43	PHROG	phrog_1194	NA	unknown function
UHGV-0096389_43	eggNOG-mapper	1232443.BAIA02000078_gene17	NA	NA
UHGV-0096389_43	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0096389_44	PHROG	phrog_6616	tail protein	tail
UHGV-0096389_44	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0096389_44	Structural annotation	PF16466, NF033848, COG4379	NA	NA
UHGV-0096389_45	KOfam	K21449	ata, sadA, emaA; trimeric autotransporter adhesin	NA
UHGV-0096389_45	PHROG	phrog_14959	NA	unknown function
UHGV-0096389_45	UniRef90	UniRef90_R5G2B7	NA	NA
UHGV-0096389_45	eggNOG-mapper	657322.FPR_22010	NA	NA
UHGV-0096389_45	Pfam	PF19789	NA	DUF6273
UHGV-0096389_46	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0096389_48	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0096389_48	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0096389_48	UniRef90	UniRef90_A0A1G5AFK2	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0096389_48	eggNOG-mapper	665950.HMPREF1025_01556	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0096389_48	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0096389_48	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0096389_48	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0096389_48	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0096389_50	PHROG	phrog_1382	NA	unknown function
UHGV-0096389_50	eggNOG-mapper	1410650.JHWL01000003_gene2818	NA	NA
UHGV-0096389_51	PHROG	phrog_37604	NA	unknown function
UHGV-0096389_51	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-0096389_52	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0096389_52	PHROG	phrog_2649	endolysin	lysis
UHGV-0096389_52	UniRef90	UniRef90_UPI001A9BC0D1	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-0096389_52	eggNOG-mapper	926561.KB900622_gene630	Peptidase M15A	NA
UHGV-0096389_52	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0096389_52	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0096389_52	COG	COG3108	NA	NA
UHGV-0096389_52	Structural annotation	PF05951, PF01471, COG3108	NA	NA
UHGV-0096389_53	PHROG	phrog_15303	NA	unknown function
UHGV-0096389_54	eggNOG-mapper	1232443.BAIA02000032_gene1908	NA	NA
UHGV-0096389_55	eggNOG-mapper	742740.HMPREF9474_02999	NA	NA
UHGV-0096389_60	PHROG	phrog_38037	NA	unknown function
UHGV-0096389_62	UniRef90	UniRef90_A0A416VIT4	XRE family transcriptional regulator	NA
UHGV-0096389_62	eggNOG-mapper	1408437.JNJN01000040_gene204	NA	NA
UHGV-0096389_62	Structural annotation	PF13443, NF000090, COG1396	NA	NA
UHGV-0096389_63	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0096389_63	UniRef90	UniRef90_A0A2A7AFF5	Transcriptional regulator	NA
UHGV-0096389_63	eggNOG-mapper	1235802.C823_05610	helix-turn-helix	NA
UHGV-0096389_63	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0096389_63	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0096389_64	UniRef90	UniRef90_A0A2A6ZNH3	NA	NA