UHGV-0096581

Genome information

Genome length 30,356 bps

CDS count 41

Completeness 54.13% (medium-quality)

geNomad score 0.9584

Prediction confidence Confident

Genome information
Genome ID	UHGV-0096581
vOTU ID	vOTU-017377
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_230757
BioSample	SAMEA3708648
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9584
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.68
Jumbo phage	No

Genome content
Genome length	30,356 bps
GC content	55.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	84.85%
Average CDS length	631.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0096581_1	UniRef90	UniRef90_UPI001C3A936A	NA	NA
UHGV-0096581_1	eggNOG-mapper	563192.HMPREF0179_01765	NA	NA
UHGV-0096581_1	Pfam	PF10387	NA	DUF2442
UHGV-0096581_2	UniRef90	UniRef90_UPI001C3C13C2	NA	NA
UHGV-0096581_2	eggNOG-mapper	1408428.JNJP01000135_gene3788	NA	NA
UHGV-0096581_2	Pfam	PF13711	NA	DUF4160
UHGV-0096581_2	Structural annotation	PF13711	NA	NA
UHGV-0096581_4	UniRef90	UniRef90_A0A1B7XEK5	Amino acid-binding protein	NA
UHGV-0096581_4	eggNOG-mapper	563192.HMPREF0179_01762	NA	NA
UHGV-0096581_4	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-0096581_4	Structural annotation	PF06892, NF041471	NA	NA
UHGV-0096581_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0096581_5	UniRef90	UniRef90_G1V4U8	Peptidase_S24 domain-containing protein	NA
UHGV-0096581_5	eggNOG-mapper	1121456.ATVA01000014_gene614	Peptidase S24-like	NA
UHGV-0096581_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0096581_5	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0096581_5	Structural annotation	PF00717, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0096581_6	PHROG	phrog_101	CII-like transcriptional activator	transcription regulation
UHGV-0096581_6	eggNOG-mapper	1408428.JNJP01000132_gene2356	NA	NA
UHGV-0096581_6	Pfam	PF06892	Phage regulatory protein CII (CP76)	Phage_CP76
UHGV-0096581_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0096581_7	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0096581_7	UniRef90	UniRef90_E5Y6E3	Anti-repressor protein	NA
UHGV-0096581_7	eggNOG-mapper	1408428.JNJP01000132_gene2355	Phage antirepressor protein KilAC domain	NA
UHGV-0096581_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0096581_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0096581_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0096581_7	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0096581_8	UniRef90	UniRef90_UPI001D0B1921	RNA helicase	NA
UHGV-0096581_9	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0096581_9	UniRef90	UniRef90_UPI001D09F98A	helix-turn-helix domain-containing protein	NA
UHGV-0096581_9	eggNOG-mapper	563192.HMPREF0179_01754	DnaD domain protein	NA
UHGV-0096581_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0096581_9	Structural annotation	PF07106, TIGR01610, COG0735	NA	NA
UHGV-0096581_10	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0096581_10	UniRef90	UniRef90_E5Y6E0	Mor domain-containing protein	NA
UHGV-0096581_10	eggNOG-mapper	563192.HMPREF0179_01753	NA	NA
UHGV-0096581_10	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0096581_10	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0096581_11	PHROG	phrog_824	NA	unknown function
UHGV-0096581_11	UniRef90	UniRef90_E5Y6D9	VRR-NUC domain-containing protein	NA
UHGV-0096581_11	eggNOG-mapper	1408428.JNJP01000030_gene973	VRR_NUC	NA
UHGV-0096581_11	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0096581_13	Pfam	PF01503	Phosphoribosyl-ATP pyrophosphohydrolase	PRA-PH
UHGV-0096581_14	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0096581_14	PHROG	phrog_894	endolysin	lysis
UHGV-0096581_14	UniRef90	UniRef90_S2KWS0	Peptidase_M15_3 domain-containing protein	NA
UHGV-0096581_14	eggNOG-mapper	1408428.JNJP01000066_gene1738	Peptidase M15	NA
UHGV-0096581_14	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0096581_14	COG	COG3108	NA	NA
UHGV-0096581_14	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0096581_16	eggNOG-mapper	1408428.JNJP01000066_gene1736	NA	NA
UHGV-0096581_17	eggNOG-mapper	457398.HMPREF0326_02526	NA	NA
UHGV-0096581_19	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0096581_19	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0096581_19	UniRef90	UniRef90_G1V4W2	PAPS_reduct domain-containing protein	NA
UHGV-0096581_19	eggNOG-mapper	1408428.JNJP01000066_gene1733	sulfate reduction	NA
UHGV-0096581_19	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0096581_19	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0096581_19	Structural annotation	PF01507, MF_00345, NF006351, COG0175	NA	NA
UHGV-0096581_20	PHROG	phrog_9353	NA	unknown function
UHGV-0096581_20	UniRef90	UniRef90_A0A4P5P3Z7	ParB domain-containing protein	NA
UHGV-0096581_20	eggNOG-mapper	1408428.JNJP01000066_gene1732	DNA binding	NA
UHGV-0096581_20	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0096581_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0096581_20	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0096581_20	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0096581_21	KOfam	K23398	TRIP4; activating signal cointegrator 1	NA
UHGV-0096581_21	PHROG	phrog_3193	NA	unknown function
UHGV-0096581_21	UniRef90	UniRef90_G1V4W4	ASCH domain-containing protein	NA
UHGV-0096581_21	eggNOG-mapper	1408428.JNJP01000066_gene1731	NA	NA
UHGV-0096581_21	Pfam	PF04266	ASCH domain	ASCH
UHGV-0096581_22	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0096581_22	AcrCatalog	cluster_60149	NA	NA
UHGV-0096581_22	NCBIFam	NF041373.1	HGGxSTG domain-containing protein	NA
UHGV-0096581_22	COG	COG3131	Periplasmic glucan biosynthesis protein OpgG	NA
UHGV-0096581_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0096581_23	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0096581_23	UniRef90	UniRef90_A0A1V5XQ64	Terminase-like family protein	NA
UHGV-0096581_23	eggNOG-mapper	1408428.JNJP01000066_gene1729	phage Terminase large subunit	NA
UHGV-0096581_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0096581_23	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0096581_24	PHROG	phrog_145	portal protein	head and packaging
UHGV-0096581_24	UniRef90	UniRef90_G1V4W7	NA	NA
UHGV-0096581_24	eggNOG-mapper	1408428.JNJP01000066_gene1728	NA	NA
UHGV-0096581_24	Pfam	PF13264	NA	DUF4055
UHGV-0096581_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0096581_25	KOfam	K19169	dndB; DNA sulfur modification protein DndB	NA
UHGV-0096581_25	PHROG	phrog_1033	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0096581_25	UniRef90	UniRef90_UPI001D0B5FCD	DGQHR domain-containing protein	NA
UHGV-0096581_25	eggNOG-mapper	1198232.CYCME_1135	DNA-sulfur modification-associated	NA
UHGV-0096581_25	PADLOC	DpdB_00001	DpdB	DPD
UHGV-0096581_25	Pfam	PF14072	DNA-sulfur modification-associated	DndB
UHGV-0096581_25	NCBIFam	TIGR03187.1	DGQHR domain-containing protein	NA
UHGV-0096581_26	eggNOG-mapper	1198232.CYCME_1136	NA	NA
UHGV-0096581_27	KOfam	K21498	higA-1; antitoxin HigA-1	NA
UHGV-0096581_27	PHROG	phrog_1381	plasmid antitoxin with HTH domain	moron, auxiliary metabolic gene and host takeover
UHGV-0096581_27	UniRef90	UniRef90_E5Y259	HigA family addiction module antidote protein	NA
UHGV-0096581_27	eggNOG-mapper	1408428.JNJP01000009_gene1343	TIGRFAM Addiction module antidote protein, HigA	NA
UHGV-0096581_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0096581_27	NCBIFam	TIGR02607.1	HigA family addiction module antitoxin	NA
UHGV-0096581_27	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0096581_28	PHROG	phrog_9151	HicB-like antitoxin	moron, auxiliary metabolic gene and host takeover
UHGV-0096581_28	UniRef90	UniRef90_UPI0013EB074C	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0096581_28	eggNOG-mapper	563192.HMPREF0179_00268	HicB family	NA
UHGV-0096581_28	Pfam	PF05534	HicB family	HicB
UHGV-0096581_28	COG	COG4226	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0096581_28	Structural annotation	PF21748, PF05534, NF041264, COG4226	NA	NA
UHGV-0096581_29	PHROG	phrog_8887	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0096581_29	UniRef90	UniRef90_A0A8I1P7L0	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0096581_29	eggNOG-mapper	1089551.KE386572_gene4167	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0096581_29	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0096581_30	PHROG	phrog_784	NA	unknown function
UHGV-0096581_30	UniRef90	UniRef90_A0A3G8F207	Minor structural protein	NA
UHGV-0096581_30	eggNOG-mapper	1408428.JNJP01000009_gene1342	NA	NA
UHGV-0096581_30	Pfam	PF20356	NA	DUF6651
UHGV-0096581_30	Structural annotation	PF20356	NA	NA
UHGV-0096581_31	PHROG	phrog_283	major head protein	head and packaging
UHGV-0096581_31	UniRef90	UniRef90_UPI001C2DDC3A	P22 coat - protein 5 family protein	NA
UHGV-0096581_31	eggNOG-mapper	1000565.METUNv1_01689	P22 coat protein - gene protein 5	NA
UHGV-0096581_31	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0096581_31	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0096581_32	PHROG	phrog_1514	NA	unknown function
UHGV-0096581_32	eggNOG-mapper	1408428.JNJP01000148_gene977	NA	NA
UHGV-0096581_33	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-0096581_33	eggNOG-mapper	1408428.JNJP01000148_gene978	NA	NA
UHGV-0096581_33	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0096581_33	Structural annotation	PF20557	NA	NA
UHGV-0096581_34	PHROG	phrog_161	head closure Hc1	connector
UHGV-0096581_34	Structural annotation	PF11649, TIGR01563, COG5614	NA	NA
UHGV-0096581_35	PHROG	phrog_169	tail completion or Neck1 protein	connector
UHGV-0096581_35	UniRef90	UniRef90_UPI001BA6EC98	HK97 gp10 family phage protein	NA
UHGV-0096581_35	eggNOG-mapper	1408428.JNJP01000149_gene198	NA	NA
UHGV-0096581_36	Structural annotation	PF13554, COG5003	NA	NA
UHGV-0096581_37	eggNOG-mapper	1408428.JNJP01000149_gene200	NA	NA
UHGV-0096581_38	Structural annotation	PF08748	NA	NA
UHGV-0096581_40	COG	COG0526	Thiol-disulfide isomerase or thioredoxin	NA
UHGV-0096581_41	PHROG	phrog_10093	tail length tape measure protein	tail
UHGV-0096581_41	UniRef90	UniRef90_G1V503	Tape_meas_lam_C domain-containing protein (Fragment)	NA
UHGV-0096581_41	eggNOG-mapper	882.DVU_2157	tape measure	NA
UHGV-0096581_41	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0096581_41	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA