UHGV-0096507

Genome information

Genome length 44,518 bps

CDS count 67

Completeness 97.75% (high-quality)

geNomad score 0.9462

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096507
vOTU ID	vOTU-013002
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_214913
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.75% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9462
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.64
Jumbo phage	No

Genome content
Genome length	44,518 bps
GC content	29.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	90.53%
Average CDS length	604.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096507_1	KOfam	K11991	tadA; tRNA(adenine34) deaminase [EC:3.5.4.33]	NA
UHGV-0096507_1	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0096507_1	UniRef90	UniRef90_H3K5H2	CMP/dCMP-type deaminase domain-containing protein	NA
UHGV-0096507_1	eggNOG-mapper	1122217.KB899584_gene78	MafB19-like deaminase	NA
UHGV-0096507_1	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-0096507_1	COG	COG0590	tRNA(Arg) A34 adenosine deaminase TadA	NA
UHGV-0096507_1	Structural annotation	PF14437, MF_00972, NF008113, COG0590	NA	NA
UHGV-0096507_2	KOfam	K02824	uraA, pyrP; uracil permease	NA
UHGV-0096507_2	PHROG	phrog_20031	NA	unknown function
UHGV-0096507_2	UniRef90	UniRef90_A0A239TSJ7	Uracil transporter	NA
UHGV-0096507_2	eggNOG-mapper	1122217.KB899584_gene79	permease	NA
UHGV-0096507_2	Pfam	PF00860	Permease family	Xan_ur_permease
UHGV-0096507_2	NCBIFam	NF007995.0	uracil permease	NA
UHGV-0096507_2	COG	COG2233	Xanthine/uracil permease	NA
UHGV-0096507_2	Structural annotation	PF00860, NF007995, COG2233	NA	NA
UHGV-0096507_3	KOfam	K14059	int; integrase	NA
UHGV-0096507_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0096507_3	UniRef90	UniRef90_A0A7X7U6S9	Site-specific integrase	NA
UHGV-0096507_3	eggNOG-mapper	1262914.BN533_00811	Belongs to the 'phage' integrase family	NA
UHGV-0096507_3	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0096507_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0096507_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0096507_3	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0096507_6	eggNOG-mapper	398511.BpOF4_06025	NA	NA
UHGV-0096507_8	eggNOG-mapper	338966.Ppro_3072	NA	NA
UHGV-0096507_9	PHROG	phrog_3989	NA	unknown function
UHGV-0096507_9	UniRef90	UniRef90_H2JDI3	NAD-dependent DNA ligase	NA
UHGV-0096507_9	eggNOG-mapper	755731.Clo1100_2167	twin BRCT domain	NA
UHGV-0096507_9	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0096507_9	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0096507_10	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0096507_10	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0096507_10	UniRef90	UniRef90_H3K589	HTH cro/C1-type domain-containing protein	NA
UHGV-0096507_10	eggNOG-mapper	1064535.MELS_1071	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0096507_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096507_10	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0096507_10	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0096507_10	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0096507_11	UniRef90	UniRef90_UPI001CD60DD5	NA	NA
UHGV-0096507_11	eggNOG-mapper	171693.BN988_01635	NA	NA
UHGV-0096507_11	Pfam	PF05339	NA	DUF739
UHGV-0096507_11	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0096507_11	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0096507_12	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0096507_12	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0096507_12	UniRef90	UniRef90_UPI000E48811F	antA/AntB antirepressor family protein	NA
UHGV-0096507_12	eggNOG-mapper	1230342.CTM_17202	Phage antirepressor protein KilAC domain	NA
UHGV-0096507_12	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0096507_12	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0096507_12	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0096507_12	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0096507_15	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0096507_16	UniRef90	UniRef90_H3K5P5	LysM domain-containing protein	NA
UHGV-0096507_16	eggNOG-mapper	457570.Nther_1505	LysM domain	NA
UHGV-0096507_16	Pfam	PF01476	LysM domain	LysM
UHGV-0096507_16	COG	COG1388	LysM repeat	NA
UHGV-0096507_16	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-0096507_17	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0096507_17	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0096507_17	UniRef90	UniRef90_UPI0013D3F9A2	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0096507_17	eggNOG-mapper	397290.C810_01316	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0096507_17	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0096507_17	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0096507_17	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0096507_17	Structural annotation	PF09681, TIGR01714, COG3935	NA	NA
UHGV-0096507_18	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0096507_18	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0096507_18	UniRef90	UniRef90_UPI00195B87C5	ATP-binding protein	NA
UHGV-0096507_18	eggNOG-mapper	1304880.JAGB01000002_gene2233	PFAM IstB-like ATP binding protein	NA
UHGV-0096507_18	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0096507_18	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0096507_18	Structural annotation	PF01695, MF_00377, NF005378, COG1484	NA	NA
UHGV-0096507_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0096507_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0096507_26	UniRef90	UniRef90_UPI000E49F46F	single-stranded DNA-binding protein	NA
UHGV-0096507_26	eggNOG-mapper	1122217.KB899575_gene2011	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0096507_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0096507_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0096507_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0096507_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0096507_26	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0096507_27	PHROG	phrog_33682	NA	unknown function
UHGV-0096507_28	UniRef90	UniRef90_A0A385TYC1	YopX domain-containing protein	NA
UHGV-0096507_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0096507_30	PHROG	phrog_2776	NA	unknown function
UHGV-0096507_30	UniRef90	UniRef90_A0A2S7ZCT0	DNA repair protein MmcB-related protein	NA
UHGV-0096507_30	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0096507_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0096507_34	UniRef90	UniRef90_UPI00195CFC41	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0096507_34	eggNOG-mapper	1235793.C809_01914	sigma factor activity	NA
UHGV-0096507_34	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0096507_34	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0096507_35	PHROG	phrog_1762	NA	unknown function
UHGV-0096507_35	UniRef90	UniRef90_UPI001957D165	NA	NA
UHGV-0096507_35	eggNOG-mapper	521674.Plim_1009	NA	NA
UHGV-0096507_35	Pfam	PF11185	NA	DUF2971
UHGV-0096507_35	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0096507_36	UniRef90	UniRef90_A0A7X2XH56	HNH domain-containing protein	NA
UHGV-0096507_36	eggNOG-mapper	1462526.BN990_01827	HNH nucleases	NA
UHGV-0096507_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0096507_37	Structural annotation	PF11570, NF038178, COG1842	NA	NA
UHGV-0096507_38	PHROG	phrog_34615	NA	unknown function
UHGV-0096507_38	UniRef90	UniRef90_UPI000F0CCFE6	NA	NA
UHGV-0096507_38	eggNOG-mapper	1415775.U729_3036	NA	NA
UHGV-0096507_38	Pfam	PF11185	NA	DUF2971
UHGV-0096507_39	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0096507_39	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0096507_39	UniRef90	UniRef90_A0A0U9HMP1	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0096507_39	eggNOG-mapper	1262914.BN533_01938	NA	NA
UHGV-0096507_39	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0096507_39	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0096507_40	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0096507_40	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0096507_40	UniRef90	UniRef90_UPI000F0C09AB	phage terminase large subunit family protein	NA
UHGV-0096507_40	eggNOG-mapper	1280706.AUJE01000010_gene653	Phage terminase large subunit (GpA)	NA
UHGV-0096507_40	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0096507_40	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0096507_40	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0096507_40	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0096507_40	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0096507_41	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0096507_41	UniRef90	UniRef90_UPI00073EF5B2	NA	NA
UHGV-0096507_41	eggNOG-mapper	1262914.BN533_00292	NA	NA
UHGV-0096507_41	Pfam	PF19645	NA	DUF6148
UHGV-0096507_41	Structural annotation	PF19645	NA	NA
UHGV-0096507_42	PHROG	phrog_21	portal protein	head and packaging
UHGV-0096507_42	UniRef90	UniRef90_R6I758	Phage portal protein	NA
UHGV-0096507_42	eggNOG-mapper	1262914.BN533_00293	Phage portal protein	NA
UHGV-0096507_42	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0096507_42	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0096507_42	COG	COG5511	Phage capsid protein	NA
UHGV-0096507_42	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0096507_43	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0096507_43	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0096507_43	UniRef90	UniRef90_UPI0018C71DAD	Clp protease ClpP	NA
UHGV-0096507_43	eggNOG-mapper	936573.HMPREF1147_1718	Clp protease	NA
UHGV-0096507_43	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0096507_43	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0096507_43	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0096507_44	PHROG	phrog_49	head decoration	head and packaging
UHGV-0096507_44	UniRef90	UniRef90_UPI000F0CF163	head decoration protein	NA
UHGV-0096507_44	eggNOG-mapper	936573.HMPREF1147_1719	Bacteriophage lambda head decoration protein D	NA
UHGV-0096507_44	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-0096507_44	Structural annotation	PF02924	NA	NA
UHGV-0096507_45	PHROG	phrog_29	major head protein	head and packaging
UHGV-0096507_45	UniRef90	UniRef90_UPI000F0CF09A	major capsid protein	NA
UHGV-0096507_45	eggNOG-mapper	936573.HMPREF1147_1720	Phage major capsid protein E	NA
UHGV-0096507_45	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0096507_45	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0096507_47	PHROG	phrog_2551	minor tail protein	tail
UHGV-0096507_47	Structural annotation	PF05354, TIGR01563	NA	NA
UHGV-0096507_48	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0096507_48	UniRef90	UniRef90_UPI0018CF00C8	phage tail protein	NA
UHGV-0096507_48	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0096507_48	Structural annotation	PF06763	NA	NA
UHGV-0096507_49	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0096507_49	eggNOG-mapper	1280706.AUJE01000010_gene663	NA	NA
UHGV-0096507_49	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0096507_50	PHROG	phrog_4089	NA	unknown function
UHGV-0096507_51	KOfam	K06907	NA	NA
UHGV-0096507_51	PHROG	phrog_23	tail sheath	tail
UHGV-0096507_51	UniRef90	UniRef90_UPI0004E229EB	phage tail protein	NA
UHGV-0096507_51	eggNOG-mapper	864563.HMPREF9166_0562	COG3497 Phage tail sheath protein FI	NA
UHGV-0096507_51	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0096507_51	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0096507_52	KOfam	K06908	NA	NA
UHGV-0096507_52	PHROG	phrog_55	head closure	connector
UHGV-0096507_52	UniRef90	UniRef90_UPI0018C47A07	phage major tail tube protein	NA
UHGV-0096507_52	eggNOG-mapper	857293.CAAU_0807	Phage tail tube protein FII	NA
UHGV-0096507_52	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0096507_52	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0096507_52	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0096507_55	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0096507_55	UniRef90	UniRef90_UPI0003F5F321	phage tail tape measure protein	NA
UHGV-0096507_55	eggNOG-mapper	936573.HMPREF1147_1730	Phage-related minor tail protein	NA
UHGV-0096507_55	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0096507_55	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0096507_55	COG	COG5283	Phage-related tail protein	NA
UHGV-0096507_56	PHROG	phrog_46	tail protein	tail
UHGV-0096507_56	UniRef90	UniRef90_A0A348AJ10	Phage Tail Protein X	NA
UHGV-0096507_56	eggNOG-mapper	1232443.BAIA02000135_gene1416	Phage Tail Protein X	NA
UHGV-0096507_56	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0096507_57	KOfam	K06905	NA	NA
UHGV-0096507_57	PHROG	phrog_52	tail protein	tail
UHGV-0096507_57	UniRef90	UniRef90_J4UR03	Phage late control protein D protein	NA
UHGV-0096507_57	eggNOG-mapper	1280706.AUJE01000010_gene671	COG3500 Phage protein D	NA
UHGV-0096507_57	Pfam	PF05954	Phage tail baseplate hub (GPD)	Phage_GPD
UHGV-0096507_57	COG	COG3500	NA	NA
UHGV-0096507_57	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0096507_58	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-0096507_58	UniRef90	UniRef90_UPI0018C4C5FA	phage baseplate assembly protein V	NA
UHGV-0096507_58	eggNOG-mapper	526218.Sterm_0929	Type VI secretion system, phage-baseplate injector	NA
UHGV-0096507_58	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0096507_59	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-0096507_59	UniRef90	UniRef90_A0A1M6GFE9	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain-containing protein, incolved in TypeVI secretion	NA
UHGV-0096507_59	eggNOG-mapper	546271.Selsp_1317	PAAR motif	NA
UHGV-0096507_59	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-0096507_59	Structural annotation	PF05488, NF033420, COG4104	NA	NA
UHGV-0096507_60	PHROG	phrog_76	tail protein	tail
UHGV-0096507_60	UniRef90	UniRef90_A0A3A6WFQ3	Phage tail protein	NA
UHGV-0096507_60	eggNOG-mapper	349161.Dred_1218	Phage P2 GpU	NA
UHGV-0096507_60	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0096507_60	COG	COG3499	NA	NA
UHGV-0096507_60	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0096507_61	KOfam	K11905	K11905; type VI secretion system protein	NA
UHGV-0096507_61	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0096507_61	UniRef90	UniRef90_UPI0018C585E5	GPW/gp25 family protein	NA
UHGV-0096507_61	eggNOG-mapper	936573.HMPREF1147_1734	GPW Gp25 family protein	NA
UHGV-0096507_61	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0096507_61	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0096507_61	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0096507_62	PHROG	phrog_6	baseplate protein	tail
UHGV-0096507_62	UniRef90	UniRef90_A0A2A2IKV6	Baseplate protein	NA
UHGV-0096507_62	eggNOG-mapper	1122917.KB899659_gene6074	Baseplate J-like protein	NA
UHGV-0096507_62	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0096507_62	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0096507_62	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0096507_63	PHROG	phrog_14404	baseplate protein	tail
UHGV-0096507_63	UniRef90	UniRef90_A0A2A2IJZ7	Phage tail protein I	NA
UHGV-0096507_63	eggNOG-mapper	1262914.BN533_01711	Phage tail protein (Tail_P2_I)	NA
UHGV-0096507_63	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0096507_63	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0096507_63	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0096507_64	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0096507_64	UniRef90	UniRef90_UPI00195EB260	phage tail protein	NA
UHGV-0096507_64	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0096507_64	Structural annotation	PF12571	NA	NA