UHGV-0096525

Genome information

Genome length 49,220 bps

CDS count 65

Completeness 99.90% (high-quality)

geNomad score 0.9511

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096525
vOTU ID	vOTU-008400
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_233910
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	29
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9511
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.09
Jumbo phage	No

Genome content
Genome length	49,220 bps
GC content	47.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	87.24%
Average CDS length	663.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096525_4	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0096525_4	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0096525_4	UniRef90	UniRef90_A0A519BIQ6	Single-stranded DNA-binding protein	NA
UHGV-0096525_4	eggNOG-mapper	1249997.JHZW01000002_gene747	Single-strand binding protein family	NA
UHGV-0096525_4	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0096525_4	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0096525_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0096525_4	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0096525_6	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0096525_6	UniRef90	UniRef90_UPI0013F5FCB5	ORF6C domain-containing protein	NA
UHGV-0096525_6	eggNOG-mapper	1203554.HMPREF1476_00228	BRO family, N-terminal domain	NA
UHGV-0096525_6	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0096525_6	COG	COG3617	Prophage antirepressor	NA
UHGV-0096525_6	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0096525_9	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0096525_9	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0096525_10	PHROG	phrog_10477	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0096525_10	eggNOG-mapper	1218075.BAYA01000003_gene605	NA	NA
UHGV-0096525_11	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0096525_11	UniRef90	UniRef90_A0A3B9Q777	PDDEXK_1 domain-containing protein	NA
UHGV-0096525_11	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0096525_11	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0096525_12	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0096525_12	UniRef90	UniRef90_A0A6J5P2T5	RecT family	NA
UHGV-0096525_12	eggNOG-mapper	1217710.F969_02564	NA	NA
UHGV-0096525_12	Pfam	PF03837	RecT family	RecT
UHGV-0096525_12	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0096525_14	PHROG	phrog_9226	NA	unknown function
UHGV-0096525_14	eggNOG-mapper	1112217.PPL19_05310	NA	NA
UHGV-0096525_15	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0096525_15	UniRef90	UniRef90_A0A139K4R0	BRO family protein	NA
UHGV-0096525_15	eggNOG-mapper	1203554.HMPREF1476_00228	BRO family, N-terminal domain	NA
UHGV-0096525_15	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0096525_15	COG	COG3617	Prophage antirepressor	NA
UHGV-0096525_15	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0096525_16	PHROG	phrog_6191	NA	unknown function
UHGV-0096525_16	eggNOG-mapper	1278971.AOGF01000026_gene1579	NA	NA
UHGV-0096525_16	Structural annotation	PF12857, NF009730, COG5569	NA	NA
UHGV-0096525_17	UniRef90	UniRef90_UPI0013F5FAFB	haloacid dehalogenase-like hydrolase	NA
UHGV-0096525_17	eggNOG-mapper	2754.EH55_08680	Phosphoserine phosphatase	NA
UHGV-0096525_17	COG	COG0560	Phosphoserine phosphatase	NA
UHGV-0096525_17	Structural annotation	PF06888, MF_01680, TIGR00338, COG0560	NA	NA
UHGV-0096525_18	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0096525_18	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0096525_18	UniRef90	UniRef90_K1JMR2	HTH cro/C1-type domain-containing protein	NA
UHGV-0096525_18	eggNOG-mapper	742823.HMPREF9465_00895	Helix-turn-helix XRE-family like proteins	NA
UHGV-0096525_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0096525_18	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0096525_18	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0096525_18	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0096525_19	UniRef90	UniRef90_K1JIJ3	HTH cro/C1-type domain-containing protein	NA
UHGV-0096525_19	Pfam	PF15943	Bacterial toxin YdaS	YdaS_toxin
UHGV-0096525_20	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0096525_20	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0096525_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0096525_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0096525_21	UniRef90	UniRef90_UPI0013F62EB9	ATP-binding protein	NA
UHGV-0096525_21	eggNOG-mapper	742823.HMPREF9465_00892	DNA-dependent DNA replication	NA
UHGV-0096525_21	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0096525_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0096525_21	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0096525_26	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0096525_26	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0096525_26	UniRef90	UniRef90_UPI0011CC4457	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0096525_26	eggNOG-mapper	742823.HMPREF9465_00230	Holliday junction resolvase	NA
UHGV-0096525_26	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0096525_26	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0096525_26	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0096525_28	PHROG	phrog_79	anti-termination protein Q-like	transcription regulation
UHGV-0096525_32	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0096525_33	PHROG	phrog_1482	terminase small subunit	head and packaging
UHGV-0096525_33	UniRef90	UniRef90_UPI001C3EB67D	helix-turn-helix domain-containing protein	NA
UHGV-0096525_33	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-0096525_34	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0096525_34	UniRef90	UniRef90_A0A3D3SDG7	Terminase	NA
UHGV-0096525_34	eggNOG-mapper	469610.HMPREF0189_01184	Terminase RNaseH-like domain	NA
UHGV-0096525_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0096525_34	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0096525_34	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0096525_34	COG	COG5362	Phage terminase large subunit	NA
UHGV-0096525_34	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0096525_35	KOfam	K09961	NA	NA
UHGV-0096525_35	PHROG	phrog_146	portal protein	head and packaging
UHGV-0096525_35	UniRef90	UniRef90_K1JXY2	HI1409 family phage-associated protein	NA
UHGV-0096525_35	eggNOG-mapper	742823.HMPREF9465_00946	NA	NA
UHGV-0096525_35	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0096525_35	COG	COG3567	NA	NA
UHGV-0096525_35	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0096525_36	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0096525_36	UniRef90	UniRef90_F3QJD2	Conserved domain protein	NA
UHGV-0096525_36	eggNOG-mapper	762966.HMPREF9439_01033	Phage Mu protein F like protein	NA
UHGV-0096525_36	COG	COG2369	NA	NA
UHGV-0096525_36	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0096525_37	KOfam	K09960	NA	NA
UHGV-0096525_37	PHROG	phrog_2229	head maturation protease	head and packaging
UHGV-0096525_37	UniRef90	UniRef90_UPI00158FC873	NA	NA
UHGV-0096525_37	eggNOG-mapper	469610.HMPREF0189_01187	NA	NA
UHGV-0096525_37	Pfam	PF09979	NA	DUF2213
UHGV-0096525_37	COG	COG3566	NA	NA
UHGV-0096525_37	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0096525_38	PHROG	phrog_2122	minor head protein	head and packaging
UHGV-0096525_38	eggNOG-mapper	762966.HMPREF9439_01035	NA	NA
UHGV-0096525_39	PHROG	phrog_264	major head protein	head and packaging
UHGV-0096525_39	UniRef90	UniRef90_UPI0013F68C90	NA	NA
UHGV-0096525_39	eggNOG-mapper	469610.HMPREF0189_01189	NA	NA
UHGV-0096525_39	Pfam	PF09950	NA	DUF2184
UHGV-0096525_39	COG	COG4834	NA	NA
UHGV-0096525_39	Structural annotation	PF09950, MF_04119, NF041155, COG4834	NA	NA
UHGV-0096525_40	eggNOG-mapper	762966.HMPREF9439_01037	NA	NA
UHGV-0096525_41	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0096525_41	UniRef90	UniRef90_UPI001489CD3B	NA	NA
UHGV-0096525_41	eggNOG-mapper	1336237.JAEE01000001_gene2094	NA	NA
UHGV-0096525_41	Pfam	PF13262	NA	DUF4054
UHGV-0096525_41	Structural annotation	PF13262	NA	NA
UHGV-0096525_42	PHROG	phrog_222	tail protein	tail
UHGV-0096525_42	eggNOG-mapper	742823.HMPREF9465_00938	NA	NA
UHGV-0096525_43	PHROG	phrog_1912	head protein	head and packaging
UHGV-0096525_43	eggNOG-mapper	742823.HMPREF9465_00937	NA	NA
UHGV-0096525_43	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0096525_44	PHROG	phrog_1876	NA	unknown function
UHGV-0096525_44	eggNOG-mapper	742823.HMPREF9465_00936	NA	NA
UHGV-0096525_44	Structural annotation	PF05561	NA	NA
UHGV-0096525_45	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0096525_45	UniRef90	UniRef90_UPI0013F5A4D1	NA	NA
UHGV-0096525_45	eggNOG-mapper	742823.HMPREF9465_00935	NA	NA
UHGV-0096525_45	Pfam	PF11863	NA	DUF3383
UHGV-0096525_46	PHROG	phrog_1964	virion structural protein	head and packaging
UHGV-0096525_46	eggNOG-mapper	742823.HMPREF9465_00934	NA	NA
UHGV-0096525_46	Structural annotation	PF11681, TIGR01603, COG3157	NA	NA
UHGV-0096525_47	PHROG	phrog_1932	tail assembly chaperone	tail
UHGV-0096525_47	eggNOG-mapper	742823.HMPREF9465_00933	NA	NA
UHGV-0096525_48	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-0096525_48	UniRef90	UniRef90_F3QJE6	Conserved domain protein	NA
UHGV-0096525_48	eggNOG-mapper	742823.HMPREF9465_00932	domain protein	NA
UHGV-0096525_48	COG	COG1511	NA	NA
UHGV-0096525_49	PHROG	phrog_1830	NA	unknown function
UHGV-0096525_49	eggNOG-mapper	742823.HMPREF9465_00931	NA	NA
UHGV-0096525_49	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0096525_50	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0096525_50	eggNOG-mapper	243265.plu3390	NA	NA
UHGV-0096525_51	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0096525_51	UniRef90	UniRef90_F3QJE9	Conserved domain protein	NA
UHGV-0096525_51	eggNOG-mapper	742823.HMPREF9465_00929	NA	NA
UHGV-0096525_51	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0096525_52	PHROG	phrog_20516	NA	unknown function
UHGV-0096525_52	UniRef90	UniRef90_K1JIF5	Phage_spike domain-containing protein	NA
UHGV-0096525_52	eggNOG-mapper	742823.HMPREF9465_00928	Baseplate assembly protein	NA
UHGV-0096525_52	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0096525_52	Structural annotation	PF18352, TIGR01644, COG4384	NA	NA
UHGV-0096525_53	PHROG	phrog_120	baseplate protein	tail
UHGV-0096525_53	UniRef90	UniRef90_F3QJF1	Conserved domain protein	NA
UHGV-0096525_53	eggNOG-mapper	469610.HMPREF0189_01205	NA	NA
UHGV-0096525_53	Structural annotation	PF10761, TIGR03357, COG3628	NA	NA
UHGV-0096525_54	PHROG	phrog_6	baseplate protein	tail
UHGV-0096525_54	UniRef90	UniRef90_D9Y6Q1	Baseplate_J domain-containing protein	NA
UHGV-0096525_54	eggNOG-mapper	762966.HMPREF9439_01053	Baseplate J-like protein	NA
UHGV-0096525_54	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0096525_54	COG	COG3299	NA	NA
UHGV-0096525_54	Structural annotation	PF04865, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0096525_55	PHROG	phrog_587	structural protein	head and packaging
UHGV-0096525_55	UniRef90	UniRef90_F3QJF3	Conserved domain protein	NA
UHGV-0096525_55	eggNOG-mapper	469610.HMPREF0189_01207	NA	NA
UHGV-0096525_55	Pfam	PF11041	NA	DUF2612
UHGV-0096525_55	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0096525_56	PHROG	phrog_1396	tail fiber protein	tail
UHGV-0096525_56	UniRef90	UniRef90_D9Y6Q3	Phage Tail Collar Domain protein	NA
UHGV-0096525_56	eggNOG-mapper	469610.HMPREF0189_01208	tail collar domain protein	NA
UHGV-0096525_56	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0096525_56	COG	COG4675	Phage tail collar domain	NA
UHGV-0096525_58	PHROG	phrog_1141	tail fiber protein	tail
UHGV-0096525_58	UniRef90	UniRef90_K1JU46	NA	NA
UHGV-0096525_58	eggNOG-mapper	742823.HMPREF9465_01297	NA	NA
UHGV-0096525_58	Pfam	PF14301	NA	DUF4376
UHGV-0096525_58	Structural annotation	PF14301	NA	NA
UHGV-0096525_59	PHROG	phrog_3342	NA	unknown function
UHGV-0096525_59	UniRef90	UniRef90_A0A6L6YMG8	Pseudouridine synthase	NA
UHGV-0096525_59	eggNOG-mapper	556268.OFAG_02319	NA	NA
UHGV-0096525_61	PHROG	phrog_785	holin	lysis
UHGV-0096525_61	UniRef90	UniRef90_UPI001C254033	phage holin family protein	NA
UHGV-0096525_61	eggNOG-mapper	742823.HMPREF9465_00919	LydA holin phage, holin superfamily III	NA
UHGV-0096525_61	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-0096525_61	Structural annotation	PF16083, TIGR01594	NA	NA
UHGV-0096525_62	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0096525_62	PHROG	phrog_7	endolysin	lysis
UHGV-0096525_62	UniRef90	UniRef90_Q9F9Z4	Lysozyme	NA
UHGV-0096525_62	eggNOG-mapper	1316936.K678_04487	Phage lysozyme	NA
UHGV-0096525_62	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0096525_62	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0096525_62	HAMAP	MF_04110	Endolysin	NA
UHGV-0096525_62	Structural annotation	PF00959, MF_04110, COG3772	NA	NA